Gchil10057.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10057.t1
Unique NameGchil10057.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:641495..642212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4538.ORGLA01G0023300.1
PFAMsCGI-121
Max annot lvl35493|Streptophyta
KEGG koko:K15901
Evalue3.94e-28
EggNOG OGsKOG4066@1|root,KOG4066@2759|Eukaryota,37N2I@33090|Viridiplantae,3GAKZ@35493|Streptophyta,3KZ38@4447|Liliopsida,3I4E9@38820|Poales
DescriptionBelongs to the CGI121 TPRKB family
COG categoryK
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10057Gchil10057Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 641495..642212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10057.t1Gchil10057.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 641495..642212 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10057.t1.stop1Gchil10057.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 641495..641497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10057.t1.CDS1Gchil10057.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 641495..641829 -
Gchil10057.t1.CDS2Gchil10057.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 641919..641970 -
Gchil10057.t1.CDS3Gchil10057.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 642078..642212 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10057.t1.exon1Gchil10057.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 641495..641829 -
Gchil10057.t1.exon2Gchil10057.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 641919..641970 -
Gchil10057.t1.exon3Gchil10057.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 642078..642212 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10057.t1.intron1Gchil10057.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 641830..641918 -
Gchil10057.t1.intron2Gchil10057.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 641971..642077 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10057.t1.start1Gchil10057.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 642210..642212 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10057.t1 ID=Gchil10057.t1|Name=Gchil10057.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=174bp
MRFQLKTQNNSSVEILLFRNATNTKGILSLVRDGEIPAAFLQARLIPDIF
PVLVAVSKAVQDDKNSSMSTRNLFTEIIYNLSGSKNISKALKTFGIQEDT
SDILVVVPHPQNETTEKIRHYIKAEEMSFNENCLEHIAEERAVKRIYGIT
EKELECGTLVDSVVTRMACRDLK*
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spliced messenger RNA

>Gchil10057.t1 ID=Gchil10057.t1|Name=Gchil10057.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00004442_pilon:641495..642212- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCCAACTCAAAACCCAAAACAACAGTTCAGTGGAGATTCTACT
GTTTCGAAATGCAACAAACACGAAGGGCATTCTATCGCTTGTCCGTGACG
GTGAGATTCCCGCAGCATTTCTCCAAGCAAGATTGATTCCGGATATATTT
CCGGTTCTTGTGGCCGTCTCAAAAGCTGTTCAGGATGACAAAAATTCTTC
AATGAGTACGCGAAATTTATTCACTGAAATTATATATAACCTATCTGGAA
GCAAAAACATCAGTAAGGCGCTCAAAACGTTTGGTATCCAAGAAGATACA
TCGGATATTTTAGTGGTTGTCCCGCATCCTCAAAATGAAACTACAGAAAA
GATCCGCCATTATATCAAGGCTGAAGAAATGTCCTTCAATGAAAATTGCT
TGGAGCACATCGCGGAAGAAAGAGCAGTGAAAAGAATATACGGGATTACG
GAAAAGGAGTTAGAGTGTGGAACACTAGTTGACTCAGTTGTCACGAGAAT
GGCTTGCAGAGATCTGAAATAA
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protein sequence of Gchil10057.t1

>Gchil10057.t1 ID=Gchil10057.t1|Name=Gchil10057.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=174bp
MRFQLKTQNNSSVEILLFRNATNTKGILSLVRDGEIPAAFLQARLIPDIF
PVLVAVSKAVQDDKNSSMSTRNLFTEIIYNLSGSKNISKALKTFGIQEDT
SDILVVVPHPQNETTEKIRHYIKAEEMSFNENCLEHIAEERAVKRIYGIT
EKELECGTLVDSVVTRMACRDLK*
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mRNA from alignment at tig00004442_pilon:641495..642212-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10057.t1 ID=Gchil10057.t1|Name=Gchil10057.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=718bp|location=Sequence derived from alignment at tig00004442_pilon:641495..642212- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTTCCAACTCAAAACCCAAAACAACAGTTCAGTGGAGATTCTACT
GTTTCGAAATGCAACAAACACGAAGGGCATTCTATCGCTTGTCCGTGACG
GTGAGATTCCCGCAGCATTTCTCCAAGCAAGATTGGTATGGTAATTCATT
CTCATCGAAATTTCAAATCAAGACGAATGCCGTCTTGAGGCTTACTTCGA
CGTATGCAATTCTTACGCTTTGAAAACGAATTTTAAACACAGATTCCGGA
TATATTTCCGGTTCTTGTGGCCGTCTCAAAAGCTGTTCAGGATGGTAAGT
CTTTAGTAAGAATGAAACCACTATTTTGAACTTTGCGTTGTGTAACCAAC
TTCTCCCTCAAACGTTTCATGCGTCTTGACAAGACAAAAATTCTTCAATG
AGTACGCGAAATTTATTCACTGAAATTATATATAACCTATCTGGAAGCAA
AAACATCAGTAAGGCGCTCAAAACGTTTGGTATCCAAGAAGATACATCGG
ATATTTTAGTGGTTGTCCCGCATCCTCAAAATGAAACTACAGAAAAGATC
CGCCATTATATCAAGGCTGAAGAAATGTCCTTCAATGAAAATTGCTTGGA
GCACATCGCGGAAGAAAGAGCAGTGAAAAGAATATACGGGATTACGGAAA
AGGAGTTAGAGTGTGGAACACTAGTTGACTCAGTTGTCACGAGAATGGCT
TGCAGAGATCTGAAATAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:641495..642212-

>Gchil10057.t1 ID=Gchil10057.t1|Name=Gchil10057.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00004442_pilon:641495..642212- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTTCCAACTCAAAACCCAAAACAACAGTTCAGTGGAGATTCTACT
GTTTCGAAATGCAACAAACACGAAGGGCATTCTATCGCTTGTCCGTGACG
GTGAGATTCCCGCAGCATTTCTCCAAGCAAGATTGATTCCGGATATATTT
CCGGTTCTTGTGGCCGTCTCAAAAGCTGTTCAGGATGACAAAAATTCTTC
AATGAGTACGCGAAATTTATTCACTGAAATTATATATAACCTATCTGGAA
GCAAAAACATCAGTAAGGCGCTCAAAACGTTTGGTATCCAAGAAGATACA
TCGGATATTTTAGTGGTTGTCCCGCATCCTCAAAATGAAACTACAGAAAA
GATCCGCCATTATATCAAGGCTGAAGAAATGTCCTTCAATGAAAATTGCT
TGGAGCACATCGCGGAAGAAAGAGCAGTGAAAAGAATATACGGGATTACG
GAAAAGGAGTTAGAGTGTGGAACACTAGTTGACTCAGTTGTCACGAGAAT
GGCTTGCAGAGATCTGAAATAA
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