Gchil10056.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10056.t1
Unique Name	Gchil10056.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	614

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:639553..641394 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	104355.XP_007861648.1
PFAMs	DUF2009,zf-B_box
Max annot lvl	4751\|Fungi
Evalue	5.23e-188
EggNOG OGs	28J77@1\|root,2QRJJ@2759\|Eukaryota,38CC6@33154\|Opisthokonta,3P06F@4751\|Fungi,3V4IH@5204\|Basidiomycota,224T2@155619\|Agaricomycetes,3H48G@355688\|Agaricomycetes incertae sedis
Description	Protein of unknown function (DUF2009)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10056	Gchil10056	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 639553..641394 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10056.t1.start1	Gchil10056.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 639553..639555 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10056.t1.CDS1	Gchil10056.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 639553..641394 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10056.t1.exon1	Gchil10056.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 639553..641394 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10056.t1.stop1	Gchil10056.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 641392..641394 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10056.t1	Gchil10056.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 639553..641394 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:639553..641394+
coding sequence from alignment at tig00004442_pilon:639553..641394+

mRNA sequence

>Gchil10056.t1 ID=Gchil10056.t1|Name=Gchil10056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=614bp
MGADSRAHPAGELAAVLDESLGGTDVPNGAHPPSTLDDTQIEKLAQQQEL
SRRAFDAVLEKSSQQWRAETDPRVLADALVTILDQIRGPALSRVGPHTQQ
HQPSSSQPDAHQADANDHDINMDHYDDAIDTPLQNGHSSDKKHSSSSIAA
RAKYIPLRLSQTERKILRLVEAALNVSEYTDVVDVLATSRMKTRQRVHTQ
IRDLCSILTGLAVAMDYNKGQKLVKDRDFAENQPFFQTAFEIARRHKVAN
PEKSRDIYGKLIHMLQDSVNDEIVRLLEFSCVKPLITVATYLEERGGLEL
LDDPLIEKATAEIIPDGKNRRAVQREIQAKEHAVSVLAKRYKNGRILDED
EVRRCLYSIGDNNAYLRGARDPCDTMIKYLHAYFKPERPADKRDSIAITE
GVAGARLTHDHVRQFRYVFQSLALWREVCHEMYRLWYLSEKDLLDAKNPY
HLRNTGQGLNRVQAAPNVSRAMYEILNTVQRRVGKWVGSSVVHLGDYNVP
NALTFIDKYAQVQRILGPLITCIRRIGEIAANDKSIQKYINETFGGVEPA
RKLILRDFFRHAFDGSGASDWFSAGSCIDGRLTSAWNWCSDVERKTYWPL
FLLTGFTGFDGDF*

spliced messenger RNA

>Gchil10056.t1 ID=Gchil10056.t1|Name=Gchil10056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at tig00004442_pilon:639553..641394+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCTGACAGTCGAGCACATCCGGCGGGAGAGTTGGCCGCCGTATT
GGATGAGTCTCTTGGAGGCACCGATGTTCCGAACGGCGCTCATCCACCCT
CAACGCTTGATGATACCCAAATTGAGAAACTCGCCCAGCAGCAAGAACTC
TCCCGTCGCGCTTTTGACGCCGTCTTGGAGAAGAGCTCGCAACAGTGGCG
CGCTGAAACCGATCCCAGGGTGCTTGCTGATGCGCTTGTCACCATTCTTG
ATCAAATCAGAGGCCCAGCCCTCTCGCGAGTTGGTCCTCACACTCAGCAA
CACCAACCGTCGTCTTCGCAGCCCGATGCACACCAAGCGGATGCAAATGA
TCACGATATCAATATGGACCACTATGATGACGCAATCGATACTCCTTTAC
AAAATGGTCATTCGTCTGATAAAAAACACAGCTCGTCCTCTATTGCCGCC
AGAGCCAAGTATATCCCGTTGCGCTTGTCACAGACCGAACGCAAAATTCT
TCGCTTGGTTGAAGCCGCCCTCAATGTCAGTGAGTATACCGATGTCGTCG
ATGTGCTGGCTACTTCGCGCATGAAGACCAGACAGAGAGTACACACCCAG
ATTCGAGATTTGTGCTCCATCCTCACCGGCCTGGCAGTTGCCATGGATTA
TAACAAGGGCCAGAAGCTTGTCAAGGACCGTGACTTTGCTGAAAACCAGC
CTTTCTTTCAAACTGCATTTGAGATTGCTCGTCGCCATAAAGTCGCTAAT
CCTGAAAAGAGCCGGGACATTTATGGAAAACTTATTCATATGTTGCAAGA
CTCAGTCAATGATGAAATTGTGCGACTCTTGGAGTTCTCATGCGTCAAAC
CCCTCATTACGGTCGCTACCTATTTGGAAGAACGTGGGGGTCTTGAGCTT
TTGGACGATCCTCTTATTGAAAAAGCCACGGCCGAAATCATTCCTGATGG
AAAGAATCGGCGCGCTGTACAGCGTGAGATTCAGGCGAAAGAACATGCTG
TATCTGTGCTCGCCAAGCGATACAAAAACGGTCGCATTCTCGATGAGGAC
GAAGTGCGCCGTTGCTTGTATTCTATTGGAGACAATAATGCGTACTTGCG
CGGTGCTCGCGATCCTTGCGATACTATGATCAAATACCTTCATGCCTACT
TTAAACCTGAACGACCCGCTGACAAACGTGATAGTATCGCCATCACTGAA
GGTGTGGCAGGCGCCCGCCTAACGCATGACCATGTCAGACAATTTCGATA
CGTATTTCAGAGTTTGGCTTTGTGGAGAGAGGTTTGTCATGAAATGTACA
GACTGTGGTATCTCAGTGAAAAGGACTTGCTTGATGCCAAGAATCCTTAT
CACCTGCGAAATACTGGTCAGGGTCTCAACAGAGTACAGGCAGCCCCTAA
CGTTTCACGTGCCATGTATGAAATTTTAAATACAGTGCAAAGACGGGTCG
GAAAATGGGTAGGCTCATCCGTTGTGCATTTGGGAGACTATAACGTTCCA
AACGCTCTTACCTTTATCGACAAGTATGCTCAAGTTCAAAGAATTTTGGG
GCCCTTGATCACATGCATCCGTCGTATCGGTGAGATCGCTGCCAATGACA
AGAGTATTCAAAAGTATATCAATGAAACTTTTGGAGGGGTGGAGCCAGCT
CGAAAACTTATTTTGAGAGACTTCTTTAGACATGCCTTTGATGGCAGCGG
TGCAAGCGATTGGTTTAGTGCGGGTTCTTGTATTGATGGGCGACTCACTA
GCGCGTGGAATTGGTGCAGTGATGTTGAGAGGAAGACATATTGGCCCCTG
TTTTTGCTCACCGGGTTTACTGGATTTGACGGTGACTTTTGA

protein sequence of Gchil10056.t1

>Gchil10056.t1 ID=Gchil10056.t1|Name=Gchil10056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=614bp
MGADSRAHPAGELAAVLDESLGGTDVPNGAHPPSTLDDTQIEKLAQQQEL
SRRAFDAVLEKSSQQWRAETDPRVLADALVTILDQIRGPALSRVGPHTQQ
HQPSSSQPDAHQADANDHDINMDHYDDAIDTPLQNGHSSDKKHSSSSIAA
RAKYIPLRLSQTERKILRLVEAALNVSEYTDVVDVLATSRMKTRQRVHTQ
IRDLCSILTGLAVAMDYNKGQKLVKDRDFAENQPFFQTAFEIARRHKVAN
PEKSRDIYGKLIHMLQDSVNDEIVRLLEFSCVKPLITVATYLEERGGLEL
LDDPLIEKATAEIIPDGKNRRAVQREIQAKEHAVSVLAKRYKNGRILDED
EVRRCLYSIGDNNAYLRGARDPCDTMIKYLHAYFKPERPADKRDSIAITE
GVAGARLTHDHVRQFRYVFQSLALWREVCHEMYRLWYLSEKDLLDAKNPY
HLRNTGQGLNRVQAAPNVSRAMYEILNTVQRRVGKWVGSSVVHLGDYNVP
NALTFIDKYAQVQRILGPLITCIRRIGEIAANDKSIQKYINETFGGVEPA
RKLILRDFFRHAFDGSGASDWFSAGSCIDGRLTSAWNWCSDVERKTYWPL
FLLTGFTGFDGDF*

mRNA from alignment at tig00004442_pilon:639553..641394+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10056.t1 ID=Gchil10056.t1|Name=Gchil10056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at tig00004442_pilon:639553..641394+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCTGACAGTCGAGCACATCCGGCGGGAGAGTTGGCCGCCGTATT
GGATGAGTCTCTTGGAGGCACCGATGTTCCGAACGGCGCTCATCCACCCT
CAACGCTTGATGATACCCAAATTGAGAAACTCGCCCAGCAGCAAGAACTC
TCCCGTCGCGCTTTTGACGCCGTCTTGGAGAAGAGCTCGCAACAGTGGCG
CGCTGAAACCGATCCCAGGGTGCTTGCTGATGCGCTTGTCACCATTCTTG
ATCAAATCAGAGGCCCAGCCCTCTCGCGAGTTGGTCCTCACACTCAGCAA
CACCAACCGTCGTCTTCGCAGCCCGATGCACACCAAGCGGATGCAAATGA
TCACGATATCAATATGGACCACTATGATGACGCAATCGATACTCCTTTAC
AAAATGGTCATTCGTCTGATAAAAAACACAGCTCGTCCTCTATTGCCGCC
AGAGCCAAGTATATCCCGTTGCGCTTGTCACAGACCGAACGCAAAATTCT
TCGCTTGGTTGAAGCCGCCCTCAATGTCAGTGAGTATACCGATGTCGTCG
ATGTGCTGGCTACTTCGCGCATGAAGACCAGACAGAGAGTACACACCCAG
ATTCGAGATTTGTGCTCCATCCTCACCGGCCTGGCAGTTGCCATGGATTA
TAACAAGGGCCAGAAGCTTGTCAAGGACCGTGACTTTGCTGAAAACCAGC
CTTTCTTTCAAACTGCATTTGAGATTGCTCGTCGCCATAAAGTCGCTAAT
CCTGAAAAGAGCCGGGACATTTATGGAAAACTTATTCATATGTTGCAAGA
CTCAGTCAATGATGAAATTGTGCGACTCTTGGAGTTCTCATGCGTCAAAC
CCCTCATTACGGTCGCTACCTATTTGGAAGAACGTGGGGGTCTTGAGCTT
TTGGACGATCCTCTTATTGAAAAAGCCACGGCCGAAATCATTCCTGATGG
AAAGAATCGGCGCGCTGTACAGCGTGAGATTCAGGCGAAAGAACATGCTG
TATCTGTGCTCGCCAAGCGATACAAAAACGGTCGCATTCTCGATGAGGAC
GAAGTGCGCCGTTGCTTGTATTCTATTGGAGACAATAATGCGTACTTGCG
CGGTGCTCGCGATCCTTGCGATACTATGATCAAATACCTTCATGCCTACT
TTAAACCTGAACGACCCGCTGACAAACGTGATAGTATCGCCATCACTGAA
GGTGTGGCAGGCGCCCGCCTAACGCATGACCATGTCAGACAATTTCGATA
CGTATTTCAGAGTTTGGCTTTGTGGAGAGAGGTTTGTCATGAAATGTACA
GACTGTGGTATCTCAGTGAAAAGGACTTGCTTGATGCCAAGAATCCTTAT
CACCTGCGAAATACTGGTCAGGGTCTCAACAGAGTACAGGCAGCCCCTAA
CGTTTCACGTGCCATGTATGAAATTTTAAATACAGTGCAAAGACGGGTCG
GAAAATGGGTAGGCTCATCCGTTGTGCATTTGGGAGACTATAACGTTCCA
AACGCTCTTACCTTTATCGACAAGTATGCTCAAGTTCAAAGAATTTTGGG
GCCCTTGATCACATGCATCCGTCGTATCGGTGAGATCGCTGCCAATGACA
AGAGTATTCAAAAGTATATCAATGAAACTTTTGGAGGGGTGGAGCCAGCT
CGAAAACTTATTTTGAGAGACTTCTTTAGACATGCCTTTGATGGCAGCGG
TGCAAGCGATTGGTTTAGTGCGGGTTCTTGTATTGATGGGCGACTCACTA
GCGCGTGGAATTGGTGCAGTGATGTTGAGAGGAAGACATATTGGCCCCTG
TTTTTGCTCACCGGGTTTACTGGATTTGACGGTGACTTTTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:639553..641394+

>Gchil10056.t1 ID=Gchil10056.t1|Name=Gchil10056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1842bp|location=Sequence derived from alignment at tig00004442_pilon:639553..641394+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCTGACAGTCGAGCACATCCGGCGGGAGAGTTGGCCGCCGTATT
GGATGAGTCTCTTGGAGGCACCGATGTTCCGAACGGCGCTCATCCACCCT
CAACGCTTGATGATACCCAAATTGAGAAACTCGCCCAGCAGCAAGAACTC
TCCCGTCGCGCTTTTGACGCCGTCTTGGAGAAGAGCTCGCAACAGTGGCG
CGCTGAAACCGATCCCAGGGTGCTTGCTGATGCGCTTGTCACCATTCTTG
ATCAAATCAGAGGCCCAGCCCTCTCGCGAGTTGGTCCTCACACTCAGCAA
CACCAACCGTCGTCTTCGCAGCCCGATGCACACCAAGCGGATGCAAATGA
TCACGATATCAATATGGACCACTATGATGACGCAATCGATACTCCTTTAC
AAAATGGTCATTCGTCTGATAAAAAACACAGCTCGTCCTCTATTGCCGCC
AGAGCCAAGTATATCCCGTTGCGCTTGTCACAGACCGAACGCAAAATTCT
TCGCTTGGTTGAAGCCGCCCTCAATGTCAGTGAGTATACCGATGTCGTCG
ATGTGCTGGCTACTTCGCGCATGAAGACCAGACAGAGAGTACACACCCAG
ATTCGAGATTTGTGCTCCATCCTCACCGGCCTGGCAGTTGCCATGGATTA
TAACAAGGGCCAGAAGCTTGTCAAGGACCGTGACTTTGCTGAAAACCAGC
CTTTCTTTCAAACTGCATTTGAGATTGCTCGTCGCCATAAAGTCGCTAAT
CCTGAAAAGAGCCGGGACATTTATGGAAAACTTATTCATATGTTGCAAGA
CTCAGTCAATGATGAAATTGTGCGACTCTTGGAGTTCTCATGCGTCAAAC
CCCTCATTACGGTCGCTACCTATTTGGAAGAACGTGGGGGTCTTGAGCTT
TTGGACGATCCTCTTATTGAAAAAGCCACGGCCGAAATCATTCCTGATGG
AAAGAATCGGCGCGCTGTACAGCGTGAGATTCAGGCGAAAGAACATGCTG
TATCTGTGCTCGCCAAGCGATACAAAAACGGTCGCATTCTCGATGAGGAC
GAAGTGCGCCGTTGCTTGTATTCTATTGGAGACAATAATGCGTACTTGCG
CGGTGCTCGCGATCCTTGCGATACTATGATCAAATACCTTCATGCCTACT
TTAAACCTGAACGACCCGCTGACAAACGTGATAGTATCGCCATCACTGAA
GGTGTGGCAGGCGCCCGCCTAACGCATGACCATGTCAGACAATTTCGATA
CGTATTTCAGAGTTTGGCTTTGTGGAGAGAGGTTTGTCATGAAATGTACA
GACTGTGGTATCTCAGTGAAAAGGACTTGCTTGATGCCAAGAATCCTTAT
CACCTGCGAAATACTGGTCAGGGTCTCAACAGAGTACAGGCAGCCCCTAA
CGTTTCACGTGCCATGTATGAAATTTTAAATACAGTGCAAAGACGGGTCG
GAAAATGGGTAGGCTCATCCGTTGTGCATTTGGGAGACTATAACGTTCCA
AACGCTCTTACCTTTATCGACAAGTATGCTCAAGTTCAAAGAATTTTGGG
GCCCTTGATCACATGCATCCGTCGTATCGGTGAGATCGCTGCCAATGACA
AGAGTATTCAAAAGTATATCAATGAAACTTTTGGAGGGGTGGAGCCAGCT
CGAAAACTTATTTTGAGAGACTTCTTTAGACATGCCTTTGATGGCAGCGG
TGCAAGCGATTGGTTTAGTGCGGGTTCTTGTATTGATGGGCGACTCACTA
GCGCGTGGAATTGGTGCAGTGATGTTGAGAGGAAGACATATTGGCCCCTG
TTTTTGCTCACCGGGTTTACTGGATTTGACGGTGACTTTTGA