Gchil10054.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10054.t1
Unique NameGchil10054.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:582831..583597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog211165.AJLN01000085_gene1661
PFAMsABC_tran
Max annot lvl1117|Cyanobacteria
KEGG koko:K16787
KEGG TC3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35
KEGG Pathwayko02010,map02010
KEGG ModuleM00582
Evalue3.71e-45
EggNOG OGsCOG1122@1|root,COG1122@2|Bacteria,1G1A8@1117|Cyanobacteria,1JHTW@1189|Stigonemataceae
DescriptionAAA domain, putative AbiEii toxin, Type IV TA system
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10054Gchil10054Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 582831..583597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10054.t1Gchil10054.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 582831..583597 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10054.t1.stop1Gchil10054.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 582831..582833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10054.t1.CDS1Gchil10054.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 582831..583447 -
Gchil10054.t1.CDS2Gchil10054.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 583528..583597 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10054.t1.exon1Gchil10054.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 582831..583447 -
Gchil10054.t1.exon2Gchil10054.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 583528..583597 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10054.t1.intron1Gchil10054.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 583448..583527 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10054.t1.start1Gchil10054.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 583595..583597 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10054.t1 ID=Gchil10054.t1|Name=Gchil10054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=229bp
MNFKVFPNEFVLLIGANGAGKSTVISMMTGLTKLRPRQGTILWDGQVIKA
KRLLDNIGLILQNPANYLFLPTVLDELIMGRPEKTPDDVREVLAAVGLQN
VSLMSCPRSLSGGQVRRLALADQLMREPKPSLFALDEPLAGVDWTGRREI
SDLLGSLKRKFAIVIISHEPGDLLKYADRVVEIGRGGAHEIDPHIVAKAI
RVRAKRKKEAKARARKEAMEYLQRRGIE*
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spliced messenger RNA

>Gchil10054.t1 ID=Gchil10054.t1|Name=Gchil10054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00004442_pilon:582831..583597- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTCAAGGTCTTTCCAAATGAGTTCGTGCTACTCATTGGGGCAAA
CGGAGCCGGAAAGTCGACAGTCATTAGCATGATGACTGGTCTCACAAAGT
TAAGGCCACGACAAGGCACCATTTTGTGGGATGGCCAAGTTATCAAGGCA
AAGCGCTTACTAGATAACATTGGGCTCATTCTGCAGAATCCTGCCAACTA
CTTATTTCTGCCGACTGTGCTTGATGAGCTTATAATGGGGCGCCCAGAAA
AGACTCCGGACGACGTTCGTGAAGTACTGGCGGCTGTCGGTTTGCAAAAC
GTTTCTCTCATGAGTTGTCCGCGCTCGCTCAGTGGGGGACAAGTACGGCG
ATTGGCCCTAGCAGACCAGTTGATGCGGGAGCCAAAACCATCTCTGTTTG
CTTTAGACGAGCCGTTGGCAGGAGTTGACTGGACTGGACGTCGAGAGATT
TCCGATCTCCTCGGATCTCTCAAGAGAAAATTTGCCATCGTTATCATTTC
TCACGAACCAGGAGATCTTTTGAAGTATGCGGATAGGGTGGTTGAAATTG
GCCGAGGAGGCGCACATGAAATTGACCCGCACATCGTAGCGAAGGCTATT
CGTGTGCGTGCCAAAAGAAAAAAGGAAGCGAAAGCCAGAGCCCGCAAGGA
AGCTATGGAGTACCTCCAGCGACGTGGGATAGAATGA
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protein sequence of Gchil10054.t1

>Gchil10054.t1 ID=Gchil10054.t1|Name=Gchil10054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=229bp
MNFKVFPNEFVLLIGANGAGKSTVISMMTGLTKLRPRQGTILWDGQVIKA
KRLLDNIGLILQNPANYLFLPTVLDELIMGRPEKTPDDVREVLAAVGLQN
VSLMSCPRSLSGGQVRRLALADQLMREPKPSLFALDEPLAGVDWTGRREI
SDLLGSLKRKFAIVIISHEPGDLLKYADRVVEIGRGGAHEIDPHIVAKAI
RVRAKRKKEAKARARKEAMEYLQRRGIE*
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mRNA from alignment at tig00004442_pilon:582831..583597-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10054.t1 ID=Gchil10054.t1|Name=Gchil10054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=767bp|location=Sequence derived from alignment at tig00004442_pilon:582831..583597- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTTCAAGGTCTTTCCAAATGAGTTCGTGCTACTCATTGGGGCAAA
CGGAGCCGGAAAGTCGACAGGTGAGATAATGCTGCACACCACAGTCCTTT
GAATATGTACTCACACACACTTCTTATTTTCTCACCAATTCTTGTGCCAG
TCATTAGCATGATGACTGGTCTCACAAAGTTAAGGCCACGACAAGGCACC
ATTTTGTGGGATGGCCAAGTTATCAAGGCAAAGCGCTTACTAGATAACAT
TGGGCTCATTCTGCAGAATCCTGCCAACTACTTATTTCTGCCGACTGTGC
TTGATGAGCTTATAATGGGGCGCCCAGAAAAGACTCCGGACGACGTTCGT
GAAGTACTGGCGGCTGTCGGTTTGCAAAACGTTTCTCTCATGAGTTGTCC
GCGCTCGCTCAGTGGGGGACAAGTACGGCGATTGGCCCTAGCAGACCAGT
TGATGCGGGAGCCAAAACCATCTCTGTTTGCTTTAGACGAGCCGTTGGCA
GGAGTTGACTGGACTGGACGTCGAGAGATTTCCGATCTCCTCGGATCTCT
CAAGAGAAAATTTGCCATCGTTATCATTTCTCACGAACCAGGAGATCTTT
TGAAGTATGCGGATAGGGTGGTTGAAATTGGCCGAGGAGGCGCACATGAA
ATTGACCCGCACATCGTAGCGAAGGCTATTCGTGTGCGTGCCAAAAGAAA
AAAGGAAGCGAAAGCCAGAGCCCGCAAGGAAGCTATGGAGTACCTCCAGC
GACGTGGGATAGAATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:582831..583597-

>Gchil10054.t1 ID=Gchil10054.t1|Name=Gchil10054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00004442_pilon:582831..583597- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTTCAAGGTCTTTCCAAATGAGTTCGTGCTACTCATTGGGGCAAA
CGGAGCCGGAAAGTCGACAGTCATTAGCATGATGACTGGTCTCACAAAGT
TAAGGCCACGACAAGGCACCATTTTGTGGGATGGCCAAGTTATCAAGGCA
AAGCGCTTACTAGATAACATTGGGCTCATTCTGCAGAATCCTGCCAACTA
CTTATTTCTGCCGACTGTGCTTGATGAGCTTATAATGGGGCGCCCAGAAA
AGACTCCGGACGACGTTCGTGAAGTACTGGCGGCTGTCGGTTTGCAAAAC
GTTTCTCTCATGAGTTGTCCGCGCTCGCTCAGTGGGGGACAAGTACGGCG
ATTGGCCCTAGCAGACCAGTTGATGCGGGAGCCAAAACCATCTCTGTTTG
CTTTAGACGAGCCGTTGGCAGGAGTTGACTGGACTGGACGTCGAGAGATT
TCCGATCTCCTCGGATCTCTCAAGAGAAAATTTGCCATCGTTATCATTTC
TCACGAACCAGGAGATCTTTTGAAGTATGCGGATAGGGTGGTTGAAATTG
GCCGAGGAGGCGCACATGAAATTGACCCGCACATCGTAGCGAAGGCTATT
CGTGTGCGTGCCAAAAGAAAAAAGGAAGCGAAAGCCAGAGCCCGCAAGGA
AGCTATGGAGTACCTCCAGCGACGTGGGATAGAATGA
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