Gchil10053.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10053.t1
Unique NameGchil10053.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:580213..580953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173020.Cha6605_5781
Preferred namessb
PFAMsSSB
Max annot lvl1117|Cyanobacteria
KEGG koko:K03111
KEGG Pathwayko03030,ko03430,ko03440,map03030,map03430,map03440
Evalue1.08e-18
EggNOG OGsCOG0629@1|root,COG0629@2|Bacteria,1G6JH@1117|Cyanobacteria
DescriptionSingle-stranded DNA-binding protein
COG categoryL
BRITEko00000,ko00001,ko03029,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10053Gchil10053Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 580213..580953 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10053.t1.stop1Gchil10053.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 580213..580215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10053.t1.CDS1Gchil10053.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 580213..580953 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10053.t1.exon1Gchil10053.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 580213..580953 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10053.t1.start1Gchil10053.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 580951..580953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10053.t1Gchil10053.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 580213..580953 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10053.t1 ID=Gchil10053.t1|Name=Gchil10053.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=247bp
MVVGKHIRAPRRGAFILCPLRIHRAYNPLPGGKRSKRPFLGFQIPYSKRT
WRPITVPVCCETPRFEDDDSKQVEEHNGTIWDFEFDEDELVDIEPDPSFP
KLNVVALVGRLGADPVFKITSSGAELCTFSMAVTHDYDPNDSDEDRTSWF
DIEAWGGLAKKASRAKKGIRVGVSGSLAVNFWTGRDGLSREDPFIRASTF
EILQSRSEHIPSSRSDGNNDNREPSDATPTTDPYFNISGNLRDLPF*
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spliced messenger RNA

>Gchil10053.t1 ID=Gchil10053.t1|Name=Gchil10053.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00004442_pilon:580213..580953- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCGGGAAGCATATCAGAGCGCCTCGCAGAGGGGCATTTATTCT
GTGTCCGTTGAGAATTCATCGTGCATACAACCCTCTACCTGGTGGCAAAC
GGAGTAAAAGACCTTTCCTTGGATTTCAGATACCATATTCGAAACGAACA
TGGCGACCTATCACCGTTCCTGTATGCTGCGAAACCCCACGCTTTGAGGA
CGACGATAGTAAACAAGTTGAAGAACACAATGGAACGATATGGGACTTTG
AATTTGACGAAGATGAGCTCGTCGATATCGAGCCCGACCCCTCGTTTCCT
AAACTGAACGTAGTAGCCCTTGTGGGTCGACTTGGAGCTGACCCAGTGTT
TAAGATAACCTCCTCAGGCGCGGAGTTATGTACATTTTCGATGGCTGTGA
CCCATGATTACGACCCCAATGATTCTGACGAAGATAGGACGAGTTGGTTC
GACATTGAAGCGTGGGGAGGTTTGGCCAAAAAGGCTTCCAGAGCAAAAAA
GGGCATTCGGGTTGGGGTTAGCGGAAGCCTAGCTGTCAATTTCTGGACTG
GAAGGGATGGATTAAGTCGAGAGGACCCGTTCATTAGAGCAAGTACTTTT
GAAATACTTCAGTCTCGCTCAGAACACATACCGTCTTCAAGGAGCGATGG
AAATAACGATAATCGAGAGCCATCCGACGCGACTCCTACAACTGACCCGT
ATTTTAACATAAGCGGAAACCTTCGAGATCTTCCATTCTAA
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protein sequence of Gchil10053.t1

>Gchil10053.t1 ID=Gchil10053.t1|Name=Gchil10053.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=247bp
MVVGKHIRAPRRGAFILCPLRIHRAYNPLPGGKRSKRPFLGFQIPYSKRT
WRPITVPVCCETPRFEDDDSKQVEEHNGTIWDFEFDEDELVDIEPDPSFP
KLNVVALVGRLGADPVFKITSSGAELCTFSMAVTHDYDPNDSDEDRTSWF
DIEAWGGLAKKASRAKKGIRVGVSGSLAVNFWTGRDGLSREDPFIRASTF
EILQSRSEHIPSSRSDGNNDNREPSDATPTTDPYFNISGNLRDLPF*
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mRNA from alignment at tig00004442_pilon:580213..580953-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10053.t1 ID=Gchil10053.t1|Name=Gchil10053.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00004442_pilon:580213..580953- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGTCGGGAAGCATATCAGAGCGCCTCGCAGAGGGGCATTTATTCT
GTGTCCGTTGAGAATTCATCGTGCATACAACCCTCTACCTGGTGGCAAAC
GGAGTAAAAGACCTTTCCTTGGATTTCAGATACCATATTCGAAACGAACA
TGGCGACCTATCACCGTTCCTGTATGCTGCGAAACCCCACGCTTTGAGGA
CGACGATAGTAAACAAGTTGAAGAACACAATGGAACGATATGGGACTTTG
AATTTGACGAAGATGAGCTCGTCGATATCGAGCCCGACCCCTCGTTTCCT
AAACTGAACGTAGTAGCCCTTGTGGGTCGACTTGGAGCTGACCCAGTGTT
TAAGATAACCTCCTCAGGCGCGGAGTTATGTACATTTTCGATGGCTGTGA
CCCATGATTACGACCCCAATGATTCTGACGAAGATAGGACGAGTTGGTTC
GACATTGAAGCGTGGGGAGGTTTGGCCAAAAAGGCTTCCAGAGCAAAAAA
GGGCATTCGGGTTGGGGTTAGCGGAAGCCTAGCTGTCAATTTCTGGACTG
GAAGGGATGGATTAAGTCGAGAGGACCCGTTCATTAGAGCAAGTACTTTT
GAAATACTTCAGTCTCGCTCAGAACACATACCGTCTTCAAGGAGCGATGG
AAATAACGATAATCGAGAGCCATCCGACGCGACTCCTACAACTGACCCGT
ATTTTAACATAAGCGGAAACCTTCGAGATCTTCCATTCTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:580213..580953-

>Gchil10053.t1 ID=Gchil10053.t1|Name=Gchil10053.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00004442_pilon:580213..580953- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGTCGGGAAGCATATCAGAGCGCCTCGCAGAGGGGCATTTATTCT
GTGTCCGTTGAGAATTCATCGTGCATACAACCCTCTACCTGGTGGCAAAC
GGAGTAAAAGACCTTTCCTTGGATTTCAGATACCATATTCGAAACGAACA
TGGCGACCTATCACCGTTCCTGTATGCTGCGAAACCCCACGCTTTGAGGA
CGACGATAGTAAACAAGTTGAAGAACACAATGGAACGATATGGGACTTTG
AATTTGACGAAGATGAGCTCGTCGATATCGAGCCCGACCCCTCGTTTCCT
AAACTGAACGTAGTAGCCCTTGTGGGTCGACTTGGAGCTGACCCAGTGTT
TAAGATAACCTCCTCAGGCGCGGAGTTATGTACATTTTCGATGGCTGTGA
CCCATGATTACGACCCCAATGATTCTGACGAAGATAGGACGAGTTGGTTC
GACATTGAAGCGTGGGGAGGTTTGGCCAAAAAGGCTTCCAGAGCAAAAAA
GGGCATTCGGGTTGGGGTTAGCGGAAGCCTAGCTGTCAATTTCTGGACTG
GAAGGGATGGATTAAGTCGAGAGGACCCGTTCATTAGAGCAAGTACTTTT
GAAATACTTCAGTCTCGCTCAGAACACATACCGTCTTCAAGGAGCGATGG
AAATAACGATAATCGAGAGCCATCCGACGCGACTCCTACAACTGACCCGT
ATTTTAACATAAGCGGAAACCTTCGAGATCTTCCATTCTAA
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