Gchil10051.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10051.t1
Unique NameGchil10051.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:575656..576651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10029.XP_007627437.1
Preferred nameRFC2
PFAMsAAA,DNA_pol3_delta2,Rep_fac_C
Max annot lvl33208|Metazoa
KEGG koko:K10755
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0017076,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019985,GO:0022402,GO:0022616,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031391,GO:0031570,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042276,GO:0042592,GO:0042769,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045786,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0097367,GO:0098813,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904949,GO:2000112,GO:2000278,GO:2000573
Evalue1.91e-137
EggNOG OGsCOG0470@1|root,KOG0991@2759|Eukaryota,38G2T@33154|Opisthokonta,3BDV4@33208|Metazoa,3CR6N@33213|Bilateria,487RQ@7711|Chordata,48Y4R@7742|Vertebrata,3J8SB@40674|Mammalia,35DHF@314146|Euarchontoglires,4PX7J@9989|Rodentia
Descriptionreplication factor C
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10051Gchil10051Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 575656..576651 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10051.t1.stop1Gchil10051.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 575656..575658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10051.t1.CDS1Gchil10051.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 575656..576651 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10051.t1.exon1Gchil10051.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 575656..576651 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10051.t1.start1Gchil10051.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 576649..576651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10051.t1Gchil10051.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 575656..576651 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10051.t1 ID=Gchil10051.t1|Name=Gchil10051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=332bp
MQPASKPQSKAIPQHTYELPWVEKYRPNTLDQVVGNPDVLDRMRVIAKNG
NMPNILLAGPPGCGKTTSIMALARETLGSQLKNAVLELNASDDRGIDTVR
TKIKMFAQTKVTLPPGRHKIVLLDEADSMTPAAQQALRRTMELHSNTTRF
ALACNLSSKIIEPIQSRCAVVRFRRLTDEQIATRLKTVLDSEKAPHDQSG
IDAAVFTADGDMRIALNNSQSTFNGFGFVSEKNLNKVCDQPHPKVAAEFL
TLCVEKDIDKALAKVLFLFNQGYSPLDIIQTIFRVARTLKVEKEITKLNM
LREIGLIHMRMAEGVTSPIQLAALASRLCQA*
back to top

spliced messenger RNA

>Gchil10051.t1 ID=Gchil10051.t1|Name=Gchil10051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00004442_pilon:575656..576651- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGGCCAGTAAGCCGCAGTCCAAGGCAATCCCGCAGCACACGTA
CGAACTCCCATGGGTTGAAAAGTACCGCCCCAACACTCTCGATCAAGTCG
TGGGCAACCCCGACGTCCTAGATCGAATGCGCGTCATCGCCAAGAACGGA
AACATGCCCAATATCCTGTTGGCCGGCCCACCCGGCTGTGGGAAAACAAC
TTCCATCATGGCTCTAGCTCGCGAGACGCTCGGAAGTCAACTGAAGAACG
CCGTGCTAGAGCTCAACGCCTCTGATGACCGAGGCATTGATACCGTGCGA
ACAAAGATTAAAATGTTTGCCCAGACAAAGGTAACACTCCCGCCGGGACG
TCATAAGATTGTTCTGCTGGATGAGGCCGACTCCATGACGCCCGCCGCGC
AGCAAGCTTTGAGGCGAACAATGGAGCTGCACAGTAACACCACCCGATTC
GCGCTTGCCTGCAACCTGTCGTCCAAGATCATAGAGCCGATCCAGAGTCG
TTGCGCCGTTGTGCGATTTCGTCGACTTACGGATGAGCAAATAGCTACCC
GACTAAAGACAGTGCTTGACTCAGAAAAGGCTCCTCATGACCAGAGTGGA
ATCGATGCCGCTGTATTCACTGCCGATGGCGACATGCGTATTGCGCTCAA
TAACTCTCAAAGCACCTTCAACGGCTTTGGGTTTGTCAGTGAGAAAAATC
TCAACAAGGTCTGCGACCAGCCACATCCAAAAGTAGCCGCCGAGTTCCTC
ACGCTGTGCGTGGAGAAGGACATTGACAAAGCCCTGGCAAAGGTGTTGTT
TTTGTTCAACCAGGGATACTCACCTCTTGACATCATTCAAACTATTTTTC
GCGTCGCTAGAACCTTGAAGGTTGAAAAAGAAATCACTAAGCTCAACATG
TTGAGAGAAATAGGTCTGATCCACATGAGAATGGCCGAAGGTGTCACGTC
TCCTATTCAACTGGCTGCTCTTGCATCTCGTTTATGCCAGGCTTAG
back to top

protein sequence of Gchil10051.t1

>Gchil10051.t1 ID=Gchil10051.t1|Name=Gchil10051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=332bp
MQPASKPQSKAIPQHTYELPWVEKYRPNTLDQVVGNPDVLDRMRVIAKNG
NMPNILLAGPPGCGKTTSIMALARETLGSQLKNAVLELNASDDRGIDTVR
TKIKMFAQTKVTLPPGRHKIVLLDEADSMTPAAQQALRRTMELHSNTTRF
ALACNLSSKIIEPIQSRCAVVRFRRLTDEQIATRLKTVLDSEKAPHDQSG
IDAAVFTADGDMRIALNNSQSTFNGFGFVSEKNLNKVCDQPHPKVAAEFL
TLCVEKDIDKALAKVLFLFNQGYSPLDIIQTIFRVARTLKVEKEITKLNM
LREIGLIHMRMAEGVTSPIQLAALASRLCQA*
back to top

mRNA from alignment at tig00004442_pilon:575656..576651-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10051.t1 ID=Gchil10051.t1|Name=Gchil10051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00004442_pilon:575656..576651- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCGGCCAGTAAGCCGCAGTCCAAGGCAATCCCGCAGCACACGTA
CGAACTCCCATGGGTTGAAAAGTACCGCCCCAACACTCTCGATCAAGTCG
TGGGCAACCCCGACGTCCTAGATCGAATGCGCGTCATCGCCAAGAACGGA
AACATGCCCAATATCCTGTTGGCCGGCCCACCCGGCTGTGGGAAAACAAC
TTCCATCATGGCTCTAGCTCGCGAGACGCTCGGAAGTCAACTGAAGAACG
CCGTGCTAGAGCTCAACGCCTCTGATGACCGAGGCATTGATACCGTGCGA
ACAAAGATTAAAATGTTTGCCCAGACAAAGGTAACACTCCCGCCGGGACG
TCATAAGATTGTTCTGCTGGATGAGGCCGACTCCATGACGCCCGCCGCGC
AGCAAGCTTTGAGGCGAACAATGGAGCTGCACAGTAACACCACCCGATTC
GCGCTTGCCTGCAACCTGTCGTCCAAGATCATAGAGCCGATCCAGAGTCG
TTGCGCCGTTGTGCGATTTCGTCGACTTACGGATGAGCAAATAGCTACCC
GACTAAAGACAGTGCTTGACTCAGAAAAGGCTCCTCATGACCAGAGTGGA
ATCGATGCCGCTGTATTCACTGCCGATGGCGACATGCGTATTGCGCTCAA
TAACTCTCAAAGCACCTTCAACGGCTTTGGGTTTGTCAGTGAGAAAAATC
TCAACAAGGTCTGCGACCAGCCACATCCAAAAGTAGCCGCCGAGTTCCTC
ACGCTGTGCGTGGAGAAGGACATTGACAAAGCCCTGGCAAAGGTGTTGTT
TTTGTTCAACCAGGGATACTCACCTCTTGACATCATTCAAACTATTTTTC
GCGTCGCTAGAACCTTGAAGGTTGAAAAAGAAATCACTAAGCTCAACATG
TTGAGAGAAATAGGTCTGATCCACATGAGAATGGCCGAAGGTGTCACGTC
TCCTATTCAACTGGCTGCTCTTGCATCTCGTTTATGCCAGGCTTAG
back to top

Coding sequence (CDS) from alignment at tig00004442_pilon:575656..576651-

>Gchil10051.t1 ID=Gchil10051.t1|Name=Gchil10051.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00004442_pilon:575656..576651- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCGGCCAGTAAGCCGCAGTCCAAGGCAATCCCGCAGCACACGTA
CGAACTCCCATGGGTTGAAAAGTACCGCCCCAACACTCTCGATCAAGTCG
TGGGCAACCCCGACGTCCTAGATCGAATGCGCGTCATCGCCAAGAACGGA
AACATGCCCAATATCCTGTTGGCCGGCCCACCCGGCTGTGGGAAAACAAC
TTCCATCATGGCTCTAGCTCGCGAGACGCTCGGAAGTCAACTGAAGAACG
CCGTGCTAGAGCTCAACGCCTCTGATGACCGAGGCATTGATACCGTGCGA
ACAAAGATTAAAATGTTTGCCCAGACAAAGGTAACACTCCCGCCGGGACG
TCATAAGATTGTTCTGCTGGATGAGGCCGACTCCATGACGCCCGCCGCGC
AGCAAGCTTTGAGGCGAACAATGGAGCTGCACAGTAACACCACCCGATTC
GCGCTTGCCTGCAACCTGTCGTCCAAGATCATAGAGCCGATCCAGAGTCG
TTGCGCCGTTGTGCGATTTCGTCGACTTACGGATGAGCAAATAGCTACCC
GACTAAAGACAGTGCTTGACTCAGAAAAGGCTCCTCATGACCAGAGTGGA
ATCGATGCCGCTGTATTCACTGCCGATGGCGACATGCGTATTGCGCTCAA
TAACTCTCAAAGCACCTTCAACGGCTTTGGGTTTGTCAGTGAGAAAAATC
TCAACAAGGTCTGCGACCAGCCACATCCAAAAGTAGCCGCCGAGTTCCTC
ACGCTGTGCGTGGAGAAGGACATTGACAAAGCCCTGGCAAAGGTGTTGTT
TTTGTTCAACCAGGGATACTCACCTCTTGACATCATTCAAACTATTTTTC
GCGTCGCTAGAACCTTGAAGGTTGAAAAAGAAATCACTAAGCTCAACATG
TTGAGAGAAATAGGTCTGATCCACATGAGAATGGCCGAAGGTGTCACGTC
TCCTATTCAACTGGCTGCTCTTGCATCTCGTTTATGCCAGGCTTAG
back to top