Gchil10049.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10049.t1
Unique NameGchil10049.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:569443..570611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006819703.1
Preferred nameGPN2
PFAMsATP_bind_1
Max annot lvl33208|Metazoa
KEGG koko:K06883
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0044424,GO:0044464
Evalue4.03e-100
EggNOG OGsCOG1100@1|root,KOG1533@2759|Eukaryota,38QUZ@33154|Opisthokonta,3BH8C@33208|Metazoa,3CU5D@33213|Bilateria
DescriptionGTPase activity
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10049Gchil10049Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 569443..570611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10049.t1Gchil10049.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 569443..570611 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10049.t1.start1Gchil10049.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 569443..569445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10049.t1.CDS1Gchil10049.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 569443..569537 +
Gchil10049.t1.CDS2Gchil10049.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 569649..569946 +
Gchil10049.t1.CDS3Gchil10049.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 570042..570198 +
Gchil10049.t1.CDS4Gchil10049.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 570289..570611 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10049.t1.exon1Gchil10049.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 569443..569537 +
Gchil10049.t1.exon2Gchil10049.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 569649..569946 +
Gchil10049.t1.exon3Gchil10049.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 570042..570198 +
Gchil10049.t1.exon4Gchil10049.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 570289..570611 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10049.t1.intron1Gchil10049.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 569538..569648 +
Gchil10049.t1.intron2Gchil10049.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 569947..570041 +
Gchil10049.t1.intron3Gchil10049.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 570199..570288 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10049.t1.stop1Gchil10049.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 570609..570611 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10049.t1 ID=Gchil10049.t1|Name=Gchil10049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MVGFGQVIVGAPGSGKTTYCAGLMQYFKGIGRDAVVFNMDPANDTLPYEA
AADISELVSVETVASELSLGPNGSLLYAMEFLEKNMTWLDKKLAENRGKY
VVFDFPGQIELYTHNECIRAIVQHLDKQGYRLTQVNMVDAHYCADASKFI
AVMLTSATMMLQLELPAINVLSKVDLIEQYGTLPRNLDFYTEGSDLGKLL
DELGQDPVLRKYTKLNKAIVDVVEDFPFVGYHTLDIQNKESVMRLVKAID
KSNGYMYANLDAQKVTYDVLVGKPEMDHRWVAEVQERYMK*
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spliced messenger RNA

>Gchil10049.t1 ID=Gchil10049.t1|Name=Gchil10049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004442_pilon:569443..570611+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGCTTTGGGCAGGTAATTGTTGGCGCCCCAGGTTCAGGAAAGAC
GACGTATTGTGCTGGCCTCATGCAGTATTTCAAGGGAATAGGAAGAGATG
CGGTTGTTTTTAATATGGATCCTGCTAACGATACATTACCGTATGAAGCT
GCCGCGGACATCTCCGAACTCGTTAGCGTCGAAACTGTCGCTTCTGAGCT
TTCTCTTGGTCCGAATGGAAGCTTGTTATACGCAATGGAGTTTCTTGAAA
AAAATATGACGTGGCTGGACAAGAAGCTCGCGGAGAACAGAGGAAAATAT
GTTGTGTTCGACTTTCCTGGACAAATTGAGCTTTATACTCATAATGAGTG
TATTCGAGCCATAGTTCAACATTTGGACAAACAGGGATATAGATTGACGC
AGGTGAATATGGTTGATGCTCACTATTGCGCAGATGCATCCAAGTTTATC
GCCGTTATGCTTACTTCAGCCACGATGATGTTGCAGCTTGAGCTTCCCGC
TATCAACGTCTTGTCAAAGGTTGACCTTATAGAACAATACGGTACTCTCC
CTCGAAACCTGGACTTTTACACAGAAGGAAGCGACCTTGGAAAACTTCTG
GATGAGTTAGGACAGGACCCTGTCCTTAGAAAATATACTAAGCTCAACAA
AGCAATCGTGGACGTTGTAGAGGACTTCCCATTTGTGGGATATCATACTT
TAGACATTCAAAACAAAGAAAGCGTAATGAGATTAGTCAAAGCCATTGAT
AAGTCGAATGGATATATGTACGCCAATCTGGACGCACAAAAAGTGACGTA
TGACGTGCTGGTCGGAAAACCGGAAATGGACCACAGATGGGTTGCCGAAG
TTCAGGAGCGCTATATGAAATGA
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protein sequence of Gchil10049.t1

>Gchil10049.t1 ID=Gchil10049.t1|Name=Gchil10049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MVGFGQVIVGAPGSGKTTYCAGLMQYFKGIGRDAVVFNMDPANDTLPYEA
AADISELVSVETVASELSLGPNGSLLYAMEFLEKNMTWLDKKLAENRGKY
VVFDFPGQIELYTHNECIRAIVQHLDKQGYRLTQVNMVDAHYCADASKFI
AVMLTSATMMLQLELPAINVLSKVDLIEQYGTLPRNLDFYTEGSDLGKLL
DELGQDPVLRKYTKLNKAIVDVVEDFPFVGYHTLDIQNKESVMRLVKAID
KSNGYMYANLDAQKVTYDVLVGKPEMDHRWVAEVQERYMK*
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mRNA from alignment at tig00004442_pilon:569443..570611+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10049.t1 ID=Gchil10049.t1|Name=Gchil10049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1169bp|location=Sequence derived from alignment at tig00004442_pilon:569443..570611+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGGCTTTGGGCAGGTAATTGTTGGCGCCCCAGGTTCAGGAAAGAC
GACGTATTGTGCTGGCCTCATGCAGTATTTCAAGGGAATAGGAAGGTAAG
AACAAGAACCTACGCACAGCTTATCACTTCTCGCAGAAATTTCCGTCGAC
TTCAGCCTAAACGCAATTGTTTTGACCTTTGTCAATTTTATTCTTCCTCA
CATCAGAGATGCGGTTGTTTTTAATATGGATCCTGCTAACGATACATTAC
CGTATGAAGCTGCCGCGGACATCTCCGAACTCGTTAGCGTCGAAACTGTC
GCTTCTGAGCTTTCTCTTGGTCCGAATGGAAGCTTGTTATACGCAATGGA
GTTTCTTGAAAAAAATATGACGTGGCTGGACAAGAAGCTCGCGGAGAACA
GAGGAAAATATGTTGTGTTCGACTTTCCTGGACAAATTGAGCTTTATACT
CATAATGAGTGTATTCGAGCCATAGTTCAACATTTGGACAAACAGGGATA
TAGAGTACGTATGGTGAAAGACAAATCACTGGTATTGTACGCTTGCTTGA
ACGAGAGTCCTAACAAAGGTTCTGTGTTGCCGGGGTACCTTTTTTGTAGT
TGACGCAGGTGAATATGGTTGATGCTCACTATTGCGCAGATGCATCCAAG
TTTATCGCCGTTATGCTTACTTCAGCCACGATGATGTTGCAGCTTGAGCT
TCCCGCTATCAACGTCTTGTCAAAGGTTGACCTTATAGAACAATACGGTA
CTCTCCGTGAGTTGTGTACAAGTACATACATCCGTGATGCGTGTCCTGTA
GCTGTCATTTTCTAACAATTTTCTCGTTCAATTTTTCCTCAATCAGCTCG
AAACCTGGACTTTTACACAGAAGGAAGCGACCTTGGAAAACTTCTGGATG
AGTTAGGACAGGACCCTGTCCTTAGAAAATATACTAAGCTCAACAAAGCA
ATCGTGGACGTTGTAGAGGACTTCCCATTTGTGGGATATCATACTTTAGA
CATTCAAAACAAAGAAAGCGTAATGAGATTAGTCAAAGCCATTGATAAGT
CGAATGGATATATGTACGCCAATCTGGACGCACAAAAAGTGACGTATGAC
GTGCTGGTCGGAAAACCGGAAATGGACCACAGATGGGTTGCCGAAGTTCA
GGAGCGCTATATGAAATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:569443..570611+

>Gchil10049.t1 ID=Gchil10049.t1|Name=Gchil10049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00004442_pilon:569443..570611+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGGCTTTGGGCAGGTAATTGTTGGCGCCCCAGGTTCAGGAAAGAC
GACGTATTGTGCTGGCCTCATGCAGTATTTCAAGGGAATAGGAAGAGATG
CGGTTGTTTTTAATATGGATCCTGCTAACGATACATTACCGTATGAAGCT
GCCGCGGACATCTCCGAACTCGTTAGCGTCGAAACTGTCGCTTCTGAGCT
TTCTCTTGGTCCGAATGGAAGCTTGTTATACGCAATGGAGTTTCTTGAAA
AAAATATGACGTGGCTGGACAAGAAGCTCGCGGAGAACAGAGGAAAATAT
GTTGTGTTCGACTTTCCTGGACAAATTGAGCTTTATACTCATAATGAGTG
TATTCGAGCCATAGTTCAACATTTGGACAAACAGGGATATAGATTGACGC
AGGTGAATATGGTTGATGCTCACTATTGCGCAGATGCATCCAAGTTTATC
GCCGTTATGCTTACTTCAGCCACGATGATGTTGCAGCTTGAGCTTCCCGC
TATCAACGTCTTGTCAAAGGTTGACCTTATAGAACAATACGGTACTCTCC
CTCGAAACCTGGACTTTTACACAGAAGGAAGCGACCTTGGAAAACTTCTG
GATGAGTTAGGACAGGACCCTGTCCTTAGAAAATATACTAAGCTCAACAA
AGCAATCGTGGACGTTGTAGAGGACTTCCCATTTGTGGGATATCATACTT
TAGACATTCAAAACAAAGAAAGCGTAATGAGATTAGTCAAAGCCATTGAT
AAGTCGAATGGATATATGTACGCCAATCTGGACGCACAAAAAGTGACGTA
TGACGTGCTGGTCGGAAAACCGGAAATGGACCACAGATGGGTTGCCGAAG
TTCAGGAGCGCTATATGAAATGA
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