Gchil10047.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10047.t1
Unique NameGchil10047.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:567004..567734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO183CT
PFAMsYbaB_DNA_bd
Max annot lvl2759|Eukaryota
Evalue1.8e-30
EggNOG OGsCOG0718@1|root,2S91Q@2759|Eukaryota
DescriptionYbaB/EbfC DNA-binding family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10047Gchil10047Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 567004..567734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10047.t1Gchil10047.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 567004..567734 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10047.t1.start1Gchil10047.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 567004..567006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10047.t1.CDS1Gchil10047.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 567004..567169 +
Gchil10047.t1.CDS2Gchil10047.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 567262..567458 +
Gchil10047.t1.CDS3Gchil10047.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 567534..567621 +
Gchil10047.t1.CDS4Gchil10047.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 567703..567734 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10047.t1.exon1Gchil10047.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 567004..567169 +
Gchil10047.t1.exon2Gchil10047.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 567262..567458 +
Gchil10047.t1.exon3Gchil10047.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 567534..567621 +
Gchil10047.t1.exon4Gchil10047.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 567703..567734 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10047.t1.intron1Gchil10047.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 567170..567261 +
Gchil10047.t1.intron2Gchil10047.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 567459..567533 +
Gchil10047.t1.intron3Gchil10047.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 567622..567702 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10047.t1.stop1Gchil10047.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 567732..567734 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10047.t1 ID=Gchil10047.t1|Name=Gchil10047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=161bp
MDTSRTGFIPSGVFTPRRLGAYPRAHNCSAFRTRLLPCRFNMMADKPKNP
LSGLGGLGNIMDAMKKAQEFTSVAKELQEQLKNTEIEASVRDGQVKVTMT
AQQVPVKVEVTDDLVALGSSEVSAAVTEGIIAAHSKATEYMREKMGSLSK
DFGIPQPPQK*
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spliced messenger RNA

>Gchil10047.t1 ID=Gchil10047.t1|Name=Gchil10047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00004442_pilon:567004..567734+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACATCTCGAACTGGCTTCATTCCCTCTGGGGTCTTCACTCCCAG
GCGGTTGGGGGCATATCCCAGAGCACATAACTGTAGTGCGTTCAGGACGC
GTCTTCTTCCATGTCGCTTCAATATGATGGCAGATAAGCCCAAGAACCCG
CTGAGCGGACTTGGTGGGTTAGGAAACATCATGGATGCGATGAAGAAGGC
GCAAGAATTTACCTCAGTCGCCAAAGAATTGCAGGAGCAATTGAAGAACA
CCGAGATTGAGGCTTCCGTGAGAGACGGACAGGTCAAGGTCACAATGACA
GCTCAACAAGTACCGGTGAAAGTGGAAGTGACCGATGACCTGGTGGCTTT
GGGTAGCTCAGAGGTATCGGCGGCAGTAACGGAAGGAATTATTGCGGCTC
ACTCGAAGGCCACAGAATACATGAGGGAAAAGATGGGGTCTTTGTCGAAA
GACTTCGGAATTCCACAGCCTCCTCAAAAGTGA
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protein sequence of Gchil10047.t1

>Gchil10047.t1 ID=Gchil10047.t1|Name=Gchil10047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=161bp
MDTSRTGFIPSGVFTPRRLGAYPRAHNCSAFRTRLLPCRFNMMADKPKNP
LSGLGGLGNIMDAMKKAQEFTSVAKELQEQLKNTEIEASVRDGQVKVTMT
AQQVPVKVEVTDDLVALGSSEVSAAVTEGIIAAHSKATEYMREKMGSLSK
DFGIPQPPQK*
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mRNA from alignment at tig00004442_pilon:567004..567734+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10047.t1 ID=Gchil10047.t1|Name=Gchil10047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=731bp|location=Sequence derived from alignment at tig00004442_pilon:567004..567734+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATACATCTCGAACTGGCTTCATTCCCTCTGGGGTCTTCACTCCCAG
GCGGTTGGGGGCATATCCCAGAGCACATAACTGTAGTGCGTTCAGGACGC
GTCTTCTTCCATGTCGCTTCAATATGATGGCAGATAAGCCCAAGAACCCG
CTGAGCGGACTTGGTGGTACGTAGAATTTTTGTCTTTTATGCATGATTTG
ACCTCACGGATATTTCCTGTCTGAAGCTAACGACGCATTCCTTCCCAACG
ATGTTTAGGGTTAGGAAACATCATGGATGCGATGAAGAAGGCGCAAGAAT
TTACCTCAGTCGCCAAAGAATTGCAGGAGCAATTGAAGAACACCGAGATT
GAGGCTTCCGTGAGAGACGGACAGGTCAAGGTCACAATGACAGCTCAACA
AGTACCGGTGAAAGTGGAAGTGACCGATGACCTGGTGGCTTTGGGTAGCT
CAGAGGTACGAAGCCTCAACCTGTACTCTGTTCAATTCACATTACTAACG
TAAGAGCTGCATGAATTCCCCAATGTTCAGGTATCGGCGGCAGTAACGGA
AGGAATTATTGCGGCTCACTCGAAGGCCACAGAATACATGAGGGAAAAGA
TGGGGTCTTTGTCGAAAGGTATGGCCACTATTCGAAAGCTTTTAGTTAAG
AAATGATCACACTCTGACTTGTCCGAATTTTTCCTCTTTTATTCCCTAGA
CTTCGGAATTCCACAGCCTCCTCAAAAGTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:567004..567734+

>Gchil10047.t1 ID=Gchil10047.t1|Name=Gchil10047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00004442_pilon:567004..567734+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATACATCTCGAACTGGCTTCATTCCCTCTGGGGTCTTCACTCCCAG
GCGGTTGGGGGCATATCCCAGAGCACATAACTGTAGTGCGTTCAGGACGC
GTCTTCTTCCATGTCGCTTCAATATGATGGCAGATAAGCCCAAGAACCCG
CTGAGCGGACTTGGTGGGTTAGGAAACATCATGGATGCGATGAAGAAGGC
GCAAGAATTTACCTCAGTCGCCAAAGAATTGCAGGAGCAATTGAAGAACA
CCGAGATTGAGGCTTCCGTGAGAGACGGACAGGTCAAGGTCACAATGACA
GCTCAACAAGTACCGGTGAAAGTGGAAGTGACCGATGACCTGGTGGCTTT
GGGTAGCTCAGAGGTATCGGCGGCAGTAACGGAAGGAATTATTGCGGCTC
ACTCGAAGGCCACAGAATACATGAGGGAAAAGATGGGGTCTTTGTCGAAA
GACTTCGGAATTCCACAGCCTCCTCAAAAGTGA
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