Gchil10045.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10045.t1
Unique NameGchil10045.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length458
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:558814..560270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10045Gchil10045Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 558814..560270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10045.t1Gchil10045.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 558814..560270 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10045.t1.start1Gchil10045.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 558814..558816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10045.t1.CDS1Gchil10045.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 558814..559165 +
Gchil10045.t1.CDS2Gchil10045.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 559249..560270 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10045.t1.exon1Gchil10045.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 558814..559165 +
Gchil10045.t1.exon2Gchil10045.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 559249..560270 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10045.t1.intron1Gchil10045.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 559166..559248 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10045.t1.stop1Gchil10045.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 560268..560270 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10045.t1 ID=Gchil10045.t1|Name=Gchil10045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=458bp
MSHRRQAAATAHESSDSNPLSSVVPSSFLHDLNANMTVVLNLTDSSHPLQ
STAVSPEAHLQMGPTLTPVQPNNGTNLPRSEPEPSSYSSSESRDLLEDDS
DITEETSYDSLVKQLQQTTPESFSRALQAVKAPDLSADSRSKLMSALENA
LRTLCIETDGASVLHSNVRIEAYTTLASFYASSTAPENEKVIYYCQLGLD
LASGRERLFPELVANLHALKARVLVSIGDYSRIPEAISHAKAAQVVLYAI
KDPKLQFQICVTLGDSYSLLIDSATCDNIRVACEWYSSAIQLSKMAALES
PIKVMWLSCRVAQLSLRYLRQKRNSDNANDNKHHEGKRDAEAAHMTIPSL
LNMLEQLHVDVERLRESELVEVSDQVLQLESVISEFTGKAYFEKTRTSST
KLQDLKKAASCMQKALRLCSWDSDPAGQRYAGIQEMIGDIRSHIHAAEVS
SSEVKRR*
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spliced messenger RNA

>Gchil10045.t1 ID=Gchil10045.t1|Name=Gchil10045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00004442_pilon:558814..560270+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCACAGACGCCAAGCTGCCGCCACTGCTCATGAAAGCTCCGATTC
CAACCCGCTGTCTAGTGTTGTTCCGTCCTCCTTTCTGCACGACCTGAATG
CCAACATGACTGTTGTGCTCAATCTCACTGATTCCTCGCATCCGCTGCAG
TCAACAGCCGTCTCCCCGGAGGCCCACCTTCAAATGGGTCCCACTCTCAC
ACCTGTGCAGCCCAACAACGGAACAAATCTCCCGCGTAGTGAACCAGAGC
CCTCATCCTACTCAAGCTCTGAATCCCGGGACCTACTTGAAGATGACAGC
GATATTACCGAAGAGACGTCATATGATTCTCTCGTCAAACAGTTGCAACA
GACTACGCCAGAATCATTCTCCCGCGCTCTGCAGGCCGTCAAGGCTCCAG
ACCTATCCGCTGACTCCCGAAGCAAACTCATGAGTGCTCTCGAAAACGCT
TTGCGAACTCTGTGCATCGAAACCGATGGGGCCTCAGTGCTGCACTCCAA
CGTTCGCATCGAGGCTTATACTACCTTGGCATCCTTTTATGCATCAAGCA
CTGCTCCAGAGAATGAGAAGGTTATTTACTATTGTCAATTGGGCCTGGAC
CTAGCTTCGGGCCGGGAACGCCTATTTCCCGAGCTAGTAGCCAACTTGCA
TGCGCTCAAGGCAAGAGTGCTTGTCAGCATTGGCGACTACAGCCGCATTC
CAGAGGCAATTTCTCATGCAAAGGCAGCACAAGTTGTCTTGTACGCCATC
AAGGATCCCAAGCTTCAGTTTCAGATATGTGTCACCCTTGGAGATTCTTA
CTCACTGCTCATCGACAGCGCAACCTGTGACAATATCCGCGTGGCGTGTG
AATGGTACTCCTCTGCCATTCAGCTTTCGAAAATGGCCGCTCTGGAATCG
CCGATAAAAGTTATGTGGCTCTCGTGCAGAGTAGCGCAGCTGTCATTACG
GTATCTCAGACAAAAACGAAACAGTGATAATGCTAATGATAATAAGCATC
ATGAAGGAAAAAGGGACGCCGAGGCAGCTCACATGACAATACCTAGCCTT
CTGAACATGCTTGAGCAATTGCATGTAGATGTAGAAAGGCTTCGCGAAAG
CGAACTTGTTGAGGTCTCGGACCAAGTGCTGCAACTTGAATCAGTGATTT
CTGAATTTACAGGCAAGGCTTACTTTGAAAAGACAAGGACGTCGAGTACT
AAGTTGCAGGACCTAAAGAAGGCAGCATCATGCATGCAGAAGGCGCTCAG
GCTATGTTCATGGGACTCTGATCCAGCCGGTCAGCGTTACGCTGGGATTC
AAGAAATGATTGGTGATATCAGGTCACATATCCATGCTGCTGAAGTCAGC
TCAAGTGAAGTCAAGCGACGGTGA
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protein sequence of Gchil10045.t1

>Gchil10045.t1 ID=Gchil10045.t1|Name=Gchil10045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=458bp
MSHRRQAAATAHESSDSNPLSSVVPSSFLHDLNANMTVVLNLTDSSHPLQ
STAVSPEAHLQMGPTLTPVQPNNGTNLPRSEPEPSSYSSSESRDLLEDDS
DITEETSYDSLVKQLQQTTPESFSRALQAVKAPDLSADSRSKLMSALENA
LRTLCIETDGASVLHSNVRIEAYTTLASFYASSTAPENEKVIYYCQLGLD
LASGRERLFPELVANLHALKARVLVSIGDYSRIPEAISHAKAAQVVLYAI
KDPKLQFQICVTLGDSYSLLIDSATCDNIRVACEWYSSAIQLSKMAALES
PIKVMWLSCRVAQLSLRYLRQKRNSDNANDNKHHEGKRDAEAAHMTIPSL
LNMLEQLHVDVERLRESELVEVSDQVLQLESVISEFTGKAYFEKTRTSST
KLQDLKKAASCMQKALRLCSWDSDPAGQRYAGIQEMIGDIRSHIHAAEVS
SSEVKRR*
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mRNA from alignment at tig00004442_pilon:558814..560270+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10045.t1 ID=Gchil10045.t1|Name=Gchil10045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1457bp|location=Sequence derived from alignment at tig00004442_pilon:558814..560270+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCACAGACGCCAAGCTGCCGCCACTGCTCATGAAAGCTCCGATTC
CAACCCGCTGTCTAGTGTTGTTCCGTCCTCCTTTCTGCACGACCTGAATG
CCAACATGACTGTTGTGCTCAATCTCACTGATTCCTCGCATCCGCTGCAG
TCAACAGCCGTCTCCCCGGAGGCCCACCTTCAAATGGGTCCCACTCTCAC
ACCTGTGCAGCCCAACAACGGAACAAATCTCCCGCGTAGTGAACCAGAGC
CCTCATCCTACTCAAGCTCTGAATCCCGGGACCTACTTGAAGATGACAGC
GATATTACCGAAGAGACGTCATATGATTCTCTCGTCAAACAGTTGCAACA
GAGTAAGTTGGTTCTCTCCCCTTGTTGCGCATTCCGCTGTTCAAGTTTTT
TTCGAAACAAGCACCTTCGTCTAACATCACAATAGCTACGCCAGAATCAT
TCTCCCGCGCTCTGCAGGCCGTCAAGGCTCCAGACCTATCCGCTGACTCC
CGAAGCAAACTCATGAGTGCTCTCGAAAACGCTTTGCGAACTCTGTGCAT
CGAAACCGATGGGGCCTCAGTGCTGCACTCCAACGTTCGCATCGAGGCTT
ATACTACCTTGGCATCCTTTTATGCATCAAGCACTGCTCCAGAGAATGAG
AAGGTTATTTACTATTGTCAATTGGGCCTGGACCTAGCTTCGGGCCGGGA
ACGCCTATTTCCCGAGCTAGTAGCCAACTTGCATGCGCTCAAGGCAAGAG
TGCTTGTCAGCATTGGCGACTACAGCCGCATTCCAGAGGCAATTTCTCAT
GCAAAGGCAGCACAAGTTGTCTTGTACGCCATCAAGGATCCCAAGCTTCA
GTTTCAGATATGTGTCACCCTTGGAGATTCTTACTCACTGCTCATCGACA
GCGCAACCTGTGACAATATCCGCGTGGCGTGTGAATGGTACTCCTCTGCC
ATTCAGCTTTCGAAAATGGCCGCTCTGGAATCGCCGATAAAAGTTATGTG
GCTCTCGTGCAGAGTAGCGCAGCTGTCATTACGGTATCTCAGACAAAAAC
GAAACAGTGATAATGCTAATGATAATAAGCATCATGAAGGAAAAAGGGAC
GCCGAGGCAGCTCACATGACAATACCTAGCCTTCTGAACATGCTTGAGCA
ATTGCATGTAGATGTAGAAAGGCTTCGCGAAAGCGAACTTGTTGAGGTCT
CGGACCAAGTGCTGCAACTTGAATCAGTGATTTCTGAATTTACAGGCAAG
GCTTACTTTGAAAAGACAAGGACGTCGAGTACTAAGTTGCAGGACCTAAA
GAAGGCAGCATCATGCATGCAGAAGGCGCTCAGGCTATGTTCATGGGACT
CTGATCCAGCCGGTCAGCGTTACGCTGGGATTCAAGAAATGATTGGTGAT
ATCAGGTCACATATCCATGCTGCTGAAGTCAGCTCAAGTGAAGTCAAGCG
ACGGTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:558814..560270+

>Gchil10045.t1 ID=Gchil10045.t1|Name=Gchil10045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1374bp|location=Sequence derived from alignment at tig00004442_pilon:558814..560270+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCACAGACGCCAAGCTGCCGCCACTGCTCATGAAAGCTCCGATTC
CAACCCGCTGTCTAGTGTTGTTCCGTCCTCCTTTCTGCACGACCTGAATG
CCAACATGACTGTTGTGCTCAATCTCACTGATTCCTCGCATCCGCTGCAG
TCAACAGCCGTCTCCCCGGAGGCCCACCTTCAAATGGGTCCCACTCTCAC
ACCTGTGCAGCCCAACAACGGAACAAATCTCCCGCGTAGTGAACCAGAGC
CCTCATCCTACTCAAGCTCTGAATCCCGGGACCTACTTGAAGATGACAGC
GATATTACCGAAGAGACGTCATATGATTCTCTCGTCAAACAGTTGCAACA
GACTACGCCAGAATCATTCTCCCGCGCTCTGCAGGCCGTCAAGGCTCCAG
ACCTATCCGCTGACTCCCGAAGCAAACTCATGAGTGCTCTCGAAAACGCT
TTGCGAACTCTGTGCATCGAAACCGATGGGGCCTCAGTGCTGCACTCCAA
CGTTCGCATCGAGGCTTATACTACCTTGGCATCCTTTTATGCATCAAGCA
CTGCTCCAGAGAATGAGAAGGTTATTTACTATTGTCAATTGGGCCTGGAC
CTAGCTTCGGGCCGGGAACGCCTATTTCCCGAGCTAGTAGCCAACTTGCA
TGCGCTCAAGGCAAGAGTGCTTGTCAGCATTGGCGACTACAGCCGCATTC
CAGAGGCAATTTCTCATGCAAAGGCAGCACAAGTTGTCTTGTACGCCATC
AAGGATCCCAAGCTTCAGTTTCAGATATGTGTCACCCTTGGAGATTCTTA
CTCACTGCTCATCGACAGCGCAACCTGTGACAATATCCGCGTGGCGTGTG
AATGGTACTCCTCTGCCATTCAGCTTTCGAAAATGGCCGCTCTGGAATCG
CCGATAAAAGTTATGTGGCTCTCGTGCAGAGTAGCGCAGCTGTCATTACG
GTATCTCAGACAAAAACGAAACAGTGATAATGCTAATGATAATAAGCATC
ATGAAGGAAAAAGGGACGCCGAGGCAGCTCACATGACAATACCTAGCCTT
CTGAACATGCTTGAGCAATTGCATGTAGATGTAGAAAGGCTTCGCGAAAG
CGAACTTGTTGAGGTCTCGGACCAAGTGCTGCAACTTGAATCAGTGATTT
CTGAATTTACAGGCAAGGCTTACTTTGAAAAGACAAGGACGTCGAGTACT
AAGTTGCAGGACCTAAAGAAGGCAGCATCATGCATGCAGAAGGCGCTCAG
GCTATGTTCATGGGACTCTGATCCAGCCGGTCAGCGTTACGCTGGGATTC
AAGAAATGATTGGTGATATCAGGTCACATATCCATGCTGCTGAAGTCAGC
TCAAGTGAAGTCAAGCGACGGTGA
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