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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 130081.XP_005703214.1 |
Preferred name | NCBP2 |
PFAMs | RRM_1 |
Max annot lvl | 2759|Eukaryota |
KEGG ko | ko:K12883 |
KEGG Pathway | ko03013,ko03015,ko03040,map03013,map03015,map03040 |
KEGG Module | M00399 |
GOs | GO:0000184,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0030422,GO:0031047,GO:0031050,GO:0031053,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034470,GO:0034518,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043900,GO:0043901,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045071,GO:0045184,GO:0045292,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048525,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071363,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1903311,GO:1903313,GO:1903900,GO:1903901,GO:1990904,GO:2000112 |
Evalue | 5.25e-66 |
EggNOG OGs | KOG0121@1|root,KOG0121@2759|Eukaryota |
Description | RNA cap binding |
COG category | J |
BRITE | ko00000,ko00001,ko00002,ko03019,ko03041 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10044.t1 ID=Gchil10044.t1|Name=Gchil10044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=319bp MATKLFRSEIAKPISLYQDRRFQGGQKQREVALKQSSTLYVGNLSFYTTE EQIFDIFSKAGEIRRIIMGLDRIRKTPCGFCFVEYYRRCDAENSVNFLSG TKLDERNIRVDYDVGFSDGRQYGRGRSGGQVRDEHRVDYDPGRGGFGRAR EVQTGMTGMQMWSNAAAPAQPFMSPAPGGRGRSYGERGRRMGRGRRGGRG RGRPFHGPSGQPPARYFGGMGQGPMKRRRESDDFNSQDNNFEPRYKRFRG QDYAPHPPPPPPMMGMPPPPGMINPPMPPPVPGASMAPMDAMDMGPVGPR EGEPMRNERFDRGRKDDE* back to topspliced messenger RNA >Gchil10044.t1 ID=Gchil10044.t1|Name=Gchil10044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00004442_pilon:552068..553152- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGACTAAGCTTTTCAGATCCGAAATCGCGAAACCGATCAGTCTTTA CCAAGATAGACGCTTTCAAGGCGGACAGAAACAACGAGAAGTCGCGCTCA AGCAAAGCTCAACCCTCTATGTTGGAAACCTTTCGTTTTATACGACGGAG GAGCAAATATTCGATATTTTCTCCAAAGCTGGGGAGATACGACGTATTAT CATGGGGTTAGACAGAATCAGAAAAACTCCTTGCGGGTTCTGCTTTGTGG AGTACTACAGAAGATGTGATGCAGAAAACAGTGTTAATTTTCTCTCTGGA ACCAAGTTAGACGAAAGAAATATTCGAGTCGACTACGACGTTGGTTTCTC CGATGGGAGACAGTATGGTCGTGGACGGTCTGGCGGGCAAGTGCGCGATG AGCACAGGGTTGACTATGATCCTGGAAGAGGAGGTTTTGGTAGGGCAAGA GAAGTCCAAACAGGAATGACAGGCATGCAGATGTGGAGCAATGCTGCAGC ACCTGCGCAGCCGTTCATGAGTCCTGCACCTGGAGGACGGGGTCGCTCTT ATGGAGAGAGAGGACGAAGAATGGGAAGAGGACGACGGGGGGGAAGAGGC CGAGGTCGACCATTCCATGGTCCATCTGGACAGCCACCGGCTCGCTATTT TGGTGGTATGGGTCAAGGACCCATGAAGAGAAGGCGTGAATCTGACGACT TCAATTCCCAAGATAATAATTTCGAGCCACGGTACAAGAGATTCCGGGGT CAAGACTATGCACCGCATCCCCCCCCCCCTCCTCCTATGATGGGCATGCC ACCGCCCCCGGGAATGATAAATCCTCCTATGCCACCTCCAGTACCTGGTG CATCAATGGCACCCATGGATGCCATGGATATGGGACCCGTTGGGCCAAGA GAGGGTGAACCTATGCGGAACGAACGGTTCGACCGAGGGAGGAAAGATGA CGAGTAG back to topprotein sequence of Gchil10044.t1 >Gchil10044.t1 ID=Gchil10044.t1|Name=Gchil10044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=319bp
MATKLFRSEIAKPISLYQDRRFQGGQKQREVALKQSSTLYVGNLSFYTTE EQIFDIFSKAGEIRRIIMGLDRIRKTPCGFCFVEYYRRCDAENSVNFLSG TKLDERNIRVDYDVGFSDGRQYGRGRSGGQVRDEHRVDYDPGRGGFGRAR EVQTGMTGMQMWSNAAAPAQPFMSPAPGGRGRSYGERGRRMGRGRRGGRG RGRPFHGPSGQPPARYFGGMGQGPMKRRRESDDFNSQDNNFEPRYKRFRG QDYAPHPPPPPPMMGMPPPPGMINPPMPPPVPGASMAPMDAMDMGPVGPR EGEPMRNERFDRGRKDDE* back to topmRNA from alignment at tig00004442_pilon:552068..553152- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10044.t1 ID=Gchil10044.t1|Name=Gchil10044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1085bp|location=Sequence derived from alignment at tig00004442_pilon:552068..553152- (Gracilaria chilensis NLEC103_M9 male) ATGGCGACTAAGCTTTTCAGATCCGAAATCGCGAAACCGATCAGTCTTTA
CCAAGATAGACGCTTTCAAGGCGGACAGGTAAGTTTGGCTTTTGAGTTTT
CGCTGCCTTTTCGTGTTTTTAAGTATGTCGTTTCTGACAAAAATCCCCTC
AACTCAATGGAACGATGGCGATTTTTCGATATTCTCATTGCACTTGATGT
TGGTAGAAACAACGAGAAGTCGCGCTCAAGCAAAGCTCAACCCTCTATGT
TGGAAACCTTTCGTTTTATACGACGGAGGAGCAAATATTCGATATTTTCT
CCAAAGCTGGGGAGATACGACGTATTATCATGGGGTTAGACAGAATCAGA
AAAACTCCTTGCGGGTTCTGCTTTGTGGAGTACTACAGAAGATGTGATGC
AGAAAACAGTGTTAATTTTCTCTCTGGAACCAAGTTAGACGAAAGAAATA
TTCGAGTCGACTACGACGTTGGTTTCTCCGATGGGAGACAGTATGGTCGT
GGACGGTCTGGCGGGCAAGTGCGCGATGAGCACAGGGTTGACTATGATCC
TGGAAGAGGAGGTTTTGGTAGGGCAAGAGAAGTCCAAACAGGAATGACAG
GCATGCAGATGTGGAGCAATGCTGCAGCACCTGCGCAGCCGTTCATGAGT
CCTGCACCTGGAGGACGGGGTCGCTCTTATGGAGAGAGAGGACGAAGAAT
GGGAAGAGGACGACGGGGGGGAAGAGGCCGAGGTCGACCATTCCATGGTC
CATCTGGACAGCCACCGGCTCGCTATTTTGGTGGTATGGGTCAAGGACCC
ATGAAGAGAAGGCGTGAATCTGACGACTTCAATTCCCAAGATAATAATTT
CGAGCCACGGTACAAGAGATTCCGGGGTCAAGACTATGCACCGCATCCCC
CCCCCCCTCCTCCTATGATGGGCATGCCACCGCCCCCGGGAATGATAAAT
CCTCCTATGCCACCTCCAGTACCTGGTGCATCAATGGCACCCATGGATGC
CATGGATATGGGACCCGTTGGGCCAAGAGAGGGTGAACCTATGCGGAACG
AACGGTTCGACCGAGGGAGGAAAGATGACGAGTAG back to topCoding sequence (CDS) from alignment at tig00004442_pilon:552068..553152- >Gchil10044.t1 ID=Gchil10044.t1|Name=Gchil10044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00004442_pilon:552068..553152- (Gracilaria chilensis NLEC103_M9 male) ATGGCGACTAAGCTTTTCAGATCCGAAATCGCGAAACCGATCAGTCTTTA CCAAGATAGACGCTTTCAAGGCGGACAGAAACAACGAGAAGTCGCGCTCA AGCAAAGCTCAACCCTCTATGTTGGAAACCTTTCGTTTTATACGACGGAG GAGCAAATATTCGATATTTTCTCCAAAGCTGGGGAGATACGACGTATTAT CATGGGGTTAGACAGAATCAGAAAAACTCCTTGCGGGTTCTGCTTTGTGG AGTACTACAGAAGATGTGATGCAGAAAACAGTGTTAATTTTCTCTCTGGA ACCAAGTTAGACGAAAGAAATATTCGAGTCGACTACGACGTTGGTTTCTC CGATGGGAGACAGTATGGTCGTGGACGGTCTGGCGGGCAAGTGCGCGATG AGCACAGGGTTGACTATGATCCTGGAAGAGGAGGTTTTGGTAGGGCAAGA GAAGTCCAAACAGGAATGACAGGCATGCAGATGTGGAGCAATGCTGCAGC ACCTGCGCAGCCGTTCATGAGTCCTGCACCTGGAGGACGGGGTCGCTCTT ATGGAGAGAGAGGACGAAGAATGGGAAGAGGACGACGGGGGGGAAGAGGC CGAGGTCGACCATTCCATGGTCCATCTGGACAGCCACCGGCTCGCTATTT TGGTGGTATGGGTCAAGGACCCATGAAGAGAAGGCGTGAATCTGACGACT TCAATTCCCAAGATAATAATTTCGAGCCACGGTACAAGAGATTCCGGGGT CAAGACTATGCACCGCATCCCCCCCCCCCTCCTCCTATGATGGGCATGCC ACCGCCCCCGGGAATGATAAATCCTCCTATGCCACCTCCAGTACCTGGTG CATCAATGGCACCCATGGATGCCATGGATATGGGACCCGTTGGGCCAAGA GAGGGTGAACCTATGCGGAACGAACGGTTCGACCGAGGGAGGAAAGATGA CGAGTAG back to top
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