Gchil10041.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10041.t1
Unique Name	Gchil10041.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:547698..548669 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_019210-tr
Preferred name	NGDN
PFAMs	Sas10_Utp3
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14765
GOs	GO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue	2.8e-17
EggNOG OGs	KOG3117@1\|root,KOG3117@2759\|Eukaryota,38GU4@33154\|Opisthokonta,3BHWF@33208\|Metazoa,3CXS4@33213\|Bilateria
Description	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG category	A
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10041	Gchil10041	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 547698..548669 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10041.t1.start1	Gchil10041.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 547698..547700 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10041.t1.CDS1	Gchil10041.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 547698..548669 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10041.t1.exon1	Gchil10041.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 547698..548669 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10041.t1.stop1	Gchil10041.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 548667..548669 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10041.t1	Gchil10041.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 547698..548669 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:547698..548669+
coding sequence from alignment at tig00004442_pilon:547698..548669+

mRNA sequence

>Gchil10041.t1 ID=Gchil10041.t1|Name=Gchil10041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=324bp
MEISDAIERLQELASDAKDHVNRVKSAAEDTSSLESGISLLRAKSATLMH
YNACIIQFTLSRLLGKPVQSIVDQLVEDWVILTKIAPLEKKLRYQIDTLL
KTATRDAANDGDRHRPDPDAVVLDDDEQPESSDEERPYRPPRFSEVVYDG
DNENRKEFIQKRKEKHQARAIRSSEVQEMLATIRGRPEELFENEHLHTSS
AKRVLREQKKRERFEEDNFVRLTQSKKTKKRARREMDEATAGAQGGGNGF
SGLAELADQVVRTTKGNSDGNGHARVSKRSQEYELEQEEEIQKERQLDQF
VEDGERQNRRSSGARSAHKKRRR*

spliced messenger RNA

>Gchil10041.t1 ID=Gchil10041.t1|Name=Gchil10041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00004442_pilon:547698..548669+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATCTCGGACGCTATAGAAAGGCTTCAGGAGCTGGCTAGTGACGC
GAAAGATCATGTAAACAGAGTGAAATCAGCCGCAGAGGACACTAGCAGTT
TGGAGAGTGGTATCTCACTTCTGCGCGCTAAATCAGCAACTCTCATGCAC
TACAATGCTTGCATAATTCAGTTTACACTCTCACGTCTACTCGGAAAACC
TGTCCAATCCATCGTGGACCAATTGGTAGAAGACTGGGTAATTCTTACCA
AGATTGCACCTCTTGAAAAGAAGCTACGGTATCAGATCGACACGCTACTG
AAGACTGCGACCCGAGACGCTGCCAATGATGGAGACAGACATCGACCTGA
TCCCGACGCTGTTGTCCTGGATGACGATGAGCAACCCGAATCCAGTGACG
AAGAGCGGCCATATAGACCTCCTCGCTTCTCAGAGGTTGTATACGACGGT
GATAACGAAAACCGAAAGGAATTTATTCAGAAACGAAAGGAAAAACATCA
GGCCCGCGCGATTCGAAGTTCAGAAGTGCAAGAAATGTTAGCAACTATCC
GAGGACGCCCTGAAGAGCTATTCGAAAACGAACACTTGCACACTTCTTCT
GCGAAACGAGTGTTGAGAGAGCAGAAAAAACGCGAACGATTTGAGGAAGA
TAACTTTGTCAGATTGACACAATCGAAGAAAACTAAAAAGCGAGCTCGTC
GCGAGATGGATGAAGCTACGGCTGGAGCCCAGGGTGGAGGGAATGGCTTT
TCTGGTTTGGCAGAACTGGCGGACCAGGTGGTCCGGACAACCAAGGGAAA
TAGCGATGGGAATGGCCATGCAAGAGTGTCGAAGCGGAGTCAAGAGTACG
AACTTGAACAAGAGGAGGAAATTCAAAAAGAAAGGCAACTAGATCAATTT
GTAGAAGATGGAGAAAGACAGAACAGGCGTTCTTCTGGTGCTCGTTCTGC
TCACAAGAAACGCAGAAGGTAG

protein sequence of Gchil10041.t1

>Gchil10041.t1 ID=Gchil10041.t1|Name=Gchil10041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=324bp
MEISDAIERLQELASDAKDHVNRVKSAAEDTSSLESGISLLRAKSATLMH
YNACIIQFTLSRLLGKPVQSIVDQLVEDWVILTKIAPLEKKLRYQIDTLL
KTATRDAANDGDRHRPDPDAVVLDDDEQPESSDEERPYRPPRFSEVVYDG
DNENRKEFIQKRKEKHQARAIRSSEVQEMLATIRGRPEELFENEHLHTSS
AKRVLREQKKRERFEEDNFVRLTQSKKTKKRARREMDEATAGAQGGGNGF
SGLAELADQVVRTTKGNSDGNGHARVSKRSQEYELEQEEEIQKERQLDQF
VEDGERQNRRSSGARSAHKKRRR*

mRNA from alignment at tig00004442_pilon:547698..548669+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10041.t1 ID=Gchil10041.t1|Name=Gchil10041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00004442_pilon:547698..548669+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATCTCGGACGCTATAGAAAGGCTTCAGGAGCTGGCTAGTGACGC
GAAAGATCATGTAAACAGAGTGAAATCAGCCGCAGAGGACACTAGCAGTT
TGGAGAGTGGTATCTCACTTCTGCGCGCTAAATCAGCAACTCTCATGCAC
TACAATGCTTGCATAATTCAGTTTACACTCTCACGTCTACTCGGAAAACC
TGTCCAATCCATCGTGGACCAATTGGTAGAAGACTGGGTAATTCTTACCA
AGATTGCACCTCTTGAAAAGAAGCTACGGTATCAGATCGACACGCTACTG
AAGACTGCGACCCGAGACGCTGCCAATGATGGAGACAGACATCGACCTGA
TCCCGACGCTGTTGTCCTGGATGACGATGAGCAACCCGAATCCAGTGACG
AAGAGCGGCCATATAGACCTCCTCGCTTCTCAGAGGTTGTATACGACGGT
GATAACGAAAACCGAAAGGAATTTATTCAGAAACGAAAGGAAAAACATCA
GGCCCGCGCGATTCGAAGTTCAGAAGTGCAAGAAATGTTAGCAACTATCC
GAGGACGCCCTGAAGAGCTATTCGAAAACGAACACTTGCACACTTCTTCT
GCGAAACGAGTGTTGAGAGAGCAGAAAAAACGCGAACGATTTGAGGAAGA
TAACTTTGTCAGATTGACACAATCGAAGAAAACTAAAAAGCGAGCTCGTC
GCGAGATGGATGAAGCTACGGCTGGAGCCCAGGGTGGAGGGAATGGCTTT
TCTGGTTTGGCAGAACTGGCGGACCAGGTGGTCCGGACAACCAAGGGAAA
TAGCGATGGGAATGGCCATGCAAGAGTGTCGAAGCGGAGTCAAGAGTACG
AACTTGAACAAGAGGAGGAAATTCAAAAAGAAAGGCAACTAGATCAATTT
GTAGAAGATGGAGAAAGACAGAACAGGCGTTCTTCTGGTGCTCGTTCTGC
TCACAAGAAACGCAGAAGGTAG

Coding sequence (CDS) from alignment at tig00004442_pilon:547698..548669+

>Gchil10041.t1 ID=Gchil10041.t1|Name=Gchil10041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00004442_pilon:547698..548669+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATCTCGGACGCTATAGAAAGGCTTCAGGAGCTGGCTAGTGACGC
GAAAGATCATGTAAACAGAGTGAAATCAGCCGCAGAGGACACTAGCAGTT
TGGAGAGTGGTATCTCACTTCTGCGCGCTAAATCAGCAACTCTCATGCAC
TACAATGCTTGCATAATTCAGTTTACACTCTCACGTCTACTCGGAAAACC
TGTCCAATCCATCGTGGACCAATTGGTAGAAGACTGGGTAATTCTTACCA
AGATTGCACCTCTTGAAAAGAAGCTACGGTATCAGATCGACACGCTACTG
AAGACTGCGACCCGAGACGCTGCCAATGATGGAGACAGACATCGACCTGA
TCCCGACGCTGTTGTCCTGGATGACGATGAGCAACCCGAATCCAGTGACG
AAGAGCGGCCATATAGACCTCCTCGCTTCTCAGAGGTTGTATACGACGGT
GATAACGAAAACCGAAAGGAATTTATTCAGAAACGAAAGGAAAAACATCA
GGCCCGCGCGATTCGAAGTTCAGAAGTGCAAGAAATGTTAGCAACTATCC
GAGGACGCCCTGAAGAGCTATTCGAAAACGAACACTTGCACACTTCTTCT
GCGAAACGAGTGTTGAGAGAGCAGAAAAAACGCGAACGATTTGAGGAAGA
TAACTTTGTCAGATTGACACAATCGAAGAAAACTAAAAAGCGAGCTCGTC
GCGAGATGGATGAAGCTACGGCTGGAGCCCAGGGTGGAGGGAATGGCTTT
TCTGGTTTGGCAGAACTGGCGGACCAGGTGGTCCGGACAACCAAGGGAAA
TAGCGATGGGAATGGCCATGCAAGAGTGTCGAAGCGGAGTCAAGAGTACG
AACTTGAACAAGAGGAGGAAATTCAAAAAGAAAGGCAACTAGATCAATTT
GTAGAAGATGGAGAAAGACAGAACAGGCGTTCTTCTGGTGCTCGTTCTGC
TCACAAGAAACGCAGAAGGTAG