Gchil10039.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10039.t1
Unique Name	Gchil10039.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	710

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:510152..512281 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	31033.ENSTRUP00000034421
Preferred name	SDAD1
PFAMs	NUC130_3NT,SDA1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14856
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006996,GO:0007010,GO:0008150,GO:0009987,GO:0010033,GO:0016043,GO:0022613,GO:0030029,GO:0030036,GO:0031974,GO:0031981,GO:0034097,GO:0042221,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071840,GO:1990823,GO:1990830
Evalue	1.15e-102
EggNOG OGs	KOG2229@1\|root,KOG2229@2759\|Eukaryota,38BYQ@33154\|Opisthokonta,3B9QQ@33208\|Metazoa,3CZ14@33213\|Bilateria,4808G@7711\|Chordata,48XZ0@7742\|Vertebrata,49QNW@7898\|Actinopterygii
Description	SDA1 domain containing 1
COG category	DZ
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10039	Gchil10039	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 510152..512281 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10039.t1.stop1	Gchil10039.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 510152..510154 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10039.t1.CDS1	Gchil10039.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 510152..512281 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10039.t1.exon1	Gchil10039.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 510152..512281 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10039.t1.start1	Gchil10039.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 512279..512281 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10039.t1	Gchil10039.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 510152..512281 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:510152..512281-
coding sequence from alignment at tig00004442_pilon:510152..512281-

mRNA sequence

>Gchil10039.t1 ID=Gchil10039.t1|Name=Gchil10039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=710bp
MLLQQRCRKDPLSYKDDFLSQRRHFDALLSAANLHPSDHNPRLAEVASFM
SAVAHCYGSEGNSIATEITTFLGQYGQAMNPNLRRSLVRLLCLLRARGTA
DPTTVIPLFFRLLSCNDKVLRRMVHGHIVSDIKKIQSSGHSSRKQLQTFL
FSMVQDPSQVLVKRSLHVLVDLFRKRIWNDAKCANMIATACFHQSMSVSI
IASRFMLNSENKEQSQDSDDDSDNESPEMSRTTRDGQKASDMWKVYNMTG
KKSSKKKKKMERIINRATRVKTSVSSRAISEKNPGHPQLEALMLINDPQE
FAERLFKDLQTRRKKESYENRLIFINLISRLVGTHELILFNFYPFLQRYL
QPAQPEVTRVLAYLTQACHEKVPADVLHPILRGLADTFVSERSSPPSVAA
GLNAIRAICSRVPLAILDEENEYKPEHEQEAALLEDLVQYKTSKDKGIMM
AARSLIALYREIHPGLLQKKDRGRAGAQAVQKGESAHARAYGEHLYATGV
EGIELLNANDSECDAQVEIDAPSDTDADARRGEEETPVNEVVGVGDEVDA
QVEDDIGDEANDTSEDDNISEDKVERTQGDNECENDRRLDTMQILSNEDF
EKIRVRRAAKALGESVRELNTGRAVDPDEIQGPMKRERLTHAERMESIMK
GREGRSKFGRKNDSGGGTSNKQKLKKKSNAMVIHKRRRKNKQLSRRDKQV
AKRRKKDYR*

spliced messenger RNA

>Gchil10039.t1 ID=Gchil10039.t1|Name=Gchil10039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00004442_pilon:510152..512281- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTGCAACAAAGGTGTCGGAAGGACCCGCTTTCGTATAAAGATGA
TTTTCTTTCGCAGCGTCGACATTTCGACGCCCTTCTATCCGCCGCCAATT
TACACCCTTCCGATCACAATCCCCGTCTGGCAGAGGTCGCGTCCTTCATG
AGCGCTGTGGCGCATTGTTACGGTTCAGAGGGAAACAGCATCGCAACCGA
GATAACTACCTTTCTGGGGCAGTACGGCCAGGCCATGAACCCAAACTTGC
GTCGTTCACTTGTTCGACTGCTCTGTCTCCTGCGAGCAAGGGGCACAGCG
GATCCCACAACAGTAATTCCACTGTTTTTCCGTCTTTTATCATGTAATGA
TAAGGTATTACGAAGAATGGTGCACGGGCACATCGTATCCGATATCAAGA
AGATCCAAAGCAGTGGCCATTCAAGTCGGAAGCAATTGCAGACTTTTTTG
TTTTCTATGGTGCAGGACCCCAGCCAAGTTTTGGTCAAGCGCAGCCTACA
CGTGCTAGTCGATTTGTTTCGAAAGCGAATATGGAATGACGCCAAATGCG
CTAACATGATTGCGACCGCTTGTTTTCATCAATCCATGTCTGTCTCCATT
ATTGCTTCGCGCTTCATGCTCAACTCAGAGAACAAGGAGCAAAGTCAAGA
TTCTGATGATGATTCAGATAATGAAAGTCCGGAGATGTCGCGGACAACAC
GAGATGGCCAAAAGGCATCTGACATGTGGAAAGTGTACAACATGACTGGG
AAAAAGTCCTCAAAGAAGAAGAAGAAAATGGAGAGAATCATTAACAGGGC
CACTAGAGTAAAGACTTCTGTTTCATCAAGAGCAATATCCGAAAAGAATC
CCGGTCACCCGCAATTGGAAGCATTGATGCTTATTAACGACCCACAGGAG
TTTGCTGAACGACTTTTCAAAGACCTTCAAACTCGAAGAAAGAAAGAGAG
CTATGAAAACCGGCTTATCTTTATTAACCTAATCTCTCGACTTGTGGGCA
CCCATGAACTTATTTTATTTAACTTTTACCCATTTCTGCAGAGATACTTG
CAACCGGCTCAACCAGAAGTGACACGGGTTTTGGCATATCTAACGCAGGC
ATGCCATGAGAAGGTTCCTGCCGATGTATTGCATCCTATTTTAAGAGGTC
TAGCAGATACATTTGTGTCTGAAAGGAGTTCCCCTCCATCTGTGGCCGCG
GGCTTGAATGCGATTAGAGCTATCTGTTCTCGTGTTCCACTAGCCATATT
GGACGAAGAGAATGAGTACAAACCCGAACATGAACAGGAAGCGGCATTGT
TGGAAGACTTGGTACAGTACAAGACTAGCAAAGATAAAGGAATCATGATG
GCGGCTCGGTCTTTGATTGCTCTGTACAGAGAGATACACCCTGGTCTATT
GCAAAAGAAGGACAGGGGACGGGCTGGGGCTCAGGCCGTACAGAAAGGAG
AATCGGCGCATGCCAGGGCGTACGGGGAACATTTGTATGCTACAGGTGTG
GAGGGAATTGAACTCCTAAACGCCAACGATTCAGAATGCGACGCACAAGT
CGAGATTGATGCGCCAAGCGATACCGATGCAGACGCCAGACGCGGCGAAG
AGGAAACGCCAGTGAACGAAGTTGTTGGAGTTGGTGATGAAGTAGATGCG
CAGGTAGAAGATGATATAGGTGACGAAGCTAATGATACCAGCGAGGATGA
CAACATCAGTGAGGATAAAGTTGAAAGGACGCAAGGTGATAATGAATGTG
AAAACGATAGACGACTAGATACGATGCAAATCCTATCAAATGAGGACTTC
GAAAAGATCCGAGTCCGACGAGCTGCCAAGGCGCTGGGTGAAAGCGTGAG
AGAGCTGAACACGGGGAGAGCGGTTGATCCTGATGAAATTCAAGGACCGA
TGAAACGCGAGCGATTGACGCATGCGGAACGCATGGAGAGCATCATGAAA
GGAAGAGAAGGGCGAAGCAAATTCGGAAGAAAGAATGACAGTGGCGGTGG
CACGAGCAACAAACAGAAATTGAAGAAGAAGTCGAATGCAATGGTGATAC
ACAAGCGAAGAAGAAAAAACAAGCAACTGTCTCGAAGAGACAAGCAAGTT
GCAAAACGAAGGAAGAAGGACTACAGATGA

protein sequence of Gchil10039.t1

>Gchil10039.t1 ID=Gchil10039.t1|Name=Gchil10039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=710bp
MLLQQRCRKDPLSYKDDFLSQRRHFDALLSAANLHPSDHNPRLAEVASFM
SAVAHCYGSEGNSIATEITTFLGQYGQAMNPNLRRSLVRLLCLLRARGTA
DPTTVIPLFFRLLSCNDKVLRRMVHGHIVSDIKKIQSSGHSSRKQLQTFL
FSMVQDPSQVLVKRSLHVLVDLFRKRIWNDAKCANMIATACFHQSMSVSI
IASRFMLNSENKEQSQDSDDDSDNESPEMSRTTRDGQKASDMWKVYNMTG
KKSSKKKKKMERIINRATRVKTSVSSRAISEKNPGHPQLEALMLINDPQE
FAERLFKDLQTRRKKESYENRLIFINLISRLVGTHELILFNFYPFLQRYL
QPAQPEVTRVLAYLTQACHEKVPADVLHPILRGLADTFVSERSSPPSVAA
GLNAIRAICSRVPLAILDEENEYKPEHEQEAALLEDLVQYKTSKDKGIMM
AARSLIALYREIHPGLLQKKDRGRAGAQAVQKGESAHARAYGEHLYATGV
EGIELLNANDSECDAQVEIDAPSDTDADARRGEEETPVNEVVGVGDEVDA
QVEDDIGDEANDTSEDDNISEDKVERTQGDNECENDRRLDTMQILSNEDF
EKIRVRRAAKALGESVRELNTGRAVDPDEIQGPMKRERLTHAERMESIMK
GREGRSKFGRKNDSGGGTSNKQKLKKKSNAMVIHKRRRKNKQLSRRDKQV
AKRRKKDYR*

mRNA from alignment at tig00004442_pilon:510152..512281-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10039.t1 ID=Gchil10039.t1|Name=Gchil10039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00004442_pilon:510152..512281- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCTGCAACAAAGGTGTCGGAAGGACCCGCTTTCGTATAAAGATGA
TTTTCTTTCGCAGCGTCGACATTTCGACGCCCTTCTATCCGCCGCCAATT
TACACCCTTCCGATCACAATCCCCGTCTGGCAGAGGTCGCGTCCTTCATG
AGCGCTGTGGCGCATTGTTACGGTTCAGAGGGAAACAGCATCGCAACCGA
GATAACTACCTTTCTGGGGCAGTACGGCCAGGCCATGAACCCAAACTTGC
GTCGTTCACTTGTTCGACTGCTCTGTCTCCTGCGAGCAAGGGGCACAGCG
GATCCCACAACAGTAATTCCACTGTTTTTCCGTCTTTTATCATGTAATGA
TAAGGTATTACGAAGAATGGTGCACGGGCACATCGTATCCGATATCAAGA
AGATCCAAAGCAGTGGCCATTCAAGTCGGAAGCAATTGCAGACTTTTTTG
TTTTCTATGGTGCAGGACCCCAGCCAAGTTTTGGTCAAGCGCAGCCTACA
CGTGCTAGTCGATTTGTTTCGAAAGCGAATATGGAATGACGCCAAATGCG
CTAACATGATTGCGACCGCTTGTTTTCATCAATCCATGTCTGTCTCCATT
ATTGCTTCGCGCTTCATGCTCAACTCAGAGAACAAGGAGCAAAGTCAAGA
TTCTGATGATGATTCAGATAATGAAAGTCCGGAGATGTCGCGGACAACAC
GAGATGGCCAAAAGGCATCTGACATGTGGAAAGTGTACAACATGACTGGG
AAAAAGTCCTCAAAGAAGAAGAAGAAAATGGAGAGAATCATTAACAGGGC
CACTAGAGTAAAGACTTCTGTTTCATCAAGAGCAATATCCGAAAAGAATC
CCGGTCACCCGCAATTGGAAGCATTGATGCTTATTAACGACCCACAGGAG
TTTGCTGAACGACTTTTCAAAGACCTTCAAACTCGAAGAAAGAAAGAGAG
CTATGAAAACCGGCTTATCTTTATTAACCTAATCTCTCGACTTGTGGGCA
CCCATGAACTTATTTTATTTAACTTTTACCCATTTCTGCAGAGATACTTG
CAACCGGCTCAACCAGAAGTGACACGGGTTTTGGCATATCTAACGCAGGC
ATGCCATGAGAAGGTTCCTGCCGATGTATTGCATCCTATTTTAAGAGGTC
TAGCAGATACATTTGTGTCTGAAAGGAGTTCCCCTCCATCTGTGGCCGCG
GGCTTGAATGCGATTAGAGCTATCTGTTCTCGTGTTCCACTAGCCATATT
GGACGAAGAGAATGAGTACAAACCCGAACATGAACAGGAAGCGGCATTGT
TGGAAGACTTGGTACAGTACAAGACTAGCAAAGATAAAGGAATCATGATG
GCGGCTCGGTCTTTGATTGCTCTGTACAGAGAGATACACCCTGGTCTATT
GCAAAAGAAGGACAGGGGACGGGCTGGGGCTCAGGCCGTACAGAAAGGAG
AATCGGCGCATGCCAGGGCGTACGGGGAACATTTGTATGCTACAGGTGTG
GAGGGAATTGAACTCCTAAACGCCAACGATTCAGAATGCGACGCACAAGT
CGAGATTGATGCGCCAAGCGATACCGATGCAGACGCCAGACGCGGCGAAG
AGGAAACGCCAGTGAACGAAGTTGTTGGAGTTGGTGATGAAGTAGATGCG
CAGGTAGAAGATGATATAGGTGACGAAGCTAATGATACCAGCGAGGATGA
CAACATCAGTGAGGATAAAGTTGAAAGGACGCAAGGTGATAATGAATGTG
AAAACGATAGACGACTAGATACGATGCAAATCCTATCAAATGAGGACTTC
GAAAAGATCCGAGTCCGACGAGCTGCCAAGGCGCTGGGTGAAAGCGTGAG
AGAGCTGAACACGGGGAGAGCGGTTGATCCTGATGAAATTCAAGGACCGA
TGAAACGCGAGCGATTGACGCATGCGGAACGCATGGAGAGCATCATGAAA
GGAAGAGAAGGGCGAAGCAAATTCGGAAGAAAGAATGACAGTGGCGGTGG
CACGAGCAACAAACAGAAATTGAAGAAGAAGTCGAATGCAATGGTGATAC
ACAAGCGAAGAAGAAAAAACAAGCAACTGTCTCGAAGAGACAAGCAAGTT
GCAAAACGAAGGAAGAAGGACTACAGATGA

Coding sequence (CDS) from alignment at tig00004442_pilon:510152..512281-

>Gchil10039.t1 ID=Gchil10039.t1|Name=Gchil10039.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2130bp|location=Sequence derived from alignment at tig00004442_pilon:510152..512281- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCTGCAACAAAGGTGTCGGAAGGACCCGCTTTCGTATAAAGATGA
TTTTCTTTCGCAGCGTCGACATTTCGACGCCCTTCTATCCGCCGCCAATT
TACACCCTTCCGATCACAATCCCCGTCTGGCAGAGGTCGCGTCCTTCATG
AGCGCTGTGGCGCATTGTTACGGTTCAGAGGGAAACAGCATCGCAACCGA
GATAACTACCTTTCTGGGGCAGTACGGCCAGGCCATGAACCCAAACTTGC
GTCGTTCACTTGTTCGACTGCTCTGTCTCCTGCGAGCAAGGGGCACAGCG
GATCCCACAACAGTAATTCCACTGTTTTTCCGTCTTTTATCATGTAATGA
TAAGGTATTACGAAGAATGGTGCACGGGCACATCGTATCCGATATCAAGA
AGATCCAAAGCAGTGGCCATTCAAGTCGGAAGCAATTGCAGACTTTTTTG
TTTTCTATGGTGCAGGACCCCAGCCAAGTTTTGGTCAAGCGCAGCCTACA
CGTGCTAGTCGATTTGTTTCGAAAGCGAATATGGAATGACGCCAAATGCG
CTAACATGATTGCGACCGCTTGTTTTCATCAATCCATGTCTGTCTCCATT
ATTGCTTCGCGCTTCATGCTCAACTCAGAGAACAAGGAGCAAAGTCAAGA
TTCTGATGATGATTCAGATAATGAAAGTCCGGAGATGTCGCGGACAACAC
GAGATGGCCAAAAGGCATCTGACATGTGGAAAGTGTACAACATGACTGGG
AAAAAGTCCTCAAAGAAGAAGAAGAAAATGGAGAGAATCATTAACAGGGC
CACTAGAGTAAAGACTTCTGTTTCATCAAGAGCAATATCCGAAAAGAATC
CCGGTCACCCGCAATTGGAAGCATTGATGCTTATTAACGACCCACAGGAG
TTTGCTGAACGACTTTTCAAAGACCTTCAAACTCGAAGAAAGAAAGAGAG
CTATGAAAACCGGCTTATCTTTATTAACCTAATCTCTCGACTTGTGGGCA
CCCATGAACTTATTTTATTTAACTTTTACCCATTTCTGCAGAGATACTTG
CAACCGGCTCAACCAGAAGTGACACGGGTTTTGGCATATCTAACGCAGGC
ATGCCATGAGAAGGTTCCTGCCGATGTATTGCATCCTATTTTAAGAGGTC
TAGCAGATACATTTGTGTCTGAAAGGAGTTCCCCTCCATCTGTGGCCGCG
GGCTTGAATGCGATTAGAGCTATCTGTTCTCGTGTTCCACTAGCCATATT
GGACGAAGAGAATGAGTACAAACCCGAACATGAACAGGAAGCGGCATTGT
TGGAAGACTTGGTACAGTACAAGACTAGCAAAGATAAAGGAATCATGATG
GCGGCTCGGTCTTTGATTGCTCTGTACAGAGAGATACACCCTGGTCTATT
GCAAAAGAAGGACAGGGGACGGGCTGGGGCTCAGGCCGTACAGAAAGGAG
AATCGGCGCATGCCAGGGCGTACGGGGAACATTTGTATGCTACAGGTGTG
GAGGGAATTGAACTCCTAAACGCCAACGATTCAGAATGCGACGCACAAGT
CGAGATTGATGCGCCAAGCGATACCGATGCAGACGCCAGACGCGGCGAAG
AGGAAACGCCAGTGAACGAAGTTGTTGGAGTTGGTGATGAAGTAGATGCG
CAGGTAGAAGATGATATAGGTGACGAAGCTAATGATACCAGCGAGGATGA
CAACATCAGTGAGGATAAAGTTGAAAGGACGCAAGGTGATAATGAATGTG
AAAACGATAGACGACTAGATACGATGCAAATCCTATCAAATGAGGACTTC
GAAAAGATCCGAGTCCGACGAGCTGCCAAGGCGCTGGGTGAAAGCGTGAG
AGAGCTGAACACGGGGAGAGCGGTTGATCCTGATGAAATTCAAGGACCGA
TGAAACGCGAGCGATTGACGCATGCGGAACGCATGGAGAGCATCATGAAA
GGAAGAGAAGGGCGAAGCAAATTCGGAAGAAAGAATGACAGTGGCGGTGG
CACGAGCAACAAACAGAAATTGAAGAAGAAGTCGAATGCAATGGTGATAC
ACAAGCGAAGAAGAAAAAACAAGCAACTGTCTCGAAGAGACAAGCAAGTT
GCAAAACGAAGGAAGAAGGACTACAGATGA