Gchil10038.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10038.t1
Unique NameGchil10038.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:509551..510084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703035.1
Preferred nameNIFU1
PFAMsNifU
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
Evalue5.22e-60
EggNOG OGsCOG0694@1|root,KOG2358@2759|Eukaryota
EC6.1.1.6
DescriptionNFU1 iron-sulfur cluster scaffold
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10038Gchil10038Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 509551..510084 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10038.t1.start1Gchil10038.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 509551..509553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10038.t1.CDS1Gchil10038.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 509551..510084 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10038.t1.exon1Gchil10038.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 509551..510084 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10038.t1.stop1Gchil10038.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 510082..510084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10038.t1Gchil10038.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 509551..510084 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10038.t1 ID=Gchil10038.t1|Name=Gchil10038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=178bp
MVDAQPRVSPVPTESVPSDSADVLELTWENVEMVLDEMRPYLMSDGGNVS
IADIDGATVKLTLEGACNSCASSTVTMQMGLERRLREKIPEIEEVVQAQP
EGPPLSEEGIEKTLDEVRPFLNVAGGTIQLINLNLDSAVPTARLKMTGSG
SAINSVKVEITHRLKRNYIQLANVIFD*
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spliced messenger RNA

>Gchil10038.t1 ID=Gchil10038.t1|Name=Gchil10038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004442_pilon:509551..510084+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGACGCGCAGCCAAGGGTATCCCCGGTGCCCACCGAGTCGGTGCC
GTCCGATTCGGCCGACGTTCTGGAGCTCACGTGGGAAAACGTGGAGATGG
TGCTGGATGAGATGCGACCCTATCTCATGTCCGACGGCGGCAACGTATCA
ATTGCCGACATTGACGGCGCCACCGTCAAACTCACCTTGGAGGGTGCGTG
CAACTCGTGCGCCTCCAGCACCGTCACCATGCAGATGGGGCTGGAACGCC
GTTTGCGCGAGAAGATCCCTGAGATTGAGGAAGTTGTTCAGGCGCAGCCG
GAGGGCCCCCCTCTCAGTGAGGAAGGCATCGAGAAAACACTCGACGAGGT
CAGACCCTTTCTCAACGTCGCAGGCGGCACCATTCAATTGATTAACCTCA
ACCTCGATTCCGCAGTTCCTACAGCACGGCTCAAAATGACAGGCTCAGGC
TCGGCCATAAACTCTGTCAAGGTTGAGATCACGCATCGCCTTAAAAGAAA
TTATATCCAGCTAGCAAACGTAATCTTCGATTAG
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protein sequence of Gchil10038.t1

>Gchil10038.t1 ID=Gchil10038.t1|Name=Gchil10038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=178bp
MVDAQPRVSPVPTESVPSDSADVLELTWENVEMVLDEMRPYLMSDGGNVS
IADIDGATVKLTLEGACNSCASSTVTMQMGLERRLREKIPEIEEVVQAQP
EGPPLSEEGIEKTLDEVRPFLNVAGGTIQLINLNLDSAVPTARLKMTGSG
SAINSVKVEITHRLKRNYIQLANVIFD*
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mRNA from alignment at tig00004442_pilon:509551..510084+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10038.t1 ID=Gchil10038.t1|Name=Gchil10038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004442_pilon:509551..510084+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGACGCGCAGCCAAGGGTATCCCCGGTGCCCACCGAGTCGGTGCC
GTCCGATTCGGCCGACGTTCTGGAGCTCACGTGGGAAAACGTGGAGATGG
TGCTGGATGAGATGCGACCCTATCTCATGTCCGACGGCGGCAACGTATCA
ATTGCCGACATTGACGGCGCCACCGTCAAACTCACCTTGGAGGGTGCGTG
CAACTCGTGCGCCTCCAGCACCGTCACCATGCAGATGGGGCTGGAACGCC
GTTTGCGCGAGAAGATCCCTGAGATTGAGGAAGTTGTTCAGGCGCAGCCG
GAGGGCCCCCCTCTCAGTGAGGAAGGCATCGAGAAAACACTCGACGAGGT
CAGACCCTTTCTCAACGTCGCAGGCGGCACCATTCAATTGATTAACCTCA
ACCTCGATTCCGCAGTTCCTACAGCACGGCTCAAAATGACAGGCTCAGGC
TCGGCCATAAACTCTGTCAAGGTTGAGATCACGCATCGCCTTAAAAGAAA
TTATATCCAGCTAGCAAACGTAATCTTCGATTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:509551..510084+

>Gchil10038.t1 ID=Gchil10038.t1|Name=Gchil10038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00004442_pilon:509551..510084+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGACGCGCAGCCAAGGGTATCCCCGGTGCCCACCGAGTCGGTGCC
GTCCGATTCGGCCGACGTTCTGGAGCTCACGTGGGAAAACGTGGAGATGG
TGCTGGATGAGATGCGACCCTATCTCATGTCCGACGGCGGCAACGTATCA
ATTGCCGACATTGACGGCGCCACCGTCAAACTCACCTTGGAGGGTGCGTG
CAACTCGTGCGCCTCCAGCACCGTCACCATGCAGATGGGGCTGGAACGCC
GTTTGCGCGAGAAGATCCCTGAGATTGAGGAAGTTGTTCAGGCGCAGCCG
GAGGGCCCCCCTCTCAGTGAGGAAGGCATCGAGAAAACACTCGACGAGGT
CAGACCCTTTCTCAACGTCGCAGGCGGCACCATTCAATTGATTAACCTCA
ACCTCGATTCCGCAGTTCCTACAGCACGGCTCAAAATGACAGGCTCAGGC
TCGGCCATAAACTCTGTCAAGGTTGAGATCACGCATCGCCTTAAAAGAAA
TTATATCCAGCTAGCAAACGTAATCTTCGATTAG
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