Gchil10036.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10036.t1
Unique NameGchil10036.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:504996..506084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707302.1
PFAMsCSTF2_hinge,CSTF_C,RRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K14407
KEGG Pathwayko03015,map03015
Evalue6.72e-41
EggNOG OGsCOG0724@1|root,KOG0108@2759|Eukaryota
Descriptionpre-mRNA cleavage required for polyadenylation
COG categoryH
BRITEko00000,ko00001,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10036Gchil10036Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 504996..506084 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10036.t1.stop1Gchil10036.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 504996..504998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10036.t1.CDS1Gchil10036.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 504996..506084 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10036.t1.exon1Gchil10036.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 504996..506084 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10036.t1.start1Gchil10036.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 506082..506084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10036.t1Gchil10036.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 504996..506084 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10036.t1 ID=Gchil10036.t1|Name=Gchil10036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=363bp
MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNDTGRAKGY
GFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARTNNTQNTS
APQNKPSAPNMAQKPALQIPAHPNMQHAGLPPALSSANPSMERMSLPEIH
QTMAHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQLMLGMVPPPMMPNPQ
PHPPMQPRPPPQPRQRQPPPAPPRNQPPPRNQPPPGRNQPPPRNQPPPPL
SHVAPPPHMNPPPPLQNGPPPQPNMPHGGMQMPGMPFAQGMGEQEAFLQR
VMNMTQEEISQLPAEYMNYVLELKQFLAMHGAGSINPGMNQPMPPGMPPG
GPHPPQPQKQFR*
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spliced messenger RNA

>Gchil10036.t1 ID=Gchil10036.t1|Name=Gchil10036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004442_pilon:504996..506084- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGGCCTCCGGGCACCACCGTCTTTGTCGGTAACATATCATACGA
TACTACCGAGGAGCAGCTGAACGAAGTGTTCTCTCAAGTAGGAAATGTCG
TCAACTTTCGTCTCATGCACGACAACGACACCGGGCGTGCCAAAGGGTAT
GGTTTCTGCGAATACGAGGACAAAGAAACCGCCATGAGTGCCCGACGCAA
CCTCAACGGCACTATGCTGAACGGGCGGCCCCTTCGCGTAGACTTCACGG
ACAGTGACAAACAGATCGCCGCACGAACAAATAACACTCAGAACACCTCC
GCTCCGCAGAACAAACCGAGCGCTCCGAACATGGCTCAGAAACCTGCCCT
TCAAATCCCGGCTCATCCGAATATGCAACATGCGGGCTTGCCACCAGCCC
TCTCTTCGGCCAATCCCTCGATGGAGCGCATGTCTTTGCCTGAAATTCAT
CAAACCATGGCACATCTCAAGAAGGCTATTGTGCAGAATCCGAACGAGAT
GCGCGACTTATTGCTGGCAAATCCCCGTCTTGCGCAAGCAATAATGCAGG
GTCAGCTCATGCTGGGAATGGTCCCCCCGCCTATGATGCCCAATCCACAG
CCCCATCCGCCGATGCAACCAAGGCCTCCGCCACAACCAAGACAACGACA
ACCACCACCTGCACCACCTCGTAATCAACCACCACCGCGTAATCAGCCCC
CACCCGGTCGTAATCAGCCCCCACCTCGTAATCAACCCCCACCGCCCCTC
TCGCATGTTGCTCCCCCCCCACACATGAATCCACCTCCACCCTTACAGAA
TGGCCCTCCTCCGCAACCCAATATGCCCCATGGGGGCATGCAAATGCCGG
GAATGCCCTTTGCACAAGGAATGGGTGAACAAGAGGCATTCCTTCAAAGA
GTCATGAATATGACTCAGGAGGAGATTAGCCAACTACCCGCGGAGTACAT
GAACTATGTGCTTGAGCTGAAACAGTTCCTAGCCATGCATGGAGCTGGCA
GTATTAACCCGGGCATGAACCAGCCCATGCCGCCTGGGATGCCCCCCGGT
GGACCGCATCCACCCCAACCTCAGAAACAATTCCGGTAA
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protein sequence of Gchil10036.t1

>Gchil10036.t1 ID=Gchil10036.t1|Name=Gchil10036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=363bp
MGRPPGTTVFVGNISYDTTEEQLNEVFSQVGNVVNFRLMHDNDTGRAKGY
GFCEYEDKETAMSARRNLNGTMLNGRPLRVDFTDSDKQIAARTNNTQNTS
APQNKPSAPNMAQKPALQIPAHPNMQHAGLPPALSSANPSMERMSLPEIH
QTMAHLKKAIVQNPNEMRDLLLANPRLAQAIMQGQLMLGMVPPPMMPNPQ
PHPPMQPRPPPQPRQRQPPPAPPRNQPPPRNQPPPGRNQPPPRNQPPPPL
SHVAPPPHMNPPPPLQNGPPPQPNMPHGGMQMPGMPFAQGMGEQEAFLQR
VMNMTQEEISQLPAEYMNYVLELKQFLAMHGAGSINPGMNQPMPPGMPPG
GPHPPQPQKQFR*
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mRNA from alignment at tig00004442_pilon:504996..506084-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10036.t1 ID=Gchil10036.t1|Name=Gchil10036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004442_pilon:504996..506084- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGGCCTCCGGGCACCACCGTCTTTGTCGGTAACATATCATACGA
TACTACCGAGGAGCAGCTGAACGAAGTGTTCTCTCAAGTAGGAAATGTCG
TCAACTTTCGTCTCATGCACGACAACGACACCGGGCGTGCCAAAGGGTAT
GGTTTCTGCGAATACGAGGACAAAGAAACCGCCATGAGTGCCCGACGCAA
CCTCAACGGCACTATGCTGAACGGGCGGCCCCTTCGCGTAGACTTCACGG
ACAGTGACAAACAGATCGCCGCACGAACAAATAACACTCAGAACACCTCC
GCTCCGCAGAACAAACCGAGCGCTCCGAACATGGCTCAGAAACCTGCCCT
TCAAATCCCGGCTCATCCGAATATGCAACATGCGGGCTTGCCACCAGCCC
TCTCTTCGGCCAATCCCTCGATGGAGCGCATGTCTTTGCCTGAAATTCAT
CAAACCATGGCACATCTCAAGAAGGCTATTGTGCAGAATCCGAACGAGAT
GCGCGACTTATTGCTGGCAAATCCCCGTCTTGCGCAAGCAATAATGCAGG
GTCAGCTCATGCTGGGAATGGTCCCCCCGCCTATGATGCCCAATCCACAG
CCCCATCCGCCGATGCAACCAAGGCCTCCGCCACAACCAAGACAACGACA
ACCACCACCTGCACCACCTCGTAATCAACCACCACCGCGTAATCAGCCCC
CACCCGGTCGTAATCAGCCCCCACCTCGTAATCAACCCCCACCGCCCCTC
TCGCATGTTGCTCCCCCCCCACACATGAATCCACCTCCACCCTTACAGAA
TGGCCCTCCTCCGCAACCCAATATGCCCCATGGGGGCATGCAAATGCCGG
GAATGCCCTTTGCACAAGGAATGGGTGAACAAGAGGCATTCCTTCAAAGA
GTCATGAATATGACTCAGGAGGAGATTAGCCAACTACCCGCGGAGTACAT
GAACTATGTGCTTGAGCTGAAACAGTTCCTAGCCATGCATGGAGCTGGCA
GTATTAACCCGGGCATGAACCAGCCCATGCCGCCTGGGATGCCCCCCGGT
GGACCGCATCCACCCCAACCTCAGAAACAATTCCGGTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:504996..506084-

>Gchil10036.t1 ID=Gchil10036.t1|Name=Gchil10036.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00004442_pilon:504996..506084- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGGCCTCCGGGCACCACCGTCTTTGTCGGTAACATATCATACGA
TACTACCGAGGAGCAGCTGAACGAAGTGTTCTCTCAAGTAGGAAATGTCG
TCAACTTTCGTCTCATGCACGACAACGACACCGGGCGTGCCAAAGGGTAT
GGTTTCTGCGAATACGAGGACAAAGAAACCGCCATGAGTGCCCGACGCAA
CCTCAACGGCACTATGCTGAACGGGCGGCCCCTTCGCGTAGACTTCACGG
ACAGTGACAAACAGATCGCCGCACGAACAAATAACACTCAGAACACCTCC
GCTCCGCAGAACAAACCGAGCGCTCCGAACATGGCTCAGAAACCTGCCCT
TCAAATCCCGGCTCATCCGAATATGCAACATGCGGGCTTGCCACCAGCCC
TCTCTTCGGCCAATCCCTCGATGGAGCGCATGTCTTTGCCTGAAATTCAT
CAAACCATGGCACATCTCAAGAAGGCTATTGTGCAGAATCCGAACGAGAT
GCGCGACTTATTGCTGGCAAATCCCCGTCTTGCGCAAGCAATAATGCAGG
GTCAGCTCATGCTGGGAATGGTCCCCCCGCCTATGATGCCCAATCCACAG
CCCCATCCGCCGATGCAACCAAGGCCTCCGCCACAACCAAGACAACGACA
ACCACCACCTGCACCACCTCGTAATCAACCACCACCGCGTAATCAGCCCC
CACCCGGTCGTAATCAGCCCCCACCTCGTAATCAACCCCCACCGCCCCTC
TCGCATGTTGCTCCCCCCCCACACATGAATCCACCTCCACCCTTACAGAA
TGGCCCTCCTCCGCAACCCAATATGCCCCATGGGGGCATGCAAATGCCGG
GAATGCCCTTTGCACAAGGAATGGGTGAACAAGAGGCATTCCTTCAAAGA
GTCATGAATATGACTCAGGAGGAGATTAGCCAACTACCCGCGGAGTACAT
GAACTATGTGCTTGAGCTGAAACAGTTCCTAGCCATGCATGGAGCTGGCA
GTATTAACCCGGGCATGAACCAGCCCATGCCGCCTGGGATGCCCCCCGGT
GGACCGCATCCACCCCAACCTCAGAAACAATTCCGGTAA
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