Gchil10035.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10035.t1
Unique Name	Gchil10035.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	673

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:502750..504768 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9940.ENSOARP00000013920
Preferred name	ORC3
PFAMs	ORC3_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K02605
KEGG Pathway	ko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG Module	M00284
GOs	GO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000781,GO:0000784,GO:0000808,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005664,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006270,GO:0006725,GO:0006807,GO:0006928,GO:0007049,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007610,GO:0007611,GO:0007612,GO:0007631,GO:0007635,GO:0008150,GO:0008152,GO:0008283,GO:0008306,GO:0008355,GO:0009058,GO:0009059,GO:0009888,GO:0009987,GO:0010631,GO:0016043,GO:0016477,GO:0016604,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030536,GO:0030537,GO:0030707,GO:0030855,GO:0031261,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0032993,GO:0033260,GO:0034622,GO:0034641,GO:0034645,GO:0036387,GO:0036388,GO:0040011,GO:0042048,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051674,GO:0051704,GO:0060429,GO:0061351,GO:0065003,GO:0065004,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090130,GO:0090132,GO:0090304,GO:0097159,GO:0098687,GO:1901360,GO:1901363,GO:1901576,GO:1902299,GO:1903047,GO:1990837
Evalue	3.69e-16
EggNOG OGs	KOG2538@1\|root,KOG2538@2759\|Eukaryota,38GJJ@33154\|Opisthokonta,3BDXG@33208\|Metazoa,3CWXM@33213\|Bilateria,47ZK2@7711\|Chordata,48YU5@7742\|Vertebrata,3JDI0@40674\|Mammalia,4IWGB@91561\|Cetartiodactyla
Description	Origin recognition complex, subunit 3
COG category	L
BRITE	ko00000,ko00001,ko00002,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10035	Gchil10035	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 502750..504768 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10035.t1.start1	Gchil10035.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 502750..502752 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10035.t1.CDS1	Gchil10035.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 502750..504768 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10035.t1.exon1	Gchil10035.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 502750..504768 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10035.t1.stop1	Gchil10035.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 504766..504768 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10035.t1	Gchil10035.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 502750..504768 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:502750..504768+
coding sequence from alignment at tig00004442_pilon:502750..504768+

mRNA sequence

>Gchil10035.t1 ID=Gchil10035.t1|Name=Gchil10035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=673bp
MEFTEEKLRAHELVSAPTTVLCKRPKSRLTRKVPNPAQEAWKRFECSVGE
ELNHLYERSLTRLSQVVNHFSEDNEIVAACIVMGAASAAGDREQTFERIV
KNLSTREDARLIYLEAVDHGNVGTLLQKLDDLDFKRQTIISVDDIDRLPE
STIRDMVYKCGKLRSSGEAKLLANQGIPPITLVLGVGVSDSRFHSALGIE
EAALILPTVISMPSPVQCFRHIVNAIQKTGLEFSRGVFDFLYSEFIHQDR
TVSTVMRFLRLLITLHFYSEPLAAVFCEVLEDRSTNDHEDRRARENAMKR
NLFKLLKKEHLCRVEKKYIEDDSSQNLPVQEASRNICLSAFEQFRTRRAR
LATLQRLIFGFCEMCNITPRWEYTNDPHSSDYIDDLHTNVFRAFLVEDGN
GEIKFDRFIAPLFGEIRKASRPMIRRMLARIGEEISSLAPLHDEEMSSLS
RETATLLKELNNTSGEQMHPPQKRRTQRTRAAKYARGGGAARNRRQQIIT
AMTDEVQSSDPLVPVRKKLESIILRLTKSIKPLKEIPLHETILVSEIGEL
QSFSGGMGGPAEPRSSLFTTMRQPRKVLGPLSPSFRHDTAVAYRILAEGG
RLVGLYDWYNSFASVVVAGAAKQDNGGNVQIENVRQVELQARFARACSEL
EALGVMKYTNRKSDHVARIVFE*

spliced messenger RNA

>Gchil10035.t1 ID=Gchil10035.t1|Name=Gchil10035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2019bp|location=Sequence derived from alignment at tig00004442_pilon:502750..504768+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATTCACAGAAGAGAAGCTAAGAGCACATGAACTTGTATCAGCCCC
TACGACAGTCCTATGTAAACGGCCGAAATCTCGCCTCACAAGAAAAGTAC
CGAACCCTGCTCAAGAAGCATGGAAGCGATTCGAATGTTCTGTTGGAGAA
GAACTAAATCACCTATATGAACGCTCTCTAACCAGGCTTTCCCAAGTCGT
AAACCATTTTTCCGAAGACAATGAAATTGTAGCAGCGTGTATTGTGATGG
GTGCAGCCTCTGCTGCAGGGGATCGTGAGCAAACTTTTGAAAGGATTGTG
AAAAATCTGTCAACCAGAGAGGATGCACGTCTTATCTATCTGGAAGCGGT
AGACCATGGAAACGTTGGAACATTACTGCAAAAGCTCGACGATCTTGATT
TCAAACGACAAACAATAATATCTGTGGACGACATCGATAGACTACCAGAG
TCTACAATTCGTGACATGGTCTACAAGTGCGGAAAACTTCGTTCGTCTGG
AGAAGCAAAACTTCTTGCCAACCAAGGAATACCGCCGATTACTCTTGTAT
TAGGAGTAGGTGTGTCAGACTCTCGATTTCACTCTGCCCTCGGTATTGAG
GAAGCTGCTCTAATTCTTCCCACTGTTATATCGATGCCTTCCCCTGTACA
GTGTTTTCGACATATTGTGAACGCTATACAGAAGACCGGCTTAGAGTTCT
CTAGAGGAGTATTTGATTTTTTGTACAGCGAATTTATCCATCAAGACCGC
ACAGTGTCCACGGTAATGCGGTTTTTGCGATTATTGATCACGTTGCACTT
CTACAGCGAACCCCTGGCAGCAGTGTTTTGCGAAGTTCTTGAAGATCGAT
CCACAAATGACCATGAAGACAGACGTGCGAGAGAAAATGCGATGAAACGA
AATCTGTTTAAGCTTTTGAAAAAAGAACATTTATGTAGAGTAGAGAAAAA
GTACATCGAGGATGATAGCTCGCAAAATCTACCTGTGCAAGAAGCCAGTC
GCAACATATGTTTGAGTGCATTTGAACAATTTCGGACGAGAAGAGCAAGG
CTTGCGACTCTTCAACGACTCATATTCGGGTTTTGCGAAATGTGTAATAT
CACTCCGCGCTGGGAATACACTAATGACCCACACAGTAGCGACTACATTG
ATGATCTACATACCAATGTGTTCAGGGCGTTCCTTGTTGAAGATGGAAAT
GGTGAAATCAAGTTTGACCGCTTTATTGCTCCTTTGTTTGGGGAAATAAG
AAAGGCAAGCAGACCAATGATACGAAGAATGCTTGCAAGAATTGGGGAAG
AAATATCTTCTTTGGCACCCTTGCATGATGAAGAAATGAGTTCGCTGAGT
AGAGAAACTGCAACGCTTCTAAAAGAATTGAATAACACGTCTGGCGAGCA
AATGCATCCACCACAAAAAAGGCGGACGCAACGAACCCGTGCCGCTAAAT
ACGCGAGAGGGGGCGGCGCCGCCAGAAACCGTCGCCAGCAGATTATTACC
GCTATGACGGATGAGGTGCAGAGCTCTGATCCCTTGGTACCAGTTCGCAA
AAAGCTGGAGTCCATCATTTTGCGTTTGACCAAGTCTATAAAGCCATTGA
AAGAAATTCCTCTCCACGAAACAATACTGGTGTCTGAAATTGGCGAACTG
CAATCCTTCTCAGGAGGAATGGGAGGTCCAGCAGAGCCAAGGTCCTCATT
GTTCACGACAATGCGGCAGCCGCGTAAAGTACTGGGACCTCTCTCTCCAT
CTTTCCGTCATGACACAGCGGTCGCGTACCGAATTCTAGCCGAAGGAGGA
CGACTAGTCGGCCTGTACGATTGGTACAACAGCTTTGCGTCGGTTGTAGT
CGCGGGTGCCGCCAAACAAGATAATGGAGGAAATGTTCAAATCGAAAACG
TCCGCCAAGTCGAGCTTCAAGCTCGGTTTGCAAGAGCATGCTCTGAGTTG
GAGGCCTTGGGGGTGATGAAATACACTAACCGAAAATCAGATCATGTTGC
CAGAATTGTTTTCGAGTAA

protein sequence of Gchil10035.t1

>Gchil10035.t1 ID=Gchil10035.t1|Name=Gchil10035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=673bp
MEFTEEKLRAHELVSAPTTVLCKRPKSRLTRKVPNPAQEAWKRFECSVGE
ELNHLYERSLTRLSQVVNHFSEDNEIVAACIVMGAASAAGDREQTFERIV
KNLSTREDARLIYLEAVDHGNVGTLLQKLDDLDFKRQTIISVDDIDRLPE
STIRDMVYKCGKLRSSGEAKLLANQGIPPITLVLGVGVSDSRFHSALGIE
EAALILPTVISMPSPVQCFRHIVNAIQKTGLEFSRGVFDFLYSEFIHQDR
TVSTVMRFLRLLITLHFYSEPLAAVFCEVLEDRSTNDHEDRRARENAMKR
NLFKLLKKEHLCRVEKKYIEDDSSQNLPVQEASRNICLSAFEQFRTRRAR
LATLQRLIFGFCEMCNITPRWEYTNDPHSSDYIDDLHTNVFRAFLVEDGN
GEIKFDRFIAPLFGEIRKASRPMIRRMLARIGEEISSLAPLHDEEMSSLS
RETATLLKELNNTSGEQMHPPQKRRTQRTRAAKYARGGGAARNRRQQIIT
AMTDEVQSSDPLVPVRKKLESIILRLTKSIKPLKEIPLHETILVSEIGEL
QSFSGGMGGPAEPRSSLFTTMRQPRKVLGPLSPSFRHDTAVAYRILAEGG
RLVGLYDWYNSFASVVVAGAAKQDNGGNVQIENVRQVELQARFARACSEL
EALGVMKYTNRKSDHVARIVFE*

mRNA from alignment at tig00004442_pilon:502750..504768+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10035.t1 ID=Gchil10035.t1|Name=Gchil10035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2019bp|location=Sequence derived from alignment at tig00004442_pilon:502750..504768+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAATTCACAGAAGAGAAGCTAAGAGCACATGAACTTGTATCAGCCCC
TACGACAGTCCTATGTAAACGGCCGAAATCTCGCCTCACAAGAAAAGTAC
CGAACCCTGCTCAAGAAGCATGGAAGCGATTCGAATGTTCTGTTGGAGAA
GAACTAAATCACCTATATGAACGCTCTCTAACCAGGCTTTCCCAAGTCGT
AAACCATTTTTCCGAAGACAATGAAATTGTAGCAGCGTGTATTGTGATGG
GTGCAGCCTCTGCTGCAGGGGATCGTGAGCAAACTTTTGAAAGGATTGTG
AAAAATCTGTCAACCAGAGAGGATGCACGTCTTATCTATCTGGAAGCGGT
AGACCATGGAAACGTTGGAACATTACTGCAAAAGCTCGACGATCTTGATT
TCAAACGACAAACAATAATATCTGTGGACGACATCGATAGACTACCAGAG
TCTACAATTCGTGACATGGTCTACAAGTGCGGAAAACTTCGTTCGTCTGG
AGAAGCAAAACTTCTTGCCAACCAAGGAATACCGCCGATTACTCTTGTAT
TAGGAGTAGGTGTGTCAGACTCTCGATTTCACTCTGCCCTCGGTATTGAG
GAAGCTGCTCTAATTCTTCCCACTGTTATATCGATGCCTTCCCCTGTACA
GTGTTTTCGACATATTGTGAACGCTATACAGAAGACCGGCTTAGAGTTCT
CTAGAGGAGTATTTGATTTTTTGTACAGCGAATTTATCCATCAAGACCGC
ACAGTGTCCACGGTAATGCGGTTTTTGCGATTATTGATCACGTTGCACTT
CTACAGCGAACCCCTGGCAGCAGTGTTTTGCGAAGTTCTTGAAGATCGAT
CCACAAATGACCATGAAGACAGACGTGCGAGAGAAAATGCGATGAAACGA
AATCTGTTTAAGCTTTTGAAAAAAGAACATTTATGTAGAGTAGAGAAAAA
GTACATCGAGGATGATAGCTCGCAAAATCTACCTGTGCAAGAAGCCAGTC
GCAACATATGTTTGAGTGCATTTGAACAATTTCGGACGAGAAGAGCAAGG
CTTGCGACTCTTCAACGACTCATATTCGGGTTTTGCGAAATGTGTAATAT
CACTCCGCGCTGGGAATACACTAATGACCCACACAGTAGCGACTACATTG
ATGATCTACATACCAATGTGTTCAGGGCGTTCCTTGTTGAAGATGGAAAT
GGTGAAATCAAGTTTGACCGCTTTATTGCTCCTTTGTTTGGGGAAATAAG
AAAGGCAAGCAGACCAATGATACGAAGAATGCTTGCAAGAATTGGGGAAG
AAATATCTTCTTTGGCACCCTTGCATGATGAAGAAATGAGTTCGCTGAGT
AGAGAAACTGCAACGCTTCTAAAAGAATTGAATAACACGTCTGGCGAGCA
AATGCATCCACCACAAAAAAGGCGGACGCAACGAACCCGTGCCGCTAAAT
ACGCGAGAGGGGGCGGCGCCGCCAGAAACCGTCGCCAGCAGATTATTACC
GCTATGACGGATGAGGTGCAGAGCTCTGATCCCTTGGTACCAGTTCGCAA
AAAGCTGGAGTCCATCATTTTGCGTTTGACCAAGTCTATAAAGCCATTGA
AAGAAATTCCTCTCCACGAAACAATACTGGTGTCTGAAATTGGCGAACTG
CAATCCTTCTCAGGAGGAATGGGAGGTCCAGCAGAGCCAAGGTCCTCATT
GTTCACGACAATGCGGCAGCCGCGTAAAGTACTGGGACCTCTCTCTCCAT
CTTTCCGTCATGACACAGCGGTCGCGTACCGAATTCTAGCCGAAGGAGGA
CGACTAGTCGGCCTGTACGATTGGTACAACAGCTTTGCGTCGGTTGTAGT
CGCGGGTGCCGCCAAACAAGATAATGGAGGAAATGTTCAAATCGAAAACG
TCCGCCAAGTCGAGCTTCAAGCTCGGTTTGCAAGAGCATGCTCTGAGTTG
GAGGCCTTGGGGGTGATGAAATACACTAACCGAAAATCAGATCATGTTGC
CAGAATTGTTTTCGAGTAA

Coding sequence (CDS) from alignment at tig00004442_pilon:502750..504768+

>Gchil10035.t1 ID=Gchil10035.t1|Name=Gchil10035.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2019bp|location=Sequence derived from alignment at tig00004442_pilon:502750..504768+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAATTCACAGAAGAGAAGCTAAGAGCACATGAACTTGTATCAGCCCC
TACGACAGTCCTATGTAAACGGCCGAAATCTCGCCTCACAAGAAAAGTAC
CGAACCCTGCTCAAGAAGCATGGAAGCGATTCGAATGTTCTGTTGGAGAA
GAACTAAATCACCTATATGAACGCTCTCTAACCAGGCTTTCCCAAGTCGT
AAACCATTTTTCCGAAGACAATGAAATTGTAGCAGCGTGTATTGTGATGG
GTGCAGCCTCTGCTGCAGGGGATCGTGAGCAAACTTTTGAAAGGATTGTG
AAAAATCTGTCAACCAGAGAGGATGCACGTCTTATCTATCTGGAAGCGGT
AGACCATGGAAACGTTGGAACATTACTGCAAAAGCTCGACGATCTTGATT
TCAAACGACAAACAATAATATCTGTGGACGACATCGATAGACTACCAGAG
TCTACAATTCGTGACATGGTCTACAAGTGCGGAAAACTTCGTTCGTCTGG
AGAAGCAAAACTTCTTGCCAACCAAGGAATACCGCCGATTACTCTTGTAT
TAGGAGTAGGTGTGTCAGACTCTCGATTTCACTCTGCCCTCGGTATTGAG
GAAGCTGCTCTAATTCTTCCCACTGTTATATCGATGCCTTCCCCTGTACA
GTGTTTTCGACATATTGTGAACGCTATACAGAAGACCGGCTTAGAGTTCT
CTAGAGGAGTATTTGATTTTTTGTACAGCGAATTTATCCATCAAGACCGC
ACAGTGTCCACGGTAATGCGGTTTTTGCGATTATTGATCACGTTGCACTT
CTACAGCGAACCCCTGGCAGCAGTGTTTTGCGAAGTTCTTGAAGATCGAT
CCACAAATGACCATGAAGACAGACGTGCGAGAGAAAATGCGATGAAACGA
AATCTGTTTAAGCTTTTGAAAAAAGAACATTTATGTAGAGTAGAGAAAAA
GTACATCGAGGATGATAGCTCGCAAAATCTACCTGTGCAAGAAGCCAGTC
GCAACATATGTTTGAGTGCATTTGAACAATTTCGGACGAGAAGAGCAAGG
CTTGCGACTCTTCAACGACTCATATTCGGGTTTTGCGAAATGTGTAATAT
CACTCCGCGCTGGGAATACACTAATGACCCACACAGTAGCGACTACATTG
ATGATCTACATACCAATGTGTTCAGGGCGTTCCTTGTTGAAGATGGAAAT
GGTGAAATCAAGTTTGACCGCTTTATTGCTCCTTTGTTTGGGGAAATAAG
AAAGGCAAGCAGACCAATGATACGAAGAATGCTTGCAAGAATTGGGGAAG
AAATATCTTCTTTGGCACCCTTGCATGATGAAGAAATGAGTTCGCTGAGT
AGAGAAACTGCAACGCTTCTAAAAGAATTGAATAACACGTCTGGCGAGCA
AATGCATCCACCACAAAAAAGGCGGACGCAACGAACCCGTGCCGCTAAAT
ACGCGAGAGGGGGCGGCGCCGCCAGAAACCGTCGCCAGCAGATTATTACC
GCTATGACGGATGAGGTGCAGAGCTCTGATCCCTTGGTACCAGTTCGCAA
AAAGCTGGAGTCCATCATTTTGCGTTTGACCAAGTCTATAAAGCCATTGA
AAGAAATTCCTCTCCACGAAACAATACTGGTGTCTGAAATTGGCGAACTG
CAATCCTTCTCAGGAGGAATGGGAGGTCCAGCAGAGCCAAGGTCCTCATT
GTTCACGACAATGCGGCAGCCGCGTAAAGTACTGGGACCTCTCTCTCCAT
CTTTCCGTCATGACACAGCGGTCGCGTACCGAATTCTAGCCGAAGGAGGA
CGACTAGTCGGCCTGTACGATTGGTACAACAGCTTTGCGTCGGTTGTAGT
CGCGGGTGCCGCCAAACAAGATAATGGAGGAAATGTTCAAATCGAAAACG
TCCGCCAAGTCGAGCTTCAAGCTCGGTTTGCAAGAGCATGCTCTGAGTTG
GAGGCCTTGGGGGTGATGAAATACACTAACCGAAAATCAGATCATGTTGC
CAGAATTGTTTTCGAGTAA