Gchil10031.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10031.t1
Unique NameGchil10031.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:469653..470309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005648419.1
PFAMsTPMT
Max annot lvl3041|Chlorophyta
KEGG koko:K21552
Evalue8.5e-36
EggNOG OGs28JNP@1|root,2QS1V@2759|Eukaryota,37Q74@33090|Viridiplantae,34IKB@3041|Chlorophyta
EC2.1.1.165
DescriptionThiopurine S-methyltransferase (TPMT)
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10031Gchil10031Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 469653..470309 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10031.t1.start1Gchil10031.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 469653..469655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10031.t1.CDS1Gchil10031.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 469653..470309 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10031.t1.exon1Gchil10031.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 469653..470309 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10031.t1.stop1Gchil10031.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 470307..470309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10031.t1Gchil10031.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 469653..470309 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10031.t1 ID=Gchil10031.t1|Name=Gchil10031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp
MAHHVEEPTACPWESMWQEGVRPGEYFDKNSALPELVENIKNGCIQKGQA
AFIPGCGRGYDVEVLSRTGLFDKVIGMDISSTSVREANKYLKSIDPELPD
NFEVKQGDFFDNHLFFEPFCLVYDYTFFCAIPLEKRKEWAQRMKSLVRKG
GDLITVMYPVGKDHSEGGPPFGTDPKAYEHLLEGDGGFERRDGPRLIDDD
KSHVGRVGRTWWCRWERV*
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spliced messenger RNA

>Gchil10031.t1 ID=Gchil10031.t1|Name=Gchil10031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00004442_pilon:469653..470309+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACATCATGTCGAGGAGCCGACGGCTTGTCCATGGGAATCGATGTG
GCAAGAGGGTGTCCGTCCTGGAGAATACTTCGACAAAAATTCTGCACTCC
CTGAGCTCGTGGAGAATATTAAAAATGGATGCATACAAAAAGGTCAGGCA
GCATTTATTCCTGGATGCGGCCGTGGCTATGATGTCGAAGTGTTGTCTCG
AACTGGGTTATTCGACAAAGTCATCGGAATGGATATTTCATCAACGAGCG
TTCGTGAGGCAAACAAATATCTGAAGTCGATCGACCCCGAGCTACCGGAT
AATTTCGAAGTAAAACAAGGAGATTTCTTCGACAACCACTTGTTTTTTGA
ACCATTCTGTCTCGTTTATGATTACACATTTTTCTGTGCCATCCCCTTGG
AGAAACGGAAAGAGTGGGCTCAACGTATGAAATCGCTTGTTCGGAAAGGT
GGTGATCTAATCACTGTGATGTATCCGGTTGGAAAGGATCATTCTGAAGG
CGGGCCGCCTTTCGGAACAGATCCGAAAGCTTATGAACATTTGTTGGAGG
GTGACGGTGGATTTGAGAGGCGAGACGGACCGCGGCTCATCGATGACGAC
AAGTCTCATGTAGGCCGGGTAGGACGCACGTGGTGGTGTCGGTGGGAACG
AGTTTAA
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protein sequence of Gchil10031.t1

>Gchil10031.t1 ID=Gchil10031.t1|Name=Gchil10031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=219bp
MAHHVEEPTACPWESMWQEGVRPGEYFDKNSALPELVENIKNGCIQKGQA
AFIPGCGRGYDVEVLSRTGLFDKVIGMDISSTSVREANKYLKSIDPELPD
NFEVKQGDFFDNHLFFEPFCLVYDYTFFCAIPLEKRKEWAQRMKSLVRKG
GDLITVMYPVGKDHSEGGPPFGTDPKAYEHLLEGDGGFERRDGPRLIDDD
KSHVGRVGRTWWCRWERV*
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mRNA from alignment at tig00004442_pilon:469653..470309+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10031.t1 ID=Gchil10031.t1|Name=Gchil10031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00004442_pilon:469653..470309+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACATCATGTCGAGGAGCCGACGGCTTGTCCATGGGAATCGATGTG
GCAAGAGGGTGTCCGTCCTGGAGAATACTTCGACAAAAATTCTGCACTCC
CTGAGCTCGTGGAGAATATTAAAAATGGATGCATACAAAAAGGTCAGGCA
GCATTTATTCCTGGATGCGGCCGTGGCTATGATGTCGAAGTGTTGTCTCG
AACTGGGTTATTCGACAAAGTCATCGGAATGGATATTTCATCAACGAGCG
TTCGTGAGGCAAACAAATATCTGAAGTCGATCGACCCCGAGCTACCGGAT
AATTTCGAAGTAAAACAAGGAGATTTCTTCGACAACCACTTGTTTTTTGA
ACCATTCTGTCTCGTTTATGATTACACATTTTTCTGTGCCATCCCCTTGG
AGAAACGGAAAGAGTGGGCTCAACGTATGAAATCGCTTGTTCGGAAAGGT
GGTGATCTAATCACTGTGATGTATCCGGTTGGAAAGGATCATTCTGAAGG
CGGGCCGCCTTTCGGAACAGATCCGAAAGCTTATGAACATTTGTTGGAGG
GTGACGGTGGATTTGAGAGGCGAGACGGACCGCGGCTCATCGATGACGAC
AAGTCTCATGTAGGCCGGGTAGGACGCACGTGGTGGTGTCGGTGGGAACG
AGTTTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:469653..470309+

>Gchil10031.t1 ID=Gchil10031.t1|Name=Gchil10031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00004442_pilon:469653..470309+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACATCATGTCGAGGAGCCGACGGCTTGTCCATGGGAATCGATGTG
GCAAGAGGGTGTCCGTCCTGGAGAATACTTCGACAAAAATTCTGCACTCC
CTGAGCTCGTGGAGAATATTAAAAATGGATGCATACAAAAAGGTCAGGCA
GCATTTATTCCTGGATGCGGCCGTGGCTATGATGTCGAAGTGTTGTCTCG
AACTGGGTTATTCGACAAAGTCATCGGAATGGATATTTCATCAACGAGCG
TTCGTGAGGCAAACAAATATCTGAAGTCGATCGACCCCGAGCTACCGGAT
AATTTCGAAGTAAAACAAGGAGATTTCTTCGACAACCACTTGTTTTTTGA
ACCATTCTGTCTCGTTTATGATTACACATTTTTCTGTGCCATCCCCTTGG
AGAAACGGAAAGAGTGGGCTCAACGTATGAAATCGCTTGTTCGGAAAGGT
GGTGATCTAATCACTGTGATGTATCCGGTTGGAAAGGATCATTCTGAAGG
CGGGCCGCCTTTCGGAACAGATCCGAAAGCTTATGAACATTTGTTGGAGG
GTGACGGTGGATTTGAGAGGCGAGACGGACCGCGGCTCATCGATGACGAC
AAGTCTCATGTAGGCCGGGTAGGACGCACGTGGTGGTGTCGGTGGGAACG
AGTTTAA
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