Gchil10029.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10029.t1
Unique NameGchil10029.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:465129..465479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010669581.1
Max annot lvl35493|Streptophyta
Evalue3.21e-13
EggNOG OGs2CIQS@1|root,2S3S1@2759|Eukaryota,37W19@33090|Viridiplantae,3GK8P@35493|Streptophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10029Gchil10029Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 465129..465479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10029.t1Gchil10029.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 465129..465479 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10029.t1.stop1Gchil10029.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 465129..465131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10029.t1.CDS1Gchil10029.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 465129..465224 -
Gchil10029.t1.CDS2Gchil10029.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 465312..465479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10029.t1.exon1Gchil10029.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 465129..465224 -
Gchil10029.t1.exon2Gchil10029.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 465312..465479 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10029.t1.intron1Gchil10029.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 465225..465311 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10029.t1.start1Gchil10029.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 465477..465479 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10029.t1 ID=Gchil10029.t1|Name=Gchil10029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=88bp
MVGGMGVRKNVHIEEWASFRENCEHAFKFSRANWARLAVFGFAVPIGLYV
WITKEMLCEGHSEGLGPERFGYQRKYMGFPPQKRQEP*
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spliced messenger RNA

>Gchil10029.t1 ID=Gchil10029.t1|Name=Gchil10029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00004442_pilon:465129..465479- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGCGGAATGGGTGTTCGGAAGAATGTTCACATTGAAGAATGGGC
AAGTTTTCGGGAGAATTGTGAGCACGCCTTCAAATTCTCTCGCGCAAATT
GGGCACGGCTCGCCGTATTCGGATTCGCCGTCCCCATAGGGCTTTATGTT
TGGATCACGAAAGAAATGCTATGCGAGGGTCATTCTGAGGGACTTGGTCC
AGAACGCTTCGGTTATCAGCGTAAATATATGGGTTTCCCTCCACAGAAGA
GGCAGGAACCATAG
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protein sequence of Gchil10029.t1

>Gchil10029.t1 ID=Gchil10029.t1|Name=Gchil10029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=88bp
MVGGMGVRKNVHIEEWASFRENCEHAFKFSRANWARLAVFGFAVPIGLYV
WITKEMLCEGHSEGLGPERFGYQRKYMGFPPQKRQEP*
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mRNA from alignment at tig00004442_pilon:465129..465479-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10029.t1 ID=Gchil10029.t1|Name=Gchil10029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00004442_pilon:465129..465479- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGGCGGAATGGGTGTTCGGAAGAATGTTCACATTGAAGAATGGGC
AAGTTTTCGGGAGAATTGTGAGCACGCCTTCAAATTCTCTCGCGCAAATT
GGGCACGGCTCGCCGTATTCGGATTCGCCGTCCCCATAGGGCTTTATGTT
TGGATCACGAAAGAAATGGTAAGCAACTAGTCTTGCGTGTCTCTCTTTAC
ATAACCTGCCTCTGACGCATGCTTCTTTCTGGCATCCTCCCGTGTCGCTC
ATAAGCTATGCGAGGGTCATTCTGAGGGACTTGGTCCAGAACGCTTCGGT
TATCAGCGTAAATATATGGGTTTCCCTCCACAGAAGAGGCAGGAACCATA
G
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Coding sequence (CDS) from alignment at tig00004442_pilon:465129..465479-

>Gchil10029.t1 ID=Gchil10029.t1|Name=Gchil10029.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00004442_pilon:465129..465479- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGGCGGAATGGGTGTTCGGAAGAATGTTCACATTGAAGAATGGGC
AAGTTTTCGGGAGAATTGTGAGCACGCCTTCAAATTCTCTCGCGCAAATT
GGGCACGGCTCGCCGTATTCGGATTCGCCGTCCCCATAGGGCTTTATGTT
TGGATCACGAAAGAAATGCTATGCGAGGGTCATTCTGAGGGACTTGGTCC
AGAACGCTTCGGTTATCAGCGTAAATATATGGGTTTCCCTCCACAGAAGA
GGCAGGAACCATAG
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