Gchil10027.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10027.t1
Unique NameGchil10027.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:460660..461751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010527895.1
PFAMsDUF383,DUF384
Max annot lvl35493|Streptophyta
Evalue2.26e-09
EggNOG OGsKOG2973@1|root,KOG2973@2759|Eukaryota,37HH1@33090|Viridiplantae,3G7US@35493|Streptophyta,3HRSQ@3699|Brassicales
DescriptionDomain of unknown function (DUF383)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10027Gchil10027Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 460660..461751 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10027.t1.stop1Gchil10027.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 460660..460662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10027.t1.CDS1Gchil10027.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 460660..461751 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10027.t1.exon1Gchil10027.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 460660..461751 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10027.t1.start1Gchil10027.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 461749..461751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10027.t1Gchil10027.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 460660..461751 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10027.t1 ID=Gchil10027.t1|Name=Gchil10027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=364bp
MDKESLSEISQLLSGAVGPSTRTAACTALAACSAGGAGAKLRHIIGTTQV
GEEAVRRILVLCGDRHCSRIALSALVNMSEDAEAVRTMTNLGAVQQASEA
LLDPELQELSSLYAGLLSNLTRFPCGVDALVGKGLTGVEKDLTIDTLLKL
VTRIETIPNVLWMPNALTTPEGREALLFKYATSSPNNFSRSGQQPLTWLL
RLLPSSNEATRLAVASALRNCAMVEDCHEALLSEPETIGTCLTRLMSAQH
PVSPQNVRKAPQSVQNIAFNPMSATPEPLVEIRLILVEALLLLCKSSQGR
KVLWEKDAYAVLEVWKQAEHNEQVQTAVDSIIERVTIAEDNEGNIEENLE
SVNMAEAPKMASF*
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spliced messenger RNA

>Gchil10027.t1 ID=Gchil10027.t1|Name=Gchil10027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004442_pilon:460660..461751- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAGGAGTCGTTATCAGAAATCAGTCAACTACTCAGCGGTGCAGT
AGGCCCATCAACACGAACCGCTGCATGCACCGCATTGGCGGCTTGTTCTG
CCGGAGGGGCGGGAGCCAAACTTCGTCATATAATTGGTACGACCCAAGTT
GGCGAAGAAGCCGTTCGGCGCATACTTGTGCTCTGTGGAGATCGGCATTG
CTCTCGAATCGCTCTTTCCGCGCTAGTGAACATGTCGGAGGATGCAGAGG
CTGTTCGAACGATGACAAATCTAGGTGCCGTTCAACAGGCCTCGGAGGCT
CTGCTTGATCCTGAACTACAAGAATTATCTTCGCTTTATGCTGGACTTTT
GTCGAATCTTACTCGCTTTCCATGTGGTGTGGACGCACTCGTGGGGAAAG
GTCTAACAGGCGTTGAGAAGGATCTAACTATTGACACACTGCTCAAACTT
GTCACCCGGATAGAAACAATTCCAAACGTGTTGTGGATGCCAAATGCCCT
CACCACTCCAGAGGGAAGAGAAGCTCTTTTGTTTAAGTATGCTACAAGTT
CTCCGAACAATTTTAGTCGGTCAGGGCAGCAGCCCCTGACGTGGCTGCTA
CGACTCTTGCCGTCATCGAACGAGGCAACACGTCTTGCCGTGGCTTCTGC
ACTTCGAAACTGTGCAATGGTTGAAGATTGCCACGAAGCGCTTCTCAGTG
AGCCGGAAACGATCGGAACCTGTTTGACAAGGCTGATGTCCGCACAGCAT
CCAGTTTCTCCTCAGAATGTACGAAAAGCACCGCAGTCAGTGCAGAATAT
AGCATTCAATCCGATGTCAGCTACTCCAGAGCCTTTGGTGGAAATACGAC
TGATACTCGTCGAAGCCCTTCTCTTGCTTTGCAAGAGCTCGCAGGGACGA
AAAGTGTTATGGGAAAAAGATGCCTATGCCGTATTGGAGGTATGGAAACA
AGCAGAACACAACGAACAAGTTCAAACAGCAGTTGACAGCATCATCGAGA
GAGTTACAATAGCAGAAGATAACGAAGGAAACATCGAAGAAAATTTGGAA
TCAGTCAACATGGCAGAAGCACCGAAGATGGCCTCGTTTTGA
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protein sequence of Gchil10027.t1

>Gchil10027.t1 ID=Gchil10027.t1|Name=Gchil10027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=364bp
MDKESLSEISQLLSGAVGPSTRTAACTALAACSAGGAGAKLRHIIGTTQV
GEEAVRRILVLCGDRHCSRIALSALVNMSEDAEAVRTMTNLGAVQQASEA
LLDPELQELSSLYAGLLSNLTRFPCGVDALVGKGLTGVEKDLTIDTLLKL
VTRIETIPNVLWMPNALTTPEGREALLFKYATSSPNNFSRSGQQPLTWLL
RLLPSSNEATRLAVASALRNCAMVEDCHEALLSEPETIGTCLTRLMSAQH
PVSPQNVRKAPQSVQNIAFNPMSATPEPLVEIRLILVEALLLLCKSSQGR
KVLWEKDAYAVLEVWKQAEHNEQVQTAVDSIIERVTIAEDNEGNIEENLE
SVNMAEAPKMASF*
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mRNA from alignment at tig00004442_pilon:460660..461751-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10027.t1 ID=Gchil10027.t1|Name=Gchil10027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004442_pilon:460660..461751- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAGGAGTCGTTATCAGAAATCAGTCAACTACTCAGCGGTGCAGT
AGGCCCATCAACACGAACCGCTGCATGCACCGCATTGGCGGCTTGTTCTG
CCGGAGGGGCGGGAGCCAAACTTCGTCATATAATTGGTACGACCCAAGTT
GGCGAAGAAGCCGTTCGGCGCATACTTGTGCTCTGTGGAGATCGGCATTG
CTCTCGAATCGCTCTTTCCGCGCTAGTGAACATGTCGGAGGATGCAGAGG
CTGTTCGAACGATGACAAATCTAGGTGCCGTTCAACAGGCCTCGGAGGCT
CTGCTTGATCCTGAACTACAAGAATTATCTTCGCTTTATGCTGGACTTTT
GTCGAATCTTACTCGCTTTCCATGTGGTGTGGACGCACTCGTGGGGAAAG
GTCTAACAGGCGTTGAGAAGGATCTAACTATTGACACACTGCTCAAACTT
GTCACCCGGATAGAAACAATTCCAAACGTGTTGTGGATGCCAAATGCCCT
CACCACTCCAGAGGGAAGAGAAGCTCTTTTGTTTAAGTATGCTACAAGTT
CTCCGAACAATTTTAGTCGGTCAGGGCAGCAGCCCCTGACGTGGCTGCTA
CGACTCTTGCCGTCATCGAACGAGGCAACACGTCTTGCCGTGGCTTCTGC
ACTTCGAAACTGTGCAATGGTTGAAGATTGCCACGAAGCGCTTCTCAGTG
AGCCGGAAACGATCGGAACCTGTTTGACAAGGCTGATGTCCGCACAGCAT
CCAGTTTCTCCTCAGAATGTACGAAAAGCACCGCAGTCAGTGCAGAATAT
AGCATTCAATCCGATGTCAGCTACTCCAGAGCCTTTGGTGGAAATACGAC
TGATACTCGTCGAAGCCCTTCTCTTGCTTTGCAAGAGCTCGCAGGGACGA
AAAGTGTTATGGGAAAAAGATGCCTATGCCGTATTGGAGGTATGGAAACA
AGCAGAACACAACGAACAAGTTCAAACAGCAGTTGACAGCATCATCGAGA
GAGTTACAATAGCAGAAGATAACGAAGGAAACATCGAAGAAAATTTGGAA
TCAGTCAACATGGCAGAAGCACCGAAGATGGCCTCGTTTTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:460660..461751-

>Gchil10027.t1 ID=Gchil10027.t1|Name=Gchil10027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00004442_pilon:460660..461751- (Gracilaria chilensis NLEC103_M9 male)
ATGGACAAGGAGTCGTTATCAGAAATCAGTCAACTACTCAGCGGTGCAGT
AGGCCCATCAACACGAACCGCTGCATGCACCGCATTGGCGGCTTGTTCTG
CCGGAGGGGCGGGAGCCAAACTTCGTCATATAATTGGTACGACCCAAGTT
GGCGAAGAAGCCGTTCGGCGCATACTTGTGCTCTGTGGAGATCGGCATTG
CTCTCGAATCGCTCTTTCCGCGCTAGTGAACATGTCGGAGGATGCAGAGG
CTGTTCGAACGATGACAAATCTAGGTGCCGTTCAACAGGCCTCGGAGGCT
CTGCTTGATCCTGAACTACAAGAATTATCTTCGCTTTATGCTGGACTTTT
GTCGAATCTTACTCGCTTTCCATGTGGTGTGGACGCACTCGTGGGGAAAG
GTCTAACAGGCGTTGAGAAGGATCTAACTATTGACACACTGCTCAAACTT
GTCACCCGGATAGAAACAATTCCAAACGTGTTGTGGATGCCAAATGCCCT
CACCACTCCAGAGGGAAGAGAAGCTCTTTTGTTTAAGTATGCTACAAGTT
CTCCGAACAATTTTAGTCGGTCAGGGCAGCAGCCCCTGACGTGGCTGCTA
CGACTCTTGCCGTCATCGAACGAGGCAACACGTCTTGCCGTGGCTTCTGC
ACTTCGAAACTGTGCAATGGTTGAAGATTGCCACGAAGCGCTTCTCAGTG
AGCCGGAAACGATCGGAACCTGTTTGACAAGGCTGATGTCCGCACAGCAT
CCAGTTTCTCCTCAGAATGTACGAAAAGCACCGCAGTCAGTGCAGAATAT
AGCATTCAATCCGATGTCAGCTACTCCAGAGCCTTTGGTGGAAATACGAC
TGATACTCGTCGAAGCCCTTCTCTTGCTTTGCAAGAGCTCGCAGGGACGA
AAAGTGTTATGGGAAAAAGATGCCTATGCCGTATTGGAGGTATGGAAACA
AGCAGAACACAACGAACAAGTTCAAACAGCAGTTGACAGCATCATCGAGA
GAGTTACAATAGCAGAAGATAACGAAGGAAACATCGAAGAAAATTTGGAA
TCAGTCAACATGGCAGAAGCACCGAAGATGGCCTCGTTTTGA
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