Gchil10026.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10026.t1
Unique Name	Gchil10026.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	251

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:459236..459988 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CML173CT
Preferred name	MEAF6
PFAMs	NuA4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11344
GOs	GO:0000123,GO:0000228,GO:0000775,GO:0000776,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010646,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0023051,GO:0031248,GO:0031974,GO:0031981,GO:0032991,GO:0033100,GO:0033554,GO:0034641,GO:0035267,GO:0036211,GO:0036409,GO:0036410,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044154,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070775,GO:0070776,GO:0071704,GO:0071840,GO:0090304,GO:0098687,GO:1901360,GO:1901564,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902562,GO:1990234,GO:1990467,GO:1990468
Evalue	7.64e-10
EggNOG OGs	KOG3856@1\|root,KOG3856@2759\|Eukaryota
Description	histone H3-K14 acetylation
COG category	BDLTU
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10026	Gchil10026	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 459236..459988 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10026.t1.start1	Gchil10026.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 459236..459238 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10026.t1.CDS1	Gchil10026.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 459236..459988 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10026.t1.exon1	Gchil10026.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 459236..459988 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10026.t1.stop1	Gchil10026.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 459986..459988 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10026.t1	Gchil10026.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 459236..459988 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:459236..459988+
coding sequence from alignment at tig00004442_pilon:459236..459988+

mRNA sequence

>Gchil10026.t1 ID=Gchil10026.t1|Name=Gchil10026.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=251bp
MPSLTSSPSPSPPPPPPPPPQPTPPQSPPAMPRKNSHRPLAAKAPRGLAP
STPTAHSAPPSAPGTPAPAPPKAEPKKIPSTRSRPSVAGKTLIEKPRVGK
VASKALASKLSVKAEKAAEKAAERAAESAALAAERLALENVIEQSMAALQ
REVHVIERDISSMEEDYIKSTWAQGNVLRGWDGFGRRLDRSERAVTGNGS
GVATGAPKHRKSRLSDRIFSLSSSTSPFRIENPDVQIGKRGGVQKKKKKR
*

spliced messenger RNA

>Gchil10026.t1 ID=Gchil10026.t1|Name=Gchil10026.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00004442_pilon:459236..459988+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCGTTGACATCCTcgccgtcgccgtccccgccgccgccgccgcc
gccgccgccgcAGCCCACTCCGCCTCAATCGCCGCCTGCCATGCCGCGCA
AGAACTCTCACCGTCCGCTGGCAGCGAAGGCGCCGCGCGGATTGGCGCCG
TCCACGCCCACTGCGCACTCGGCCCCGCCCTCAGCTCCTGGCACTCCGGC
GCCCGCCCCGCCAAAGGCAGAGCCGAAGAAAATCCCTTCCACGAGGAGTC
GCCCCTCGGTGGCGGGCAAGACGCTCATCGAAAAGCCGCGTGTCGGAAAA
GTTGCTTCTAAGGCGCTTGCTTCTAAGCTTTCTGTCAAGGCCGAGAAGGC
GGCTGAGAAAGCTGCCGAAAGGGCTGCCGAATCTGCTGCACTCGCTGCCG
AGCGTTTGGCGTTGGAGAATGTTATTGAACAAAGCATGGCTGCCTTGCAG
CGAGAGGTGCACGTCATCGAGCGAGACATTTCTAGTATGGAGGAGGATTA
TATCAAGAGTACTTGGGCGCAGGGCAACGTGCTGCGCGGTTGGGACGGCT
TTGGACGCAGGCTTGATCGCTCCGAGAGGGCCGTCACTGGTAATGGCAGT
GGAGTAGCCACTGGTGCCCCCAAGCATCGCAAGTCAAGACTCAGCGATCG
TATTTTCAGTCTCAGCTCCTCTACTTCGCCTTTCAGAATTGAGAATCCCG
ACGTCCAAATTGGCAAACGGGGCGGCGTGCAAAAGAAGAAAAAGAAGAGA
TGA

protein sequence of Gchil10026.t1

>Gchil10026.t1 ID=Gchil10026.t1|Name=Gchil10026.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=251bp
MPSLTSSPSPSPPPPPPPPPQPTPPQSPPAMPRKNSHRPLAAKAPRGLAP
STPTAHSAPPSAPGTPAPAPPKAEPKKIPSTRSRPSVAGKTLIEKPRVGK
VASKALASKLSVKAEKAAEKAAERAAESAALAAERLALENVIEQSMAALQ
REVHVIERDISSMEEDYIKSTWAQGNVLRGWDGFGRRLDRSERAVTGNGS
GVATGAPKHRKSRLSDRIFSLSSSTSPFRIENPDVQIGKRGGVQKKKKKR
*

mRNA from alignment at tig00004442_pilon:459236..459988+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10026.t1 ID=Gchil10026.t1|Name=Gchil10026.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00004442_pilon:459236..459988+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCATCGTTGACATCCTcgccgtcgccgtccccgccgccgccgccgcc
gccgccgccgcAGCCCACTCCGCCTCAATCGCCGCCTGCCATGCCGCGCA
AGAACTCTCACCGTCCGCTGGCAGCGAAGGCGCCGCGCGGATTGGCGCCG
TCCACGCCCACTGCGCACTCGGCCCCGCCCTCAGCTCCTGGCACTCCGGC
GCCCGCCCCGCCAAAGGCAGAGCCGAAGAAAATCCCTTCCACGAGGAGTC
GCCCCTCGGTGGCGGGCAAGACGCTCATCGAAAAGCCGCGTGTCGGAAAA
GTTGCTTCTAAGGCGCTTGCTTCTAAGCTTTCTGTCAAGGCCGAGAAGGC
GGCTGAGAAAGCTGCCGAAAGGGCTGCCGAATCTGCTGCACTCGCTGCCG
AGCGTTTGGCGTTGGAGAATGTTATTGAACAAAGCATGGCTGCCTTGCAG
CGAGAGGTGCACGTCATCGAGCGAGACATTTCTAGTATGGAGGAGGATTA
TATCAAGAGTACTTGGGCGCAGGGCAACGTGCTGCGCGGTTGGGACGGCT
TTGGACGCAGGCTTGATCGCTCCGAGAGGGCCGTCACTGGTAATGGCAGT
GGAGTAGCCACTGGTGCCCCCAAGCATCGCAAGTCAAGACTCAGCGATCG
TATTTTCAGTCTCAGCTCCTCTACTTCGCCTTTCAGAATTGAGAATCCCG
ACGTCCAAATTGGCAAACGGGGCGGCGTGCAAAAGAAGAAAAAGAAGAGA
TGA

Coding sequence (CDS) from alignment at tig00004442_pilon:459236..459988+

>Gchil10026.t1 ID=Gchil10026.t1|Name=Gchil10026.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00004442_pilon:459236..459988+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCATCGTTGACATCCTcgccgtcgccgtccccgccgccgccgccgcc
gccgccgccgcAGCCCACTCCGCCTCAATCGCCGCCTGCCATGCCGCGCA
AGAACTCTCACCGTCCGCTGGCAGCGAAGGCGCCGCGCGGATTGGCGCCG
TCCACGCCCACTGCGCACTCGGCCCCGCCCTCAGCTCCTGGCACTCCGGC
GCCCGCCCCGCCAAAGGCAGAGCCGAAGAAAATCCCTTCCACGAGGAGTC
GCCCCTCGGTGGCGGGCAAGACGCTCATCGAAAAGCCGCGTGTCGGAAAA
GTTGCTTCTAAGGCGCTTGCTTCTAAGCTTTCTGTCAAGGCCGAGAAGGC
GGCTGAGAAAGCTGCCGAAAGGGCTGCCGAATCTGCTGCACTCGCTGCCG
AGCGTTTGGCGTTGGAGAATGTTATTGAACAAAGCATGGCTGCCTTGCAG
CGAGAGGTGCACGTCATCGAGCGAGACATTTCTAGTATGGAGGAGGATTA
TATCAAGAGTACTTGGGCGCAGGGCAACGTGCTGCGCGGTTGGGACGGCT
TTGGACGCAGGCTTGATCGCTCCGAGAGGGCCGTCACTGGTAATGGCAGT
GGAGTAGCCACTGGTGCCCCCAAGCATCGCAAGTCAAGACTCAGCGATCG
TATTTTCAGTCTCAGCTCCTCTACTTCGCCTTTCAGAATTGAGAATCCCG
ACGTCCAAATTGGCAAACGGGGCGGCGTGCAAAAGAAGAAAAAGAAGAGA
TGA