Gchil10025.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10025.t1
Unique NameGchil10025.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:458247..458852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708677.1
PFAMsRubredoxin
Max annot lvl2759|Eukaryota
Evalue1.54e-42
EggNOG OGsCOG1773@1|root,2S3MR@2759|Eukaryota
DescriptionRubredoxin
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10025Gchil10025Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 458247..458852 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10025.t1.stop1Gchil10025.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 458247..458249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10025.t1.CDS1Gchil10025.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 458247..458852 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10025.t1.exon1Gchil10025.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 458247..458852 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10025.t1.start1Gchil10025.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 458850..458852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10025.t1Gchil10025.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 458247..458852 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10025.t1 ID=Gchil10025.t1|Name=Gchil10025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=202bp
MPFVSSVPLQLGACEARSTCARARRSRFSRRPVLMNGDDKESVPLDAFNN
MRSKPQAAAEADVAQSAQPVTENPPDQQSDDRSEKQKEIDRLRAAEKFIT
IDEGRYECPACSYVYDPKQGEKQAAIAAGTPFEDVPNTYFCPVCRTPKRM
FVAKKKVIAGFADNQTYGLGTNSMTGGQKNLLIFGGLLLAFLLLLSGYAL
N*
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spliced messenger RNA

>Gchil10025.t1 ID=Gchil10025.t1|Name=Gchil10025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00004442_pilon:458247..458852- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTCGTTAGCAGCGTACCGCTTCAGCTGGGCGCCTGCGAGGCGCG
TTCGACATGCGCGCGAGCGAGGCGGTCGCGTTTCTCCAGGCGCCCAGTGT
TGATGAATGGCGACGATAAAGAATCCGTGCCGCTGGACGCGTTCAATAAC
ATGCGCTCAAAGCCTCAAGCTGCCGCCGAAGCAGACGTGGCGCAAAGTGC
GCAACCGGTGACGGAAAATCCGCCTGACCAGCAGTCTGATGACAGAAGCG
AAAAGCAAAAGGAGATTGATCGTCTCAGAGCCGCCGAAAAGTTCATTACC
ATCGATGAAGGGCGCTATGAGTGCCCCGCCTGTTCCTACGTGTATGATCC
GAAACAAGGAGAAAAGCAAGCTGCAATTGCAGCCGGCACTCCATTTGAAG
ACGTGCCAAACACCTATTTCTGTCCTGTGTGTCGCACACCCAAGAGAATG
TTTGTCGCAAAGAAGAAGGTTATAGCCGGCTTTGCAGATAACCAGACGTA
CGGTTTAGGCACCAATAGTATGACGGGCGGGCAGAAGAATCTTCTCATTT
TCGGCGGCTTGCTGCTGGCATTCCTGTTGCTGCTTTCAGGCTATGCCTTG
AACTAG
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protein sequence of Gchil10025.t1

>Gchil10025.t1 ID=Gchil10025.t1|Name=Gchil10025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=202bp
MPFVSSVPLQLGACEARSTCARARRSRFSRRPVLMNGDDKESVPLDAFNN
MRSKPQAAAEADVAQSAQPVTENPPDQQSDDRSEKQKEIDRLRAAEKFIT
IDEGRYECPACSYVYDPKQGEKQAAIAAGTPFEDVPNTYFCPVCRTPKRM
FVAKKKVIAGFADNQTYGLGTNSMTGGQKNLLIFGGLLLAFLLLLSGYAL
N*
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mRNA from alignment at tig00004442_pilon:458247..458852-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10025.t1 ID=Gchil10025.t1|Name=Gchil10025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00004442_pilon:458247..458852- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTTCGTTAGCAGCGTACCGCTTCAGCTGGGCGCCTGCGAGGCGCG
TTCGACATGCGCGCGAGCGAGGCGGTCGCGTTTCTCCAGGCGCCCAGTGT
TGATGAATGGCGACGATAAAGAATCCGTGCCGCTGGACGCGTTCAATAAC
ATGCGCTCAAAGCCTCAAGCTGCCGCCGAAGCAGACGTGGCGCAAAGTGC
GCAACCGGTGACGGAAAATCCGCCTGACCAGCAGTCTGATGACAGAAGCG
AAAAGCAAAAGGAGATTGATCGTCTCAGAGCCGCCGAAAAGTTCATTACC
ATCGATGAAGGGCGCTATGAGTGCCCCGCCTGTTCCTACGTGTATGATCC
GAAACAAGGAGAAAAGCAAGCTGCAATTGCAGCCGGCACTCCATTTGAAG
ACGTGCCAAACACCTATTTCTGTCCTGTGTGTCGCACACCCAAGAGAATG
TTTGTCGCAAAGAAGAAGGTTATAGCCGGCTTTGCAGATAACCAGACGTA
CGGTTTAGGCACCAATAGTATGACGGGCGGGCAGAAGAATCTTCTCATTT
TCGGCGGCTTGCTGCTGGCATTCCTGTTGCTGCTTTCAGGCTATGCCTTG
AACTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:458247..458852-

>Gchil10025.t1 ID=Gchil10025.t1|Name=Gchil10025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00004442_pilon:458247..458852- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTTCGTTAGCAGCGTACCGCTTCAGCTGGGCGCCTGCGAGGCGCG
TTCGACATGCGCGCGAGCGAGGCGGTCGCGTTTCTCCAGGCGCCCAGTGT
TGATGAATGGCGACGATAAAGAATCCGTGCCGCTGGACGCGTTCAATAAC
ATGCGCTCAAAGCCTCAAGCTGCCGCCGAAGCAGACGTGGCGCAAAGTGC
GCAACCGGTGACGGAAAATCCGCCTGACCAGCAGTCTGATGACAGAAGCG
AAAAGCAAAAGGAGATTGATCGTCTCAGAGCCGCCGAAAAGTTCATTACC
ATCGATGAAGGGCGCTATGAGTGCCCCGCCTGTTCCTACGTGTATGATCC
GAAACAAGGAGAAAAGCAAGCTGCAATTGCAGCCGGCACTCCATTTGAAG
ACGTGCCAAACACCTATTTCTGTCCTGTGTGTCGCACACCCAAGAGAATG
TTTGTCGCAAAGAAGAAGGTTATAGCCGGCTTTGCAGATAACCAGACGTA
CGGTTTAGGCACCAATAGTATGACGGGCGGGCAGAAGAATCTTCTCATTT
TCGGCGGCTTGCTGCTGGCATTCCTGTTGCTGCTTTCAGGCTATGCCTTG
AACTAG
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