Gcaud10045.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10045.t1
Unique Name	Gcaud10045.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_369_length_28483_cov_4.246936	contig	NODE_369_length_28483_cov_4.246936:2977..4110 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705365.1
Preferred name	METAP1
PFAMs	Peptidase_M24,zf-C6H2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01265
GOs	GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008277,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016787,GO:0018193,GO:0018206,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031323,GO:0031326,GO:0031365,GO:0032101,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:2000112
Evalue	1.33e-156
EggNOG OGs	COG0024@1\|root,KOG2738@2759\|Eukaryota
EC	3.4.11.18
Description	metalloexopeptidase activity
COG category	E
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10045	Gcaud10045	Gracilaria caudata M_176_S67 male	gene	NODE_369_length_28483_cov_4.246936 2977..4110 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10045.t1.stop1	Gcaud10045.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_369_length_28483_cov_4.246936 2977..2979 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10045.t1.CDS1	Gcaud10045.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_369_length_28483_cov_4.246936 2977..4110 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10045.t1.exon1	Gcaud10045.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_369_length_28483_cov_4.246936 2977..4110 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10045.t1.start1	Gcaud10045.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_369_length_28483_cov_4.246936 4108..4110 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10045.t1	Gcaud10045.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_369_length_28483_cov_4.246936 2977..4110 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_369_length_28483_cov_4.246936:2977..4110-
coding sequence from alignment at NODE_369_length_28483_cov_4.246936:2977..4110-

mRNA sequence

>Gcaud10045.t1 ID=Gcaud10045.t1|Name=Gcaud10045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=378bp
MLCASQHCEKEARLRCPTCVKLEIDLVSKSFFCSQECFRATWNSHKQIHK
GSALPRGMDPSAKRRRAAFAAYPYTGELRAAELLMPMRQVPPSIRKPDYA
EEGVPRAEERYNRTSTKFCILDEKGIAAMRKVCRLAREVLDIAVEAADVG
VTTEQIDQIVHEACIERESYPSPLNYYGFPKACCTSVNEVICHGIPDKRP
LQDGDILNIDITLYHGGYHGDLNETICIGDVSHQDKKLIQSAHDSMWAAI
KRIKPGVLFREFGAYIEKVAKANGHSVVRSYCGHGIGEQFHTAPNVPHYK
KNRAVGMCKSGMCFTIEPMINAGAWRDDTWPDNWTAVTADGSKSAQFEHT
VLVTDDGFEVLTARLSDGPKFWWEGGS*

spliced messenger RNA

>Gcaud10045.t1 ID=Gcaud10045.t1|Name=Gcaud10045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:2977..4110- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCGCGTCTCAACACTGTGAGAAGGAGGCCCGTCTTCGCTGTCC
CACCTGCGTCAAGCTCGAGATAGATCTTGTCTCCAAGAGCTTTTTCTGTT
CACAAGAGTGTTTCCGAGCGACATGGAATTCTCACAAGCAGATACACAAA
GGCTCCGCGCTCCCTCGTGGCATGGACCCCTCCGCAAAGCGCCGTCGTGC
CGCATTCGCTGCATACCCGTACACGGGCGAGTTAAGAGCGGCCGAGCTAC
TCATGCCAATGCGACAGGTGCCCCCGTCCATCCGAAAGCCGGACTACGCA
GAAGAAGGCGTGCCGCGCGCCGAGGAAAGATATAACCGCACCAGTACCAA
GTTTTGTATCCTGGACGAAAAGGGTATTGCCGCAATGCGAAAGGTGTGTC
GACTCGCGAGAGAGGTGCTTGATATCGCCGTCGAAGCCGCAGACGTGGGC
GTTACCACCGAGCAAATCGACCAAATCGTGCATGAAGCTTGCATCGAGAG
AGAGTCGTATCCCAGCCCTCTAAACTACTACGGCTTTCCAAAGGCGTGCT
GCACCAGCGTGAACGAAGTCATCTGTCATGGAATTCCAGACAAGCGACCG
CTTCAAGATGGTGACATTCTAAACATTGATATTACGCTGTACCATGGCGG
CTATCACGGCGACCTAAACGAGACAATATGCATTGGCGACGTCTCCCACC
AAGACAAAAAACTCATACAAAGTGCCCACGACTCCATGTGGGCCGCCATT
AAACGAATTAAGCCAGGCGTTCTATTTCGTGAGTTCGGTGCTTATATTGA
GAAAGTGGCAAAAGCAAACGGTCATTCAGTCGTTCGTAGTTACTGCGGAC
ATGGCATTGGCGAGCAATTTCACACCGCGCCAAACGTGCCTCATTACAAG
AAAAATAGGGCTGTCGGCATGTGTAAGTCTGGAATGTGTTTCACTATCGA
GCCAATGATCAACGCCGGTGCTTGGCGAGACGATACTTGGCCTGATAACT
GGACCGCCGTTACGGCCGATGGAAGCAAGTCGGCGCAGTTCGAACACACT
GTGCTTGTAACGGACGATGGCTTCGAGGTTCTCACCGCCCGTCTGTCGGA
CGGACCAAAGTTCTGGTGGGAAGGGGGCAGCTGA

protein sequence of Gcaud10045.t1

>Gcaud10045.t1 ID=Gcaud10045.t1|Name=Gcaud10045.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=378bp
MLCASQHCEKEARLRCPTCVKLEIDLVSKSFFCSQECFRATWNSHKQIHK
GSALPRGMDPSAKRRRAAFAAYPYTGELRAAELLMPMRQVPPSIRKPDYA
EEGVPRAEERYNRTSTKFCILDEKGIAAMRKVCRLAREVLDIAVEAADVG
VTTEQIDQIVHEACIERESYPSPLNYYGFPKACCTSVNEVICHGIPDKRP
LQDGDILNIDITLYHGGYHGDLNETICIGDVSHQDKKLIQSAHDSMWAAI
KRIKPGVLFREFGAYIEKVAKANGHSVVRSYCGHGIGEQFHTAPNVPHYK
KNRAVGMCKSGMCFTIEPMINAGAWRDDTWPDNWTAVTADGSKSAQFEHT
VLVTDDGFEVLTARLSDGPKFWWEGGS*

mRNA from alignment at NODE_369_length_28483_cov_4.246936:2977..4110-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10045.t1 ID=Gcaud10045.t1|Name=Gcaud10045.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:2977..4110- (Gracilaria caudata M_176_S67 male)
ATGCTGTGCGCGTCTCAACACTGTGAGAAGGAGGCCCGTCTTCGCTGTCC
CACCTGCGTCAAGCTCGAGATAGATCTTGTCTCCAAGAGCTTTTTCTGTT
CACAAGAGTGTTTCCGAGCGACATGGAATTCTCACAAGCAGATACACAAA
GGCTCCGCGCTCCCTCGTGGCATGGACCCCTCCGCAAAGCGCCGTCGTGC
CGCATTCGCTGCATACCCGTACACGGGCGAGTTAAGAGCGGCCGAGCTAC
TCATGCCAATGCGACAGGTGCCCCCGTCCATCCGAAAGCCGGACTACGCA
GAAGAAGGCGTGCCGCGCGCCGAGGAAAGATATAACCGCACCAGTACCAA
GTTTTGTATCCTGGACGAAAAGGGTATTGCCGCAATGCGAAAGGTGTGTC
GACTCGCGAGAGAGGTGCTTGATATCGCCGTCGAAGCCGCAGACGTGGGC
GTTACCACCGAGCAAATCGACCAAATCGTGCATGAAGCTTGCATCGAGAG
AGAGTCGTATCCCAGCCCTCTAAACTACTACGGCTTTCCAAAGGCGTGCT
GCACCAGCGTGAACGAAGTCATCTGTCATGGAATTCCAGACAAGCGACCG
CTTCAAGATGGTGACATTCTAAACATTGATATTACGCTGTACCATGGCGG
CTATCACGGCGACCTAAACGAGACAATATGCATTGGCGACGTCTCCCACC
AAGACAAAAAACTCATACAAAGTGCCCACGACTCCATGTGGGCCGCCATT
AAACGAATTAAGCCAGGCGTTCTATTTCGTGAGTTCGGTGCTTATATTGA
GAAAGTGGCAAAAGCAAACGGTCATTCAGTCGTTCGTAGTTACTGCGGAC
ATGGCATTGGCGAGCAATTTCACACCGCGCCAAACGTGCCTCATTACAAG
AAAAATAGGGCTGTCGGCATGTGTAAGTCTGGAATGTGTTTCACTATCGA
GCCAATGATCAACGCCGGTGCTTGGCGAGACGATACTTGGCCTGATAACT
GGACCGCCGTTACGGCCGATGGAAGCAAGTCGGCGCAGTTCGAACACACT
GTGCTTGTAACGGACGATGGCTTCGAGGTTCTCACCGCCCGTCTGTCGGA
CGGACCAAAGTTCTGGTGGGAAGGGGGCAGCTGA

Coding sequence (CDS) from alignment at NODE_369_length_28483_cov_4.246936:2977..4110-

>Gcaud10045.t1 ID=Gcaud10045.t1|Name=Gcaud10045.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1134bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:2977..4110- (Gracilaria caudata M_176_S67 male)
ATGCTGTGCGCGTCTCAACACTGTGAGAAGGAGGCCCGTCTTCGCTGTCC
CACCTGCGTCAAGCTCGAGATAGATCTTGTCTCCAAGAGCTTTTTCTGTT
CACAAGAGTGTTTCCGAGCGACATGGAATTCTCACAAGCAGATACACAAA
GGCTCCGCGCTCCCTCGTGGCATGGACCCCTCCGCAAAGCGCCGTCGTGC
CGCATTCGCTGCATACCCGTACACGGGCGAGTTAAGAGCGGCCGAGCTAC
TCATGCCAATGCGACAGGTGCCCCCGTCCATCCGAAAGCCGGACTACGCA
GAAGAAGGCGTGCCGCGCGCCGAGGAAAGATATAACCGCACCAGTACCAA
GTTTTGTATCCTGGACGAAAAGGGTATTGCCGCAATGCGAAAGGTGTGTC
GACTCGCGAGAGAGGTGCTTGATATCGCCGTCGAAGCCGCAGACGTGGGC
GTTACCACCGAGCAAATCGACCAAATCGTGCATGAAGCTTGCATCGAGAG
AGAGTCGTATCCCAGCCCTCTAAACTACTACGGCTTTCCAAAGGCGTGCT
GCACCAGCGTGAACGAAGTCATCTGTCATGGAATTCCAGACAAGCGACCG
CTTCAAGATGGTGACATTCTAAACATTGATATTACGCTGTACCATGGCGG
CTATCACGGCGACCTAAACGAGACAATATGCATTGGCGACGTCTCCCACC
AAGACAAAAAACTCATACAAAGTGCCCACGACTCCATGTGGGCCGCCATT
AAACGAATTAAGCCAGGCGTTCTATTTCGTGAGTTCGGTGCTTATATTGA
GAAAGTGGCAAAAGCAAACGGTCATTCAGTCGTTCGTAGTTACTGCGGAC
ATGGCATTGGCGAGCAATTTCACACCGCGCCAAACGTGCCTCATTACAAG
AAAAATAGGGCTGTCGGCATGTGTAAGTCTGGAATGTGTTTCACTATCGA
GCCAATGATCAACGCCGGTGCTTGGCGAGACGATACTTGGCCTGATAACT
GGACCGCCGTTACGGCCGATGGAAGCAAGTCGGCGCAGTTCGAACACACT
GTGCTTGTAACGGACGATGGCTTCGAGGTTCTCACCGCCCGTCTGTCGGA
CGGACCAAAGTTCTGGTGGGAAGGGGGCAGCTGA