Gcaud2956.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2956.t1
Unique NameGcaud2956.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_368_length_28566_cov_4.066058contigNODE_368_length_28566_cov_4.066058:6771..7874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT313CT
Preferred nameOASTL1
PFAMsPALP
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00793,RC02814,RC02821,RC02874
KEGG koko:K01738,ko:K10357,ko:K13034,ko:K20553
KEGG ReactionR00897,R02846,R03524,R03601,R04859
KEGG Pathwayko00270,ko00460,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04016,map00270,map00460,map00920,map01100,map01110,map01120,map01130,map01200,map01230,map04016
KEGG ModuleM00021
GOsGO:0000003,GO:0000096,GO:0000097,GO:0000902,GO:0000904,GO:0001666,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005777,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0006950,GO:0006955,GO:0007275,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009069,GO:0009070,GO:0009314,GO:0009416,GO:0009507,GO:0009509,GO:0009526,GO:0009532,GO:0009536,GO:0009566,GO:0009567,GO:0009570,GO:0009579,GO:0009628,GO:0009636,GO:0009642,GO:0009643,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009826,GO:0009856,GO:0009860,GO:0009888,GO:0009932,GO:0009941,GO:0009987,GO:0010015,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010053,GO:0010054,GO:0010310,GO:0012505,GO:0015979,GO:0016020,GO:0016043,GO:0016049,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019222,GO:0019344,GO:0019499,GO:0019500,GO:0019752,GO:0019842,GO:0019899,GO:0019953,GO:0021700,GO:0022414,GO:0022622,GO:0030154,GO:0030170,GO:0031090,GO:0031323,GO:0031410,GO:0031967,GO:0031975,GO:0031977,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032989,GO:0034641,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042579,GO:0042592,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044436,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046394,GO:0046686,GO:0046872,GO:0046914,GO:0048037,GO:0048046,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048856,GO:0048868,GO:0048869,GO:0048878,GO:0050017,GO:0050662,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051193,GO:0051410,GO:0051704,GO:0055080,GO:0055081,GO:0060560,GO:0065007,GO:0065008,GO:0070279,GO:0070482,GO:0071695,GO:0071704,GO:0071840,GO:0071944,GO:0080144,GO:0080145,GO:0080146,GO:0080147,GO:0090322,GO:0090558,GO:0090627,GO:0097159,GO:0097708,GO:0098588,GO:0098754,GO:0098791,GO:0098805,GO:0099402,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1905392,GO:2000377
Evalue1.24e-163
EggNOG OGsCOG0031@1|root,KOG1252@2759|Eukaryota
EC2.5.1.47,4.4.1.9
Descriptioncysteine biosynthetic process from serine
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03029,ko04131,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2956Gcaud2956Gracilaria caudata M_176_S67 malegeneNODE_368_length_28566_cov_4.066058 6771..7874 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2956.t1.stop1Gcaud2956.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_368_length_28566_cov_4.066058 6771..6773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2956.t1.CDS1Gcaud2956.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_368_length_28566_cov_4.066058 6771..7874 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2956.t1.exon1Gcaud2956.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_368_length_28566_cov_4.066058 6771..7874 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2956.t1.start1Gcaud2956.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_368_length_28566_cov_4.066058 7872..7874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2956.t1Gcaud2956.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_368_length_28566_cov_4.066058 6771..7874 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2956.t1 ID=Gcaud2956.t1|Name=Gcaud2956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=368bp
MFAFTTPHVVPVRNAQARPACCPLQRRNALPVSTPRMVATNPAQETAANV
STDAAGLVGNTPIVLLKRIPEAEGCVANVYAKLESMNPCSSVKDRIGRGM
ILGAEAAGQITPGKTVLVEPTSGNTGIALAFIAAARGYKLILTMPDSMSM
ERRMVLRAFGADVVLTPAVKGMKGAVTKAEQICRDTPNSFMLQQFANPNN
PKAHYETTGPEIANALDCDVFVSGVGTGGTVTGAGRYLKEKNPNTYIVVV
EPVESPVLSGGKPGPHKIQGIGAGFVPAVLDTSIYDEVVQVPSSAAIDMA
RRLAVEEGLLCGISSGAAVIAATTVAKRPEFAGKNVVAIIPSFGERYLTS
ALFDKQREEAYEMKAED*
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spliced messenger RNA

>Gcaud2956.t1 ID=Gcaud2956.t1|Name=Gcaud2956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:6771..7874- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCTTCACCACACCACACGTTGTGCCAGTAAGAAATGCGCAAGC
ACGCCCCGCATGTTGCCCGCTTCAACGTCGCAATGCGCTGCCCGTCTCCA
CGCCTCGAATGGTAGCCACCAATCCAGCTCAAGAAACAGCCGCCAACGTT
TCAACCGACGCAGCAGGTTTGGTAGGAAATACGCCTATTGTATTGCTCAA
GCGCATTCCAGAAGCTGAAGGATGTGTTGCCAATGTGTACGCCAAATTAG
AGAGCATGAATCCGTGCTCATCTGTCAAGGATCGAATCGGCCGAGGAATG
ATTCTTGGTGCTGAAGCTGCTGGTCAGATAACTCCCGGCAAAACCGTTTT
GGTTGAGCCCACTTCTGGAAACACTGGGATTGCGCTTGCGTTTATTGCGG
CTGCTAGGGGGTATAAACTTATTCTTACAATGCCCGATTCTATGTCTATG
GAAAGGCGAATGGTTCTTCGGGCTTTTGGAGCTGATGTTGTACTCACTCC
CGCCGTCAAGGGTATGAAGGGTGCTGTGACAAAGGCCGAACAGATTTGCA
GGGACACGCCCAACTCGTTTATGTTGCAGCAGTTTGCAAATCCGAACAAC
CCCAAGGCACACTATGAAACCACCGGTCCGGAAATTGCCAACGCTCTTGA
CTGTGATGTTTTCGTGTCTGGTGTTGGCACTGGCGGTACAGTCACTGGTG
CTGGTCGTTATCTGAAGGAGAAAAATCCCAACACTTACATTGTGGTTGTA
GAGCCGGTCGAGAGCCCTGTGCTTTCAGGAGGAAAGCCAGGTCCTCACAA
GATCCAAGGAATTGGAGCTGGCTTTGTTCCGGCCGTGTTGGATACCAGCA
TCTATGATGAAGTGGTTCAAGTTCCTTCTTCGGCTGCCATTGACATGGCA
CGCAGATTGGCGGTGGAGGAAGGTTTGTTATGCGGAATTTCTTCGGGTGC
AGCTGTGATTGCCGCAACTACAGTTGCGAAGAGACCTGAGTTTGCTGGTA
AGAACGTGGTTGCCATCATTCCGTCGTTTGGTGAGCGATACTTGACTTCT
GCTTTGTTTGACAAACAGCGTGAGGAGGCATACGAGATGAAGGCGGAGGA
TTAA
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protein sequence of Gcaud2956.t1

>Gcaud2956.t1 ID=Gcaud2956.t1|Name=Gcaud2956.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MFAFTTPHVVPVRNAQARPACCPLQRRNALPVSTPRMVATNPAQETAANV
STDAAGLVGNTPIVLLKRIPEAEGCVANVYAKLESMNPCSSVKDRIGRGM
ILGAEAAGQITPGKTVLVEPTSGNTGIALAFIAAARGYKLILTMPDSMSM
ERRMVLRAFGADVVLTPAVKGMKGAVTKAEQICRDTPNSFMLQQFANPNN
PKAHYETTGPEIANALDCDVFVSGVGTGGTVTGAGRYLKEKNPNTYIVVV
EPVESPVLSGGKPGPHKIQGIGAGFVPAVLDTSIYDEVVQVPSSAAIDMA
RRLAVEEGLLCGISSGAAVIAATTVAKRPEFAGKNVVAIIPSFGERYLTS
ALFDKQREEAYEMKAED*
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mRNA from alignment at NODE_368_length_28566_cov_4.066058:6771..7874-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2956.t1 ID=Gcaud2956.t1|Name=Gcaud2956.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:6771..7874- (Gracilaria caudata M_176_S67 male)
ATGTTCGCCTTCACCACACCACACGTTGTGCCAGTAAGAAATGCGCAAGC
ACGCCCCGCATGTTGCCCGCTTCAACGTCGCAATGCGCTGCCCGTCTCCA
CGCCTCGAATGGTAGCCACCAATCCAGCTCAAGAAACAGCCGCCAACGTT
TCAACCGACGCAGCAGGTTTGGTAGGAAATACGCCTATTGTATTGCTCAA
GCGCATTCCAGAAGCTGAAGGATGTGTTGCCAATGTGTACGCCAAATTAG
AGAGCATGAATCCGTGCTCATCTGTCAAGGATCGAATCGGCCGAGGAATG
ATTCTTGGTGCTGAAGCTGCTGGTCAGATAACTCCCGGCAAAACCGTTTT
GGTTGAGCCCACTTCTGGAAACACTGGGATTGCGCTTGCGTTTATTGCGG
CTGCTAGGGGGTATAAACTTATTCTTACAATGCCCGATTCTATGTCTATG
GAAAGGCGAATGGTTCTTCGGGCTTTTGGAGCTGATGTTGTACTCACTCC
CGCCGTCAAGGGTATGAAGGGTGCTGTGACAAAGGCCGAACAGATTTGCA
GGGACACGCCCAACTCGTTTATGTTGCAGCAGTTTGCAAATCCGAACAAC
CCCAAGGCACACTATGAAACCACCGGTCCGGAAATTGCCAACGCTCTTGA
CTGTGATGTTTTCGTGTCTGGTGTTGGCACTGGCGGTACAGTCACTGGTG
CTGGTCGTTATCTGAAGGAGAAAAATCCCAACACTTACATTGTGGTTGTA
GAGCCGGTCGAGAGCCCTGTGCTTTCAGGAGGAAAGCCAGGTCCTCACAA
GATCCAAGGAATTGGAGCTGGCTTTGTTCCGGCCGTGTTGGATACCAGCA
TCTATGATGAAGTGGTTCAAGTTCCTTCTTCGGCTGCCATTGACATGGCA
CGCAGATTGGCGGTGGAGGAAGGTTTGTTATGCGGAATTTCTTCGGGTGC
AGCTGTGATTGCCGCAACTACAGTTGCGAAGAGACCTGAGTTTGCTGGTA
AGAACGTGGTTGCCATCATTCCGTCGTTTGGTGAGCGATACTTGACTTCT
GCTTTGTTTGACAAACAGCGTGAGGAGGCATACGAGATGAAGGCGGAGGA
TTAA
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Coding sequence (CDS) from alignment at NODE_368_length_28566_cov_4.066058:6771..7874-

>Gcaud2956.t1 ID=Gcaud2956.t1|Name=Gcaud2956.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1104bp|location=Sequence derived from alignment at NODE_368_length_28566_cov_4.066058:6771..7874- (Gracilaria caudata M_176_S67 male)
ATGTTCGCCTTCACCACACCACACGTTGTGCCAGTAAGAAATGCGCAAGC
ACGCCCCGCATGTTGCCCGCTTCAACGTCGCAATGCGCTGCCCGTCTCCA
CGCCTCGAATGGTAGCCACCAATCCAGCTCAAGAAACAGCCGCCAACGTT
TCAACCGACGCAGCAGGTTTGGTAGGAAATACGCCTATTGTATTGCTCAA
GCGCATTCCAGAAGCTGAAGGATGTGTTGCCAATGTGTACGCCAAATTAG
AGAGCATGAATCCGTGCTCATCTGTCAAGGATCGAATCGGCCGAGGAATG
ATTCTTGGTGCTGAAGCTGCTGGTCAGATAACTCCCGGCAAAACCGTTTT
GGTTGAGCCCACTTCTGGAAACACTGGGATTGCGCTTGCGTTTATTGCGG
CTGCTAGGGGGTATAAACTTATTCTTACAATGCCCGATTCTATGTCTATG
GAAAGGCGAATGGTTCTTCGGGCTTTTGGAGCTGATGTTGTACTCACTCC
CGCCGTCAAGGGTATGAAGGGTGCTGTGACAAAGGCCGAACAGATTTGCA
GGGACACGCCCAACTCGTTTATGTTGCAGCAGTTTGCAAATCCGAACAAC
CCCAAGGCACACTATGAAACCACCGGTCCGGAAATTGCCAACGCTCTTGA
CTGTGATGTTTTCGTGTCTGGTGTTGGCACTGGCGGTACAGTCACTGGTG
CTGGTCGTTATCTGAAGGAGAAAAATCCCAACACTTACATTGTGGTTGTA
GAGCCGGTCGAGAGCCCTGTGCTTTCAGGAGGAAAGCCAGGTCCTCACAA
GATCCAAGGAATTGGAGCTGGCTTTGTTCCGGCCGTGTTGGATACCAGCA
TCTATGATGAAGTGGTTCAAGTTCCTTCTTCGGCTGCCATTGACATGGCA
CGCAGATTGGCGGTGGAGGAAGGTTTGTTATGCGGAATTTCTTCGGGTGC
AGCTGTGATTGCCGCAACTACAGTTGCGAAGAGACCTGAGTTTGCTGGTA
AGAACGTGGTTGCCATCATTCCGTCGTTTGGTGAGCGATACTTGACTTCT
GCTTTGTTTGACAAACAGCGTGAGGAGGCATACGAGATGAAGGCGGAGGA
TTAA
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