Gcaud7417.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7417.t1
Unique NameGcaud7417.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length286
Homology
BLAST of Gcaud7417.t1 vs. uniprot
Match: A0A2V3J1L1_9FLOR (RuBisCo_chap_C domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1L1_9FLOR)

HSP 1 Score: 278 bits (710), Expect = 1.880e-90
Identity = 145/260 (55.77%), Postives = 184/260 (70.77%), Query Frame = 0
Query:   34 MVTPKHIRRSNEIKRLERQLEELRALREKLGNEKVANG--------SDSKPEPLVNEVEN-VPPTPDAQSSPQTPMTDLHIGKHNEGSRFLSISNVESDEYSPRILTIAGSVPELTTGQFQSVPSLSTNKRPDKGNVVITKLPRDYRGAIMALPGSDVLHECGDPVIVLANQNEVSATSLPIAEEDLVALIVDRDMTGRAFENNNFYVWDVQGHIRVGWTEEEPHSSQAKCVGQVVFGVMEIKSELRQKKSCWEEENETY 284
            MV PKH+RRSNEIKRL+RQLEELR LREKL  +K            +D  P PL +     V P  DA+      +    + KH+E SRFLS+ N++S EY+PRIL+IAG+VP LTT +F++   L  NKRP+KGNV+IT LP  + G IMALPGSDVLH C DP+++LA+  E+SA  LPI E++ VAL+V+R++T   F N +FY WDVQG I+VGW E EP  SQA CVG+VV+G++EIK ELR+ KSCWEEENETY
Sbjct:    1 MVAPKHVRRSNEIKRLQRQLEELRELREKLAADKETEAQAKADKSPTDGMPTPLSSSSRPAVAPKSDAR------VDKFLVRKHDEQSRFLSLMNIDSQEYAPRILSIAGTVPGLTTNEFKAKKPLLLNKRPEKGNVIITSLPEGFDGEIMALPGSDVLHACRDPIVILADVGEISAVELPITEDENVALLVERNVTRETFNNKSFYAWDVQGQIKVGWVESEPDPSQAICVGRVVYGMVEIKPELRKTKSCWEEENETY 254          
BLAST of Gcaud7417.t1 vs. uniprot
Match: R7QT97_CHOCR (RuBisCo_chap_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT97_CHOCR)

HSP 1 Score: 235 bits (600), Expect = 2.060e-73
Identity = 129/291 (44.33%), Postives = 184/291 (63.23%), Query Frame = 0
Query:    4 TAFVPFSSFAPRFRQSQRTDVAAEKPYVLQMVTPKHIRRSNEIKRLERQLEELRALREKLGNEKVANGSDSKPEPLVNE----------VENVPPTPDAQSSPQTPMTDLHIGKHNEGSRFLSISNVESDEYSPRILTIAGSVPELTTGQFQSVPSLSTNKRPDKGNVVITKLPRDYRGAIMALPGSDVLHECGDPVIVLANQNEVSATSLPIAEEDLVALIVDRDMTGRAFENNNFYVWDVQGHIRVGWTEEEPHSSQAKCVGQVVFGVMEIKSELRQKKSCWEEENETY 284
            TAFVPFS+FAP  R + R      +    +M+  ++++ S EIKRL+++LEELRA+RE++  EK      S P P              V+NV P+ +   S         +GKH EGSRFLS+S VE++E+ PRILT+AG VPELT  +F   P +  N+ P+ GN+ +T LP  Y+G I+A+ G +V+ +C DPV VL    E+SA  L I+++  +A++V+R+++   F+   FY W V G ++VGW +E P    AKC+GQVVFG++E K ELR+KKSCWEEENETY
Sbjct:    5 TAFVPFSTFAPGLRPASRAAPVCSRNQP-KMIARENVQGSEEIKRLQKKLEELRAMRERIAKEK------SVPPPQAXXXXXXXXXQPAVQNVTPSNNTNLS-------FALGKHGEGSRFLSMSAVEAEEHFPRILTVAGRVPELTVKEFMETPPVLQNRPPNAGNMFVTMLPPGYQGQIIAMQGLEVIAKCMDPVAVLIPAEELSAAQLSISDDADIAVVVERNVSKLDFDKTKFYAWAVGGRVKVGWVKEMPSPDNAKCLGQVVFGMLEEKEELRKKKSCWEEENETY 281          
BLAST of Gcaud7417.t1 vs. uniprot
Match: A0A2V3IG29_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG29_9FLOR)

HSP 1 Score: 120 bits (300), Expect = 3.750e-29
Identity = 80/202 (39.60%), Postives = 118/202 (58.42%), Query Frame = 0
Query:   47 KRLERQLEELRALREKLGNEKVANGSDSKPEPLVNEVENVPPTPDAQSSPQT--PMTDLHIG-----KHNEGSRFLSISNVESDEYSPRI------LTIAGSVPELTTGQFQSVPSLSTNKRPDKGNVVITKLPRDYRGAIMALPGSDVLHECGDPVIVLANQNEVSATSLPIAEEDLVALIVDRDMTGRAF---ENNNFYV 232
            K L+RQLEELR LREK   +K         +   +E+    PTP + SS     P +D  +      KH+E SRFLS+ N++S EY+PRI      L+I+G+V  LTT + ++   L  NKR +K NV+IT  P  +    +ALPGSDVL+   D +++LA+  E++A  LPI E ++VA +V+R++T + F   +  N YV
Sbjct:   10 KHLQRQLEELRELREKQAADKETEAQAKADKSPTDEM----PTPLSSSSRPALAPNSDARVDIFLVRKHDEQSRFLSLMNIDSQEYAPRIEYAPRILSISGTVLGLTTNERKAKKPLLLNKRQEKENVIITSPPEVFDSESIALPGSDVLYAFRDLIVILADVVEITAVELPITENEIVAFLVERNVTSKTFNPFDPKNSYV 207          
BLAST of Gcaud7417.t1 vs. uniprot
Match: A0A7S2FVK7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVK7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.430e-14
Identity = 51/181 (28.18%), Postives = 89/181 (49.17%), Query Frame = 0
Query:  105 IGKHNEGSRFLSISNVESDEYSPRILTIAGSVPELTTGQFQSVPSLSTNKRPDKGNVVITKLPRDYRGAIMALPGSDVLHECGDPVIVLANQNEVSATSLPIAEEDLVALIVDRDMTGRAFENNNFYVW-DVQGHIRVGWTEEEPHSSQAKCVGQVVFGVMEIKSELRQKKSCWEEENETY 284
            +G+H  GS+F+ ++ ++S+EY+PR + +AG +P LT  +F + P  +    P +     +       G I A PGS  +  C DPV ++ N   +  +     E ++V LI   D     F NN F+++ D  G   + W  E P   +   +G+++   +   S + +K S W EE + Y
Sbjct:   50 MGQHGTGSKFMPLTQLDSEEYAPRTVQVAGVLPGLTKEEFYA-PQSAPAAPPGQWQFDFSDPEGPQMGTI-AFPGSANVQACEDPVAIVTNSAHLHISLANNVEAEVVVLI---DRANTEFYNNKFFLFADAAGTTYLKWQSELPEGHEV--LGRIMLVQIPFLSTMGKKTSGWMEEADDY 223          
BLAST of Gcaud7417.t1 vs. uniprot
Match: A0A6H5JHR7_9PHAE (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.780e-9
Identity = 48/178 (26.97%), Postives = 88/178 (49.44%), Query Frame = 0
Query:  106 GKHNEGSRFLSISNVESDEYSPRILTIAGSVPELTTGQFQSVPSLSTNKRPDKGNVVIT-KLPRDYRGAIMALPGSDVLHECGDPVIVLANQNEVSATSLPIAEEDLVALIVDRDMTGRAFENNNFYVWDVQGH-IRVGWTEEEPHSSQAKCVGQVVFGVMEIKSELRQKKSCWEEEN 281
            G H   SRFL +  ++ + ++PRI+ +AG +PE+T     +V        P+ G        P   +   +A+PG + + +  +PV ++   ++++   +P  E+  + L++DR    R FE   F++WD     + V + E EP    A CVG+V   +      + +K S +EEE+
Sbjct:   60 GAHGMRSRFLPVDQMDDEVFAPRIVQVAGVLPEITVADIMAV---GFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNI-QMPNDEKAEMLLVIDR--ANREFEFGKFFLWDTPSDGLVVRYFEGEPTPGFA-CVGRVGIVLAPFLPSMAKKSSGFEEED 230          
BLAST of Gcaud7417.t1 vs. uniprot
Match: A0A3M9ZGZ8_9CYAN (RuBisCO accumulation factor 1 n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9ZGZ8_9CYAN)

HSP 1 Score: 64.3 bits (155), Expect = 4.100e-8
Identity = 47/149 (31.54%), Postives = 71/149 (47.65%), Query Frame = 0
Query:  100 MTDLHIGKHNEGSRFLSISNVESDEYSPRILTIAGSVPELTTGQFQSVPSLSTNKRPDKGNVVITKLPRDYRGAIMALPGSDVLHECGDPVIVLANQNEVSATSLPIAEEDLVALIVDRDMTGRAFENNNFYVWDVQGHIRVGWTEEEP 248
            +TD  I +     R L    +ES     RI+ + G +P LTT   Q+VP +       +G   I K      GA  ALPG  V+    DPV++LA   ++    L  +E + V L+VDR    R +   ++++ D  G I++ W EE P
Sbjct:  188 LTDFSISRSRSAPR-LPFYRLESASDQGRIIPVVGKLP-LTTADLQAVPIVEP-----EGRFHIVKFAGT--GAWSALPGWQVVLTAEDPVLLLAESEQLPGADLDDSESEEVLLLVDRAQ--RDWNPESYFIVDEAGQIQLDWFEEAP 325          
BLAST of Gcaud7417.t1 vs. uniprot
Match: A0A7S3LGB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGB5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.720e-7
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 0
Query:  107 KHNEGSRFLSISNVESDEYSPRILTIAGSVPELTTGQFQSVPSLSTNKRPDKGNVVIT-KLPRDYRGAIMALPGSDVLHECGDPVIVLANQNEV 199
            KH + + FL I  +E D ++PRI+ IAG  P L+   F +V S    + PD+G        P   +   +AL GS ++H+C DPV+++A    +
Sbjct:   50 KHGQDACFLPIKQLEQDYFAPRIVQIAGGYPGLSKADFMAVTS---EQAPDQGQWTYDFSDPDGPQLGTVALEGSQIVHDCEDPVVIIAEHPSI 140          
The following BLAST results are available for this feature:
BLAST of Gcaud7417.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J1L1_9FLOR1.880e-9055.77RuBisCo_chap_C domain-containing protein n=1 Tax=G... [more]
R7QT97_CHOCR2.060e-7344.33RuBisCo_chap_C domain-containing protein n=1 Tax=C... [more]
A0A2V3IG29_9FLOR3.750e-2939.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S2FVK7_9STRA8.430e-1428.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6H5JHR7_9PHAE1.780e-926.97RuBisCo_chap_C domain-containing protein n=1 Tax=E... [more]
A0A3M9ZGZ8_9CYAN4.100e-831.54RuBisCO accumulation factor 1 n=2 Tax=Pseudanabaen... [more]
A0A7S3LGB5_9STRA1.720e-734.04Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..102
IPR040858Rubisco accumulation factor 1, C-terminalPFAMPF18087RuBisCo_chap_Ccoord: 116..261
e-value: 1.6E-13
score: 50.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_10_length_87931_cov_4.732901contigNODE_10_length_87931_cov_4.732901:20762..21619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7417.t1Gcaud7417.t1Gracilaria caudata M_176_S67 malemRNANODE_10_length_87931_cov_4.732901 20762..21619 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7417.t1 ID=Gcaud7417.t1|Name=Gcaud7417.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=286bp
MERTAFVPFSSFAPRFRQSQRTDVAAEKPYVLQMVTPKHIRRSNEIKRLE
RQLEELRALREKLGNEKVANGSDSKPEPLVNEVENVPPTPDAQSSPQTPM
TDLHIGKHNEGSRFLSISNVESDEYSPRILTIAGSVPELTTGQFQSVPSL
STNKRPDKGNVVITKLPRDYRGAIMALPGSDVLHECGDPVIVLANQNEVS
ATSLPIAEEDLVALIVDRDMTGRAFENNNFYVWDVQGHIRVGWTEEEPHS
SQAKCVGQVVFGVMEIKSELRQKKSCWEEENETYM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040858Raf1_C