Gcaud7434.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7434.t1
Unique Name	Gcaud7434.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	263

Homology

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BLAST of Gcaud7434.t1 vs. uniprot
Match: A0A2V3J1A9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1A9_9FLOR)

HSP 1 Score: 449 bits (1154), Expect = 2.960e-158
Identity = 207/258 (80.23%), Postives = 233/258 (90.31%), Query Frame = 0

Query:    7 MLVIFAL--LAASVTGQECLFNETMCSCSFGSTQGACYERTGTASDGTELCSKRNCDAGWTCDCVGDFFCTQADIDVFTLIDLNDFELTSNVPCEITTQRTITSAGFQLGSFHPQFSDTGLLAQDCQLFAWWLDGVLQNNFNEPTTVTTANLQTVRDSLSDWNNLPLRSGSVIGFRWRNAPYSCYNSISQLNINGTSLDTTDSSAVTHRFSNIFEDDWFSPDFVEGSNWRSPATTDFSDTYGVLNTEVTNTYWRIKVL 262
            +LV+ AL   + SVT QECL+N+TMC+C+FGS++G+CYERT TASDGTELCSKR CDAGWTCDC GDFFCTQA++DV+TLID NDF LTSNVPC+ITTQRTITSAGFQLG FHPQ SDTGLLAQ CQLFAWWLDG LQN F++PTTVT  NLQTV++SLSDWNNLPLRSGSVIGFRW++APYSCYNSIS+LNINGT +DTTDSS VTHR+SN+FE DWFSPDFVEGSNW  PATTDFSDT+G  NTE+TNTYWRIKVL
Sbjct:    5 LLVVIALGLFSVSVTAQECLYNDTMCACAFGSSEGSCYERTSTASDGTELCSKRTCDAGWTCDCSGDFFCTQANVDVYTLIDFNDFGLTSNVPCQITTQRTITSAGFQLGFFHPQISDTGLLAQSCQLFAWWLDGELQNVFSDPTTVTGGNLQTVKNSLSDWNNLPLRSGSVIGFRWKDAPYSCYNSISELNINGTIVDTTDSSVVTHRYSNVFETDWFSPDFVEGSNWLPPATTDFSDTFGEQNTEITNTYWRIKVL 262

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BLAST of Gcaud7434.t1 vs. uniprot
Match: R7Q5X4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5X4_CHOCR)

HSP 1 Score: 130 bits (327), Expect = 8.990e-33
Identity = 84/236 (35.59%), Postives = 125/236 (52.97%), Query Frame = 0

Query:   22 ECLFNETMCSCSFGSTQ-GACYERTGTASDGTELCSKRNCDAGWTCDCVGDFFCTQADIDVFTLIDLNDFELTSN-----------VPCEITTQRTITSAG-FQLGSFHPQFSDTGLLAQDCQLFAWWLDG-VLQNNFNEPTTVTTANLQTVRDSLSDWNNLPLRSGSVIGFRWRNAPYSCYNSISQLNINGTSLDTTDSSAVTHRFSNIFEDDWFSPD--FVEGSNWRSPATTDF 241
            EC++ +  CSC  GS + G C +   + SD   +C  R C +GWTC C G     + D+   T I       TS            +PC   T+ +  S G   LGSF P++S  GLL  +C+  AWW+DG ++Q+  NE   V+  N+  + ++ ++    PLR GSVI FR++NA Y C+NS + + +NGT LDT + + V  RFS   + +WF+PD   V   +  + A TDF
Sbjct:   26 ECMYGDDQCSCKMGSGESGVCLDLI-SGSDNDGMCKSRYCKSGWTCACQG-----RTDLCNMTEIRARIPGGTSGSDPIRQAVGEMIPCHEETRMSAASRGKLILGSFLPKYSRKGLLNGNCKHLAWWVDGKMIQSYGNEQ--VSADNVDEILNARANNTLFPLRPGSVIAFRFKNASYHCFNSFATVLVNGTELDTNNPT-VKVRFSRAHKSNWFAPDANIVYAEDESTAAVTDF 252

The following BLAST results are available for this feature:

BLAST of Gcaud7434.t1 vs. uniprot

BLAST of Gcaud7434.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J1A9_9FLOR	2.960e-158	80.23	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7Q5X4_CHOCR	8.990e-33	35.59	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..262

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_10_length_87931_cov_4.732901	contig	NODE_10_length_87931_cov_4.732901:65304..66286 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7434.t1	Gcaud7434.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_10_length_87931_cov_4.732901 65304..66286 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7434.t1 ID=Gcaud7434.t1|Name=Gcaud7434.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=263bp
MNNMRTMLVIFALLAASVTGQECLFNETMCSCSFGSTQGACYERTGTASD
GTELCSKRNCDAGWTCDCVGDFFCTQADIDVFTLIDLNDFELTSNVPCEI
TTQRTITSAGFQLGSFHPQFSDTGLLAQDCQLFAWWLDGVLQNNFNEPTT
VTTANLQTVRDSLSDWNNLPLRSGSVIGFRWRNAPYSCYNSISQLNINGT
SLDTTDSSAVTHRFSNIFEDDWFSPDFVEGSNWRSPATTDFSDTYGVLNT
EVTNTYWRIKVL*