Gcaud7857.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7857.t1
Unique NameGcaud7857.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_354_length_28917_cov_4.522861contigNODE_354_length_28917_cov_4.522861:4727..5775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX35047
Preferred namePSMA5
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K02729,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03050,ko04142,ko04722,ko04979,map03050,map04142,map04722,map04979
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003735,GO:0003824,GO:0004518,GO:0004540,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0012505,GO:0016020,GO:0016070,GO:0016192,GO:0016579,GO:0016787,GO:0016788,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030141,GO:0030163,GO:0031090,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034641,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042221,GO:0042788,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046483,GO:0046686,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0140098,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369,GO:1990904
Evalue1.71e-109
EggNOG OGsCOG0638@1|root,KOG0176@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7857Gcaud7857Gracilaria caudata M_176_S67 malegeneNODE_354_length_28917_cov_4.522861 4727..5775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7857.t1Gcaud7857.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_354_length_28917_cov_4.522861 4727..5775 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7857.t1.stop1Gcaud7857.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_354_length_28917_cov_4.522861 4727..4729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7857.t1.CDS1Gcaud7857.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_354_length_28917_cov_4.522861 4727..5245 -
Gcaud7857.t1.CDS2Gcaud7857.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_354_length_28917_cov_4.522861 5310..5385 -
Gcaud7857.t1.CDS3Gcaud7857.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_354_length_28917_cov_4.522861 5458..5521 -
Gcaud7857.t1.CDS4Gcaud7857.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_354_length_28917_cov_4.522861 5601..5775 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7857.t1.exon1Gcaud7857.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_354_length_28917_cov_4.522861 4727..5245 -
Gcaud7857.t1.exon2Gcaud7857.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_354_length_28917_cov_4.522861 5310..5385 -
Gcaud7857.t1.exon3Gcaud7857.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_354_length_28917_cov_4.522861 5458..5521 -
Gcaud7857.t1.exon4Gcaud7857.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_354_length_28917_cov_4.522861 5601..5775 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7857.t1.intron1Gcaud7857.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_354_length_28917_cov_4.522861 5246..5309 -
Gcaud7857.t1.intron2Gcaud7857.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_354_length_28917_cov_4.522861 5386..5457 -
Gcaud7857.t1.intron3Gcaud7857.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_354_length_28917_cov_4.522861 5522..5600 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7857.t1.start1Gcaud7857.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_354_length_28917_cov_4.522861 5773..5775 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7857.t1 ID=Gcaud7857.t1|Name=Gcaud7857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=278bp
MDFRSRLERGMRLIAMWSISCCREQGSTSRPLQSIALHTVLQSCSSADRR
TRLFFCNLVEYAIEAIKLGSTAVGIQTSEGVVIAVEKRLNSPLLVPTSVE
KIMEIDRHIGCAMSGLTADARTLIDHARVETQQHRFVYDEPMTPEACTQA
LCDLALRFGEDGEDHDTMSRPFGVALLIAGVDKDGPKLFHTDPSGTYVRW
KAKAIGAGSEGAQTALQESYSSSMTLQEAETLALRTLKQVMEEKLDGTNV
EVAAVTKESGLFRIYSPEELKQCISRL*
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spliced messenger RNA

>Gcaud7857.t1 ID=Gcaud7857.t1|Name=Gcaud7857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=834bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:4727..5775- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTTCGCTCGAGGCTCGAGCGTGGAATGCGATTGATCGCGATGTG
GAGCATTTCTTGTTGTCGTGAGCAGGGCTCAACTAGCCGACCATTGCAAT
CCATTGCACTGCACACTGTTTTGCAGTCTTGCTCAAGTGCAGACCGTCGA
ACTCGACTTTTCTTCTGCAATTTAGTCGAATATGCAATCGAGGCCATAAA
ACTGGGATCTACGGCTGTTGGCATTCAGACATCTGAAGGCGTCGTCATCG
CGGTGGAAAAGCGTTTGAATTCGCCTCTTCTTGTTCCCACCTCTGTAGAG
AAGATCATGGAAATCGATCGGCACATTGGTTGCGCTATGTCCGGATTGAC
CGCAGACGCCCGCACACTCATCGATCACGCTAGGGTTGAAACACAACAAC
ATCGATTTGTCTATGACGAGCCTATGACACCGGAAGCCTGCACTCAAGCG
CTTTGCGATCTTGCGCTGCGATTTGGAGAGGATGGCGAGGACCATGATAC
CATGTCTCGTCCATTTGGTGTCGCGTTATTAATCGCGGGCGTTGACAAAG
ATGGGCCAAAGCTTTTTCACACTGACCCATCGGGCACCTATGTAAGGTGG
AAGGCAAAGGCGATTGGTGCGGGTAGCGAAGGAGCACAAACAGCTTTACA
GGAAAGCTACTCGTCTTCAATGACCTTGCAAGAAGCGGAGACGCTTGCGT
TGCGTACATTGAAGCAAGTGATGGAGGAAAAGCTTGACGGTACGAATGTT
GAGGTGGCTGCCGTAACGAAGGAGTCCGGTCTCTTTAGGATTTATTCTCC
GGAAGAACTGAAGCAGTGTATCAGCAGGTTGTGA
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protein sequence of Gcaud7857.t1

>Gcaud7857.t1 ID=Gcaud7857.t1|Name=Gcaud7857.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=278bp
MDFRSRLERGMRLIAMWSISCCREQGSTSRPLQSIALHTVLQSCSSADRR
TRLFFCNLVEYAIEAIKLGSTAVGIQTSEGVVIAVEKRLNSPLLVPTSVE
KIMEIDRHIGCAMSGLTADARTLIDHARVETQQHRFVYDEPMTPEACTQA
LCDLALRFGEDGEDHDTMSRPFGVALLIAGVDKDGPKLFHTDPSGTYVRW
KAKAIGAGSEGAQTALQESYSSSMTLQEAETLALRTLKQVMEEKLDGTNV
EVAAVTKESGLFRIYSPEELKQCISRL*
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mRNA from alignment at NODE_354_length_28917_cov_4.522861:4727..5775-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7857.t1 ID=Gcaud7857.t1|Name=Gcaud7857.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1049bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:4727..5775- (Gracilaria caudata M_176_S67 male)
ATGGATTTTCGCTCGAGGCTCGAGCGTGGAATGCGATTGATCGCGATGTG
GAGCATTTCTTGTTGTCGTGAGCAGGGCTCAACTAGCCGACCATTGCAAT
CCATTGCACTGCACACTGTTTTGCAGTCTTGCTCAAGTGCAGACCGTCGA
ACTCGACTTTTCTTCTGCAATTTAGGTGCGCGCCATGTTTCTAACGCGAT
CTGAATACGATCGAGGAGTGAATACGTTCTCACCAGAAGGTCGCCTCTTT
CAAGTCGAATATGCAATCGAGGCCATAAAACTGGGATCTACGGCTGTTGG
CATTCAGACATCTGAAGGGTAAGTACATCTCAGCACGTTGTAGTCTTTGT
TGCTCCATGGCTTTGTCTGACCATCCCTTTTACAATGCAGCGTCGTCATC
GCGGTGGAAAAGCGTTTGAATTCGCCTCTTCTTGTTCCCACCTCTGTAGA
GAAGATCATGGAAATCGTAAGTATGCAAACCACCCTTCTATAAAATAACC
AACCCGAGTTGCTAACGTCTTTCTGTGAAGGATCGGCACATTGGTTGCGC
TATGTCCGGATTGACCGCAGACGCCCGCACACTCATCGATCACGCTAGGG
TTGAAACACAACAACATCGATTTGTCTATGACGAGCCTATGACACCGGAA
GCCTGCACTCAAGCGCTTTGCGATCTTGCGCTGCGATTTGGAGAGGATGG
CGAGGACCATGATACCATGTCTCGTCCATTTGGTGTCGCGTTATTAATCG
CGGGCGTTGACAAAGATGGGCCAAAGCTTTTTCACACTGACCCATCGGGC
ACCTATGTAAGGTGGAAGGCAAAGGCGATTGGTGCGGGTAGCGAAGGAGC
ACAAACAGCTTTACAGGAAAGCTACTCGTCTTCAATGACCTTGCAAGAAG
CGGAGACGCTTGCGTTGCGTACATTGAAGCAAGTGATGGAGGAAAAGCTT
GACGGTACGAATGTTGAGGTGGCTGCCGTAACGAAGGAGTCCGGTCTCTT
TAGGATTTATTCTCCGGAAGAACTGAAGCAGTGTATCAGCAGGTTGTGA
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Coding sequence (CDS) from alignment at NODE_354_length_28917_cov_4.522861:4727..5775-

>Gcaud7857.t1 ID=Gcaud7857.t1|Name=Gcaud7857.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=834bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:4727..5775- (Gracilaria caudata M_176_S67 male)
ATGGATTTTCGCTCGAGGCTCGAGCGTGGAATGCGATTGATCGCGATGTG
GAGCATTTCTTGTTGTCGTGAGCAGGGCTCAACTAGCCGACCATTGCAAT
CCATTGCACTGCACACTGTTTTGCAGTCTTGCTCAAGTGCAGACCGTCGA
ACTCGACTTTTCTTCTGCAATTTAGTCGAATATGCAATCGAGGCCATAAA
ACTGGGATCTACGGCTGTTGGCATTCAGACATCTGAAGGCGTCGTCATCG
CGGTGGAAAAGCGTTTGAATTCGCCTCTTCTTGTTCCCACCTCTGTAGAG
AAGATCATGGAAATCGATCGGCACATTGGTTGCGCTATGTCCGGATTGAC
CGCAGACGCCCGCACACTCATCGATCACGCTAGGGTTGAAACACAACAAC
ATCGATTTGTCTATGACGAGCCTATGACACCGGAAGCCTGCACTCAAGCG
CTTTGCGATCTTGCGCTGCGATTTGGAGAGGATGGCGAGGACCATGATAC
CATGTCTCGTCCATTTGGTGTCGCGTTATTAATCGCGGGCGTTGACAAAG
ATGGGCCAAAGCTTTTTCACACTGACCCATCGGGCACCTATGTAAGGTGG
AAGGCAAAGGCGATTGGTGCGGGTAGCGAAGGAGCACAAACAGCTTTACA
GGAAAGCTACTCGTCTTCAATGACCTTGCAAGAAGCGGAGACGCTTGCGT
TGCGTACATTGAAGCAAGTGATGGAGGAAAAGCTTGACGGTACGAATGTT
GAGGTGGCTGCCGTAACGAAGGAGTCCGGTCTCTTTAGGATTTATTCTCC
GGAAGAACTGAAGCAGTGTATCAGCAGGTTGTGA
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