Gcaud1431.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1431.t1
Unique Name	Gcaud1431.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	478

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3343_length_3613_cov_3.731687	contig	NODE_3343_length_3613_cov_3.731687:1287..2720 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702795.1
Preferred name	SPX3
PFAMs	SPX
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009267,GO:0009409,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010646,GO:0010647,GO:0012505,GO:0016036,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070417,GO:0071496,GO:0080040,GO:0080134,GO:0080135
Evalue	6.14e-35
EggNOG OGs	COG5036@1\|root,KOG1161@2759\|Eukaryota
Description	cellular response to phosphate starvation
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1431	Gcaud1431	Gracilaria caudata M_176_S67 male	gene	NODE_3343_length_3613_cov_3.731687 1287..2720 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1431.t1.stop1	Gcaud1431.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3343_length_3613_cov_3.731687 1287..1289 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1431.t1.CDS1	Gcaud1431.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3343_length_3613_cov_3.731687 1287..2720 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1431.t1.exon1	Gcaud1431.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3343_length_3613_cov_3.731687 1287..2720 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1431.t1.start1	Gcaud1431.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3343_length_3613_cov_3.731687 2718..2720 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1431.t1	Gcaud1431.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3343_length_3613_cov_3.731687 1287..2720 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3343_length_3613_cov_3.731687:1287..2720-
coding sequence from alignment at NODE_3343_length_3613_cov_3.731687:1287..2720-

mRNA sequence

>Gcaud1431.t1 ID=Gcaud1431.t1|Name=Gcaud1431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=478bp
MKFGKKIRAVVDQSYEEWRPMFMSYKDLKKILSASIPSSSSPPSSENSTT
QSSPRKPLSSQNTAHHDDVLVRTAQVANSQFFTRFRAEVDKVNEFFLDKQ
EDYVIEHQQLTAKLHQLLQPPCATRQQLIHLRQRLTDFHGQLIVLENFST
VNYTGFRKILKKHDKKTGLNVRNIYLKTVLVTPFFLSDTVPHLIRTTESQ
LAQLDSVRKVRRTTTSSCAFDSTTRSSPTSATLSQLTPKQTPISTAPIST
SLPDPHPRPHAFISPCSALWRFYRETRLYAARVHHALQSSPRSIPPPAPV
LAQLLDSVHPSELGIHTSFMANVPTACDYRIVTDEHFAMGFFVFGAGTQL
QLFNVRAATVTRNLYGRVRLRCFETTRGEQREREHERERKRARDDVNHTL
LVRETRRGVTNGPWPSVTTHENSHVQWTPETQSALFYVTVPSKAVERLPR
YRLTPRQDGTFGVLDEGECWPITQVCS*

spliced messenger RNA

>Gcaud1431.t1 ID=Gcaud1431.t1|Name=Gcaud1431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at NODE_3343_length_3613_cov_3.731687:1287..2720- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTGGAAAGAAGATTCGCGCCGTTGTGGACCAGTCGTACGAGGA
ATGGCGCCCCATGTTCATGAGTTACAAGGATCTCAAGAAGATTCTGTCCG
CCTCCATCCCGTCGTCGTCGTCGCCGCCGTCGTCCGAGAACAGCACCACC
CAATCCTCCCCCCGCAAGCCGCTGTCGTCGCAGAACACCGCTCACCACGA
CGACGTGCTGGTGCGCACCGCGCAGGTGGCCAACTCGCAGTTCTTCACGC
GCTTCCGCGCCGAGGTGGACAAAGTGAACGAATTCTTCCTCGACAAGCAG
GAGGACTACGTCATTGAGCACCAGCAGCTCACCGCCAAGCTGCACCAGCT
GTTACAACCGCCGTGTGCCACGCGCCAACAGCTCATTCATCTGCGCCAAC
GCCTCACAGATTTCCACGGCCAACTCATCGTGCTGGAGAACTTCTCCACC
GTCAACTACACCGGTTTTCGCAAGATCCTCAAGAAACACGACAAGAAGAC
GGGGCTCAACGTGCGCAACATCTACCTCAAAACGGTGCTCGTCACGCCCT
TCTTTCTGTCCGACACCGTTCCGCATCTCATTCGCACCACCGAGTCGCAG
CTGGCGCAACTGGACTCGGTGCGAAAGGTGCGTCGAACCACCACATCCTC
GTGCGCCTTCGATTCCACCACTCGTTCCTCACCCACGTCGGCCACACTCA
GTCAACTCACCCCAAAACAAACGCCCATCTCAACCGCACCCATCTCAACC
TCGTTACCCGATCCGCACCCGCGACCGCACGCCTTCATCTCGCCGTGCTC
CGCTCTGTGGCGCTTCTACCGCGAAACGCGCCTGTACGCCGCGCGCGTGC
ACCACGCGCTGCAATCGTCGCCGCGCAGCATCCCGCCGCCCGCGCCCGTG
CTGGCGCAATTGTTGGACTCGGTGCATCCGAGTGAGCTTGGCATTCACAC
ATCGTTCATGGCCAACGTGCCCACCGCGTGTGATTATCGCATTGTGACGG
ATGAGCACTTTGCGATGGGCTTCTTTGTGTTTGGCGCCGGCACGCAGCTC
CAGTTGTTCAACGTGCGCGCGGCCACCGTCACACGCAACTTGTACGGGCG
CGTGCGCTTACGCTGCTTTGAAACCACGCGTGGTGAACAGCGCGAGCGCG
AGCACGAGCGCGAGCGCAAGCGCGCGCGCGATGACGTGAATCACACGCTG
CTTGTGCGCGAGACGCGGCGCGGAGTGACCAATGGACCGTGGCCTTCGGT
GACCACGCACGAGAACTCGCACGTGCAGTGGACGCCGGAGACGCAGAGCG
CGCTGTTTTATGTGACTGTGCCGTCGAAGGCTGTGGAGCGATTGCCCAGA
TACCGACTGACACCTCGGCAGGACGGCACGTTTGGCGTGCTGGACGAGGG
CGAGTGCTGGCCGATCACGCAGGTGTGTAGTTGA

protein sequence of Gcaud1431.t1

>Gcaud1431.t1 ID=Gcaud1431.t1|Name=Gcaud1431.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=478bp
MKFGKKIRAVVDQSYEEWRPMFMSYKDLKKILSASIPSSSSPPSSENSTT
QSSPRKPLSSQNTAHHDDVLVRTAQVANSQFFTRFRAEVDKVNEFFLDKQ
EDYVIEHQQLTAKLHQLLQPPCATRQQLIHLRQRLTDFHGQLIVLENFST
VNYTGFRKILKKHDKKTGLNVRNIYLKTVLVTPFFLSDTVPHLIRTTESQ
LAQLDSVRKVRRTTTSSCAFDSTTRSSPTSATLSQLTPKQTPISTAPIST
SLPDPHPRPHAFISPCSALWRFYRETRLYAARVHHALQSSPRSIPPPAPV
LAQLLDSVHPSELGIHTSFMANVPTACDYRIVTDEHFAMGFFVFGAGTQL
QLFNVRAATVTRNLYGRVRLRCFETTRGEQREREHERERKRARDDVNHTL
LVRETRRGVTNGPWPSVTTHENSHVQWTPETQSALFYVTVPSKAVERLPR
YRLTPRQDGTFGVLDEGECWPITQVCS*

mRNA from alignment at NODE_3343_length_3613_cov_3.731687:1287..2720-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1431.t1 ID=Gcaud1431.t1|Name=Gcaud1431.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at NODE_3343_length_3613_cov_3.731687:1287..2720- (Gracilaria caudata M_176_S67 male)
ATGAAGTTTGGAAAGAAGATTCGCGCCGTTGTGGACCAGTCGTACGAGGA
ATGGCGCCCCATGTTCATGAGTTACAAGGATCTCAAGAAGATTCTGTCCG
CCTCCATCCCGTCGTCGTCGTCGCCGCCGTCGTCCGAGAACAGCACCACC
CAATCCTCCCCCCGCAAGCCGCTGTCGTCGCAGAACACCGCTCACCACGA
CGACGTGCTGGTGCGCACCGCGCAGGTGGCCAACTCGCAGTTCTTCACGC
GCTTCCGCGCCGAGGTGGACAAAGTGAACGAATTCTTCCTCGACAAGCAG
GAGGACTACGTCATTGAGCACCAGCAGCTCACCGCCAAGCTGCACCAGCT
GTTACAACCGCCGTGTGCCACGCGCCAACAGCTCATTCATCTGCGCCAAC
GCCTCACAGATTTCCACGGCCAACTCATCGTGCTGGAGAACTTCTCCACC
GTCAACTACACCGGTTTTCGCAAGATCCTCAAGAAACACGACAAGAAGAC
GGGGCTCAACGTGCGCAACATCTACCTCAAAACGGTGCTCGTCACGCCCT
TCTTTCTGTCCGACACCGTTCCGCATCTCATTCGCACCACCGAGTCGCAG
CTGGCGCAACTGGACTCGGTGCGAAAGGTGCGTCGAACCACCACATCCTC
GTGCGCCTTCGATTCCACCACTCGTTCCTCACCCACGTCGGCCACACTCA
GTCAACTCACCCCAAAACAAACGCCCATCTCAACCGCACCCATCTCAACC
TCGTTACCCGATCCGCACCCGCGACCGCACGCCTTCATCTCGCCGTGCTC
CGCTCTGTGGCGCTTCTACCGCGAAACGCGCCTGTACGCCGCGCGCGTGC
ACCACGCGCTGCAATCGTCGCCGCGCAGCATCCCGCCGCCCGCGCCCGTG
CTGGCGCAATTGTTGGACTCGGTGCATCCGAGTGAGCTTGGCATTCACAC
ATCGTTCATGGCCAACGTGCCCACCGCGTGTGATTATCGCATTGTGACGG
ATGAGCACTTTGCGATGGGCTTCTTTGTGTTTGGCGCCGGCACGCAGCTC
CAGTTGTTCAACGTGCGCGCGGCCACCGTCACACGCAACTTGTACGGGCG
CGTGCGCTTACGCTGCTTTGAAACCACGCGTGGTGAACAGCGCGAGCGCG
AGCACGAGCGCGAGCGCAAGCGCGCGCGCGATGACGTGAATCACACGCTG
CTTGTGCGCGAGACGCGGCGCGGAGTGACCAATGGACCGTGGCCTTCGGT
GACCACGCACGAGAACTCGCACGTGCAGTGGACGCCGGAGACGCAGAGCG
CGCTGTTTTATGTGACTGTGCCGTCGAAGGCTGTGGAGCGATTGCCCAGA
TACCGACTGACACCTCGGCAGGACGGCACGTTTGGCGTGCTGGACGAGGG
CGAGTGCTGGCCGATCACGCAGGTGTGTAGTTGA

Coding sequence (CDS) from alignment at NODE_3343_length_3613_cov_3.731687:1287..2720-

>Gcaud1431.t1 ID=Gcaud1431.t1|Name=Gcaud1431.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1434bp|location=Sequence derived from alignment at NODE_3343_length_3613_cov_3.731687:1287..2720- (Gracilaria caudata M_176_S67 male)
ATGAAGTTTGGAAAGAAGATTCGCGCCGTTGTGGACCAGTCGTACGAGGA
ATGGCGCCCCATGTTCATGAGTTACAAGGATCTCAAGAAGATTCTGTCCG
CCTCCATCCCGTCGTCGTCGTCGCCGCCGTCGTCCGAGAACAGCACCACC
CAATCCTCCCCCCGCAAGCCGCTGTCGTCGCAGAACACCGCTCACCACGA
CGACGTGCTGGTGCGCACCGCGCAGGTGGCCAACTCGCAGTTCTTCACGC
GCTTCCGCGCCGAGGTGGACAAAGTGAACGAATTCTTCCTCGACAAGCAG
GAGGACTACGTCATTGAGCACCAGCAGCTCACCGCCAAGCTGCACCAGCT
GTTACAACCGCCGTGTGCCACGCGCCAACAGCTCATTCATCTGCGCCAAC
GCCTCACAGATTTCCACGGCCAACTCATCGTGCTGGAGAACTTCTCCACC
GTCAACTACACCGGTTTTCGCAAGATCCTCAAGAAACACGACAAGAAGAC
GGGGCTCAACGTGCGCAACATCTACCTCAAAACGGTGCTCGTCACGCCCT
TCTTTCTGTCCGACACCGTTCCGCATCTCATTCGCACCACCGAGTCGCAG
CTGGCGCAACTGGACTCGGTGCGAAAGGTGCGTCGAACCACCACATCCTC
GTGCGCCTTCGATTCCACCACTCGTTCCTCACCCACGTCGGCCACACTCA
GTCAACTCACCCCAAAACAAACGCCCATCTCAACCGCACCCATCTCAACC
TCGTTACCCGATCCGCACCCGCGACCGCACGCCTTCATCTCGCCGTGCTC
CGCTCTGTGGCGCTTCTACCGCGAAACGCGCCTGTACGCCGCGCGCGTGC
ACCACGCGCTGCAATCGTCGCCGCGCAGCATCCCGCCGCCCGCGCCCGTG
CTGGCGCAATTGTTGGACTCGGTGCATCCGAGTGAGCTTGGCATTCACAC
ATCGTTCATGGCCAACGTGCCCACCGCGTGTGATTATCGCATTGTGACGG
ATGAGCACTTTGCGATGGGCTTCTTTGTGTTTGGCGCCGGCACGCAGCTC
CAGTTGTTCAACGTGCGCGCGGCCACCGTCACACGCAACTTGTACGGGCG
CGTGCGCTTACGCTGCTTTGAAACCACGCGTGGTGAACAGCGCGAGCGCG
AGCACGAGCGCGAGCGCAAGCGCGCGCGCGATGACGTGAATCACACGCTG
CTTGTGCGCGAGACGCGGCGCGGAGTGACCAATGGACCGTGGCCTTCGGT
GACCACGCACGAGAACTCGCACGTGCAGTGGACGCCGGAGACGCAGAGCG
CGCTGTTTTATGTGACTGTGCCGTCGAAGGCTGTGGAGCGATTGCCCAGA
TACCGACTGACACCTCGGCAGGACGGCACGTTTGGCGTGCTGGACGAGGG
CGAGTGCTGGCCGATCACGCAGGTGTGTAGTTGA