Gcaud1531.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1531.t1
Unique NameGcaud1531.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length71
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_332_length_29614_cov_4.285540contigNODE_332_length_29614_cov_4.285540:25919..26232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1531Gcaud1531Gracilaria caudata M_176_S67 malegeneNODE_332_length_29614_cov_4.285540 25919..26232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1531.t1Gcaud1531.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_332_length_29614_cov_4.285540 25919..26232 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1531.t1.start1Gcaud1531.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_332_length_29614_cov_4.285540 25919..25921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1531.t1.CDS1Gcaud1531.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_332_length_29614_cov_4.285540 25919..25982 +
Gcaud1531.t1.CDS2Gcaud1531.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_332_length_29614_cov_4.285540 26084..26232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1531.t1.exon1Gcaud1531.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_332_length_29614_cov_4.285540 25919..25982 +
Gcaud1531.t1.exon2Gcaud1531.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_332_length_29614_cov_4.285540 26084..26232 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1531.t1.intron1Gcaud1531.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_332_length_29614_cov_4.285540 25983..26083 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1531.t1.stop1Gcaud1531.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_332_length_29614_cov_4.285540 26230..26232 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1531.t1 ID=Gcaud1531.t1|Name=Gcaud1531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=71bp
MKSWLDPIRKQTEKHRVCTAQAAAMILQELGDVKTSEVIENAVRQVVRVS
CSRRVQHLKTGTTVALRKKG*
back to top

spliced messenger RNA

>Gcaud1531.t1 ID=Gcaud1531.t1|Name=Gcaud1531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=213bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:25919..26232+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCTTGGCTTGATCCAATCCGGAAGCAGACGGAGAAGCATCGCGT
TTGCACCGCTCAAGCTGCAGCAATGATTCTCCAAGAATTGGGTGATGTCA
AAACTAGTGAAGTCATCGAGAACGCTGTGCGACAAGTTGTTCGTGTTTCT
TGCTCTCGCAGAGTGCAGCATCTGAAAACGGGTACAACGGTTGCACTTCG
GAAGAAAGGCTGA
back to top

protein sequence of Gcaud1531.t1

>Gcaud1531.t1 ID=Gcaud1531.t1|Name=Gcaud1531.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=71bp
MKSWLDPIRKQTEKHRVCTAQAAAMILQELGDVKTSEVIENAVRQVVRVS
CSRRVQHLKTGTTVALRKKG*
back to top

mRNA from alignment at NODE_332_length_29614_cov_4.285540:25919..26232+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1531.t1 ID=Gcaud1531.t1|Name=Gcaud1531.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=314bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:25919..26232+ (Gracilaria caudata M_176_S67 male)
ATGAAATCTTGGCTTGATCCAATCCGGAAGCAGACGGAGAAGCATCGCGT
TTGCACCGCTCAAGGTACGCTGTTGAACCTCTTTGAATCCTGTGTCCTTC
ATTGCTTCCGATGTCTGCACTCATGTATTAACAAAACTTTGTGTGTATCC
TTGTTCTTTAAACAGCTGCAGCAATGATTCTCCAAGAATTGGGTGATGTC
AAAACTAGTGAAGTCATCGAGAACGCTGTGCGACAAGTTGTTCGTGTTTC
TTGCTCTCGCAGAGTGCAGCATCTGAAAACGGGTACAACGGTTGCACTTC
GGAAGAAAGGCTGA
back to top

Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:25919..26232+

>Gcaud1531.t1 ID=Gcaud1531.t1|Name=Gcaud1531.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=213bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:25919..26232+ (Gracilaria caudata M_176_S67 male)
ATGAAATCTTGGCTTGATCCAATCCGGAAGCAGACGGAGAAGCATCGCGT
TTGCACCGCTCAAGCTGCAGCAATGATTCTCCAAGAATTGGGTGATGTCA
AAACTAGTGAAGTCATCGAGAACGCTGTGCGACAAGTTGTTCGTGTTTCT
TGCTCTCGCAGAGTGCAGCATCTGAAAACGGGTACAACGGTTGCACTTCG
GAAGAAAGGCTGA
back to top