Gcaud1522.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1522.t1
Unique NameGcaud1522.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_332_length_29614_cov_4.285540contigNODE_332_length_29614_cov_4.285540:11156..11587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1522Gcaud1522Gracilaria caudata M_176_S67 malegeneNODE_332_length_29614_cov_4.285540 11156..11587 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1522.t1.stop1Gcaud1522.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_332_length_29614_cov_4.285540 11156..11158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1522.t1.CDS1Gcaud1522.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_332_length_29614_cov_4.285540 11156..11587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1522.t1.exon1Gcaud1522.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_332_length_29614_cov_4.285540 11156..11587 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1522.t1.start1Gcaud1522.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_332_length_29614_cov_4.285540 11585..11587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1522.t1Gcaud1522.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_332_length_29614_cov_4.285540 11156..11587 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1522.t1 ID=Gcaud1522.t1|Name=Gcaud1522.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=144bp
MHSPGSESNSVVQDARDSDVSGEAGRQWEVGGFREISVVLVMQHLTLLGP
GHKPVRVDPEHVDSSIHKPSTAEHWELATPAGDGQHRMLEPPGHNLDNVE
RVQEYMLVSLQVPLLHGSHAPRSDPPPSSVVGGGVRVGLGDAD*
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spliced messenger RNA

>Gcaud1522.t1 ID=Gcaud1522.t1|Name=Gcaud1522.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=432bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:11156..11587- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCACCCGGCAGTGAATCGAACTCAGTCGTACAAGATGCAAGGGA
CTCAGATGTATCCGGTGAAGCCGGGAGACAATGGGAAGTGGGCGGATTTA
GGGAGATTTCTGTTGTATTGGTTATGCAACATTTGACATTGCTAGGTCCG
GGGCATAAACCCGTTCGAGTCGACCCGGAGCATGTGGACTCGAGCATACA
CAAACCGTCGACGGCTGAGCATTGGGAGCTAGCGACGCCTGCTGGCGACG
GACAGCATCGAATGTTGGAGCCGCCTGGACACAACTTAGATAACGTTGAG
AGGGTGCAGGAGTACATGTTGGTGTCTTTACAGGTGCCGCTGCTGCACGG
TTCCCATGCACCGAGAAGTGATCCTCCTCCATCATCGGTTGTGGGCGGTG
GGGTGCGCGTTGGGCTGGGCGATGCAGACTGA
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protein sequence of Gcaud1522.t1

>Gcaud1522.t1 ID=Gcaud1522.t1|Name=Gcaud1522.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=144bp
MHSPGSESNSVVQDARDSDVSGEAGRQWEVGGFREISVVLVMQHLTLLGP
GHKPVRVDPEHVDSSIHKPSTAEHWELATPAGDGQHRMLEPPGHNLDNVE
RVQEYMLVSLQVPLLHGSHAPRSDPPPSSVVGGGVRVGLGDAD*
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mRNA from alignment at NODE_332_length_29614_cov_4.285540:11156..11587-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1522.t1 ID=Gcaud1522.t1|Name=Gcaud1522.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=432bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:11156..11587- (Gracilaria caudata M_176_S67 male)
ATGCATTCACCCGGCAGTGAATCGAACTCAGTCGTACAAGATGCAAGGGA
CTCAGATGTATCCGGTGAAGCCGGGAGACAATGGGAAGTGGGCGGATTTA
GGGAGATTTCTGTTGTATTGGTTATGCAACATTTGACATTGCTAGGTCCG
GGGCATAAACCCGTTCGAGTCGACCCGGAGCATGTGGACTCGAGCATACA
CAAACCGTCGACGGCTGAGCATTGGGAGCTAGCGACGCCTGCTGGCGACG
GACAGCATCGAATGTTGGAGCCGCCTGGACACAACTTAGATAACGTTGAG
AGGGTGCAGGAGTACATGTTGGTGTCTTTACAGGTGCCGCTGCTGCACGG
TTCCCATGCACCGAGAAGTGATCCTCCTCCATCATCGGTTGTGGGCGGTG
GGGTGCGCGTTGGGCTGGGCGATGCAGACTGA
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Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:11156..11587-

>Gcaud1522.t1 ID=Gcaud1522.t1|Name=Gcaud1522.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=432bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:11156..11587- (Gracilaria caudata M_176_S67 male)
ATGCATTCACCCGGCAGTGAATCGAACTCAGTCGTACAAGATGCAAGGGA
CTCAGATGTATCCGGTGAAGCCGGGAGACAATGGGAAGTGGGCGGATTTA
GGGAGATTTCTGTTGTATTGGTTATGCAACATTTGACATTGCTAGGTCCG
GGGCATAAACCCGTTCGAGTCGACCCGGAGCATGTGGACTCGAGCATACA
CAAACCGTCGACGGCTGAGCATTGGGAGCTAGCGACGCCTGCTGGCGACG
GACAGCATCGAATGTTGGAGCCGCCTGGACACAACTTAGATAACGTTGAG
AGGGTGCAGGAGTACATGTTGGTGTCTTTACAGGTGCCGCTGCTGCACGG
TTCCCATGCACCGAGAAGTGATCCTCCTCCATCATCGGTTGTGGGCGGTG
GGGTGCGCGTTGGGCTGGGCGATGCAGACTGA
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