Gcaud1524.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1524.t1
Unique Name	Gcaud1524.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_332_length_29614_cov_4.285540	contig	NODE_332_length_29614_cov_4.285540:13197..14075 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707161.1
Preferred name	PIM1
PFAMs	AAA,LON_substr_bdg,Lon_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08675
GOs	GO:0000002,GO:0000166,GO:0001018,GO:0001067,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0004175,GO:0004176,GO:0004252,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009295,GO:0009314,GO:0009408,GO:0009507,GO:0009536,GO:0009628,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010044,GO:0010165,GO:0010212,GO:0010604,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017171,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0030163,GO:0030554,GO:0031974,GO:0031981,GO:0032042,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0035639,GO:0035694,GO:0036094,GO:0036293,GO:0042176,GO:0042221,GO:0042579,GO:0042623,GO:0042645,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043531,GO:0043565,GO:0043632,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051131,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051716,GO:0051880,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070182,GO:0070407,GO:0070482,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Evalue	1.4e-22
EggNOG OGs	COG0466@1\|root,KOG2004@2759\|Eukaryota
EC	3.4.21.53
Description	ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
COG category	O
BRITE	ko00000,ko01000,ko01002,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1524	Gcaud1524	Gracilaria caudata M_176_S67 male	gene	NODE_332_length_29614_cov_4.285540 13197..14075 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1524.t1.start1	Gcaud1524.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_332_length_29614_cov_4.285540 13197..13199 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1524.t1.CDS1	Gcaud1524.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_332_length_29614_cov_4.285540 13197..14075 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1524.t1.exon1	Gcaud1524.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_332_length_29614_cov_4.285540 13197..14075 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1524.t1.stop1	Gcaud1524.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_332_length_29614_cov_4.285540 14073..14075 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1524.t1	Gcaud1524.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_332_length_29614_cov_4.285540 13197..14075 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_332_length_29614_cov_4.285540:13197..14075+
coding sequence from alignment at NODE_332_length_29614_cov_4.285540:13197..14075+

mRNA sequence

>Gcaud1524.t1 ID=Gcaud1524.t1|Name=Gcaud1524.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MRGQDGGGVVIASRFWGETEDDFSRLWAFIMKCNSLLSDVCLMLTVAINE
ERDKIGSWDRIISRQQDLHLPIPLKIIRISPWGGVTHALNLLLFQALALF
PESQFILFQSPEVVPDKPALLHLEDMMSAHPSTLVVGHTFKEHRMYSNRG
NSDTETIITPLAADVCPWNTMALWNMKMLARTGFPAVADCVNPPGMEEVG
VIALQQMLYGPVKAMARLYQSPVNISWINDFDDVERRERHLQKMATKASR
AKEITQMLGMQEQGFCPLVEIHFTPCVRNNARASNVEEQASA*

spliced messenger RNA

>Gcaud1524.t1 ID=Gcaud1524.t1|Name=Gcaud1524.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:13197..14075+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGCCAAGACGGAGGTGGAGTTGTAATCGCCTCTCGGTTCTGGGG
AGAGACCGAAGACGACTTTTCCCGTCTGTGGGCTTTTATTATGAAATGCA
ACAGTCTTCTTTCAGATGTATGCTTGATGTTGACCGTTGCAATAAATGAA
GAAAGAGACAAGATTGGGAGCTGGGATAGAATAATTTCAAGACAACAAGA
TCTGCACTTACCAATACCGCTGAAGATTATCCGCATATCTCCTTGGGGAG
GGGTTACACATGCTCTTAATCTACTTTTATTTCAAGCTCTCGCTCTGTTC
CCTGAGAGCCAATTCATACTATTCCAGTCTCCTGAAGTCGTTCCTGATAA
ACCGGCCCTTCTGCATCTCGAAGATATGATGTCTGCACATCCAAGCACCC
TTGTGGTGGGTCATACTTTCAAAGAGCACAGAATGTATTCAAACCGAGGC
AATAGTGATACTGAAACAATCATCACTCCTCTCGCAGCCGATGTTTGTCC
ATGGAACACAATGGCACTTTGGAACATGAAAATGCTTGCAAGAACTGGAT
TTCCTGCTGTGGCAGATTGCGTGAATCCACCTGGAATGGAGGAGGTTGGA
GTAATAGCCCTCCAACAAATGCTATACGGACCTGTGAAAGCTATGGCTCG
ACTTTACCAAAGTCCAGTGAATATCAGCTGGATCAACGATTTCGATGACG
TTGAGAGAAGGGAGCGCCATCTTCAAAAGATGGCAACAAAGGCATCTCGA
GCAAAAGAAATAACGCAAATGCTTGGGATGCAAGAACAAGGCTTCTGTCC
TCTGGTAGAGATTCATTTTACGCCTTGTGTAAGGAATAATGCTCGCGCCT
CCAACGTCGAAGAACAAGCGTCAGCCTGA

protein sequence of Gcaud1524.t1

>Gcaud1524.t1 ID=Gcaud1524.t1|Name=Gcaud1524.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MRGQDGGGVVIASRFWGETEDDFSRLWAFIMKCNSLLSDVCLMLTVAINE
ERDKIGSWDRIISRQQDLHLPIPLKIIRISPWGGVTHALNLLLFQALALF
PESQFILFQSPEVVPDKPALLHLEDMMSAHPSTLVVGHTFKEHRMYSNRG
NSDTETIITPLAADVCPWNTMALWNMKMLARTGFPAVADCVNPPGMEEVG
VIALQQMLYGPVKAMARLYQSPVNISWINDFDDVERRERHLQKMATKASR
AKEITQMLGMQEQGFCPLVEIHFTPCVRNNARASNVEEQASA*

mRNA from alignment at NODE_332_length_29614_cov_4.285540:13197..14075+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1524.t1 ID=Gcaud1524.t1|Name=Gcaud1524.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:13197..14075+ (Gracilaria caudata M_176_S67 male)
ATGAGAGGCCAAGACGGAGGTGGAGTTGTAATCGCCTCTCGGTTCTGGGG
AGAGACCGAAGACGACTTTTCCCGTCTGTGGGCTTTTATTATGAAATGCA
ACAGTCTTCTTTCAGATGTATGCTTGATGTTGACCGTTGCAATAAATGAA
GAAAGAGACAAGATTGGGAGCTGGGATAGAATAATTTCAAGACAACAAGA
TCTGCACTTACCAATACCGCTGAAGATTATCCGCATATCTCCTTGGGGAG
GGGTTACACATGCTCTTAATCTACTTTTATTTCAAGCTCTCGCTCTGTTC
CCTGAGAGCCAATTCATACTATTCCAGTCTCCTGAAGTCGTTCCTGATAA
ACCGGCCCTTCTGCATCTCGAAGATATGATGTCTGCACATCCAAGCACCC
TTGTGGTGGGTCATACTTTCAAAGAGCACAGAATGTATTCAAACCGAGGC
AATAGTGATACTGAAACAATCATCACTCCTCTCGCAGCCGATGTTTGTCC
ATGGAACACAATGGCACTTTGGAACATGAAAATGCTTGCAAGAACTGGAT
TTCCTGCTGTGGCAGATTGCGTGAATCCACCTGGAATGGAGGAGGTTGGA
GTAATAGCCCTCCAACAAATGCTATACGGACCTGTGAAAGCTATGGCTCG
ACTTTACCAAAGTCCAGTGAATATCAGCTGGATCAACGATTTCGATGACG
TTGAGAGAAGGGAGCGCCATCTTCAAAAGATGGCAACAAAGGCATCTCGA
GCAAAAGAAATAACGCAAATGCTTGGGATGCAAGAACAAGGCTTCTGTCC
TCTGGTAGAGATTCATTTTACGCCTTGTGTAAGGAATAATGCTCGCGCCT
CCAACGTCGAAGAACAAGCGTCAGCCTGA

Coding sequence (CDS) from alignment at NODE_332_length_29614_cov_4.285540:13197..14075+

>Gcaud1524.t1 ID=Gcaud1524.t1|Name=Gcaud1524.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_332_length_29614_cov_4.285540:13197..14075+ (Gracilaria caudata M_176_S67 male)
ATGAGAGGCCAAGACGGAGGTGGAGTTGTAATCGCCTCTCGGTTCTGGGG
AGAGACCGAAGACGACTTTTCCCGTCTGTGGGCTTTTATTATGAAATGCA
ACAGTCTTCTTTCAGATGTATGCTTGATGTTGACCGTTGCAATAAATGAA
GAAAGAGACAAGATTGGGAGCTGGGATAGAATAATTTCAAGACAACAAGA
TCTGCACTTACCAATACCGCTGAAGATTATCCGCATATCTCCTTGGGGAG
GGGTTACACATGCTCTTAATCTACTTTTATTTCAAGCTCTCGCTCTGTTC
CCTGAGAGCCAATTCATACTATTCCAGTCTCCTGAAGTCGTTCCTGATAA
ACCGGCCCTTCTGCATCTCGAAGATATGATGTCTGCACATCCAAGCACCC
TTGTGGTGGGTCATACTTTCAAAGAGCACAGAATGTATTCAAACCGAGGC
AATAGTGATACTGAAACAATCATCACTCCTCTCGCAGCCGATGTTTGTCC
ATGGAACACAATGGCACTTTGGAACATGAAAATGCTTGCAAGAACTGGAT
TTCCTGCTGTGGCAGATTGCGTGAATCCACCTGGAATGGAGGAGGTTGGA
GTAATAGCCCTCCAACAAATGCTATACGGACCTGTGAAAGCTATGGCTCG
ACTTTACCAAAGTCCAGTGAATATCAGCTGGATCAACGATTTCGATGACG
TTGAGAGAAGGGAGCGCCATCTTCAAAAGATGGCAACAAAGGCATCTCGA
GCAAAAGAAATAACGCAAATGCTTGGGATGCAAGAACAAGGCTTCTGTCC
TCTGGTAGAGATTCATTTTACGCCTTGTGTAAGGAATAATGCTCGCGCCT
CCAACGTCGAAGAACAAGCGTCAGCCTGA