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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005709324.1 |
| Preferred name | TYR1 |
| PFAMs | PDH |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00002,RC00017,RC00125 |
| KEGG ko | ko:K00211,ko:K00852,ko:K12586,ko:K15227 |
| KEGG Reaction | R00733,R01051,R01730,R02750 |
| KEGG Pathway | ko00030,ko00400,ko01100,ko01110,ko01130,ko01230,ko03018,map00030,map00400,map01100,map01110,map01130,map01230,map03018 |
| KEGG Module | M00040,M00391 |
| GOs | GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008977,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019438,GO:0019752,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 |
| Evalue | 3.94e-107 |
| EggNOG OGs | COG0287@1|root,KOG2380@2759|Eukaryota |
| EC | 1.3.1.13,1.3.1.78,2.7.1.15 |
| Description | prephenate dehydrogenase (NADP ) activity |
| COG category | E |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03019 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8618.t1.stop1 | Gcaud8618.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_329_length_29763_cov_4.543981 15543..15545 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8618.t1.start1 | Gcaud8618.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_329_length_29763_cov_4.543981 17024..17026 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8618.t1 ID=Gcaud8618.t1|Name=Gcaud8618.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=307bp
MSFQNAQCQPRFKPLTIGIVGFGNFGQFLGKRFASQGHRVIGQSRGNYFE
AAATIGCEYVQRANELMDQEPDVVIFCTSIMSLSTVLSHFPLKRLANTLV
VDVLSVKLYPHDLLLKCLPFSSDIICTHPMFGPESGKDSWKGLPFVYDVV
RVNPKHQAVCDAFVDIWRTEGCTMVPMDCATHDKHAASTQFITHTTGRML
AQLHVESTPINTKGYESLLGVVDTTCKDSFALYYGLYKYNPNARQELDNL
EAALKDIRKMLDLAEDNEAQRKKNARSIRLPSPIGRTMALSDEVLLSLMK
RAAPRA* back to topspliced messenger RNA >Gcaud8618.t1 ID=Gcaud8618.t1|Name=Gcaud8618.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=921bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:15543..17026- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTTTTCAAAACGCCCAGTGTCAGCCGCGCTTCAAGCCTCTAACCAT
TGGAATTGTTGGCTTCGGAAACTTTGGTCAGTTTCTGGGCAAGAGGTTTG
CGTCGCAAGGTCATCGCGTGATTGGCCAGAGTCGCGGCAATTACTTTGAA
GCTGCTGCTACTATAGGTTGCGAATATGTTCAACGAGCGAACGAGCTCAT
GGACCAAGAGCCAGATGTGGTTATTTTCTGCACAAGTATAATGTCTCTGT
CCACAGTTCTCTCCCATTTTCCGCTCAAAAGACTGGCGAATACGCTAGTG
GTTGATGTGCTTTCCGTCAAGCTGTACCCACATGATCTGCTGCTCAAGTG
TCTACCTTTTTCATCTGATATCATTTGCACGCACCCAATGTTTGGTCCGG
AAAGTGGCAAGGACTCATGGAAGGGTCTGCCATTTGTGTACGACGTTGTT
CGTGTAAATCCCAAACACCAAGCCGTTTGCGACGCTTTCGTTGACATTTG
GAGAACCGAAGGATGTACCATGGTTCCTATGGACTGTGCCACACATGACA
AACACGCAGCGTCAACGCAATTCATCACGCACACAACAGGCCGCATGCTT
GCCCAACTGCATGTTGAATCCACTCCGATCAACACGAAGGGTTACGAATC
GCTGCTTGGTGTGGTGGACACAACCTGCAAGGACAGCTTTGCCTTGTACT
ACGGCTTGTACAAGTACAACCCGAACGCGAGACAGGAGTTGGATAATTTG
GAAGCGGCGCTCAAGGACATAAGGAAAATGCTTGACCTGGCTGAGGACAA
CGAAGCTCAACGAAAAAAAAATGCCAGAAGCATTCGCCTTCCGAGCCCAA
TAGGGCGCACCATGGCCCTTTCTGATGAGGTTTTGCTAAGTCTAATGAAG
CGTGCTGCTCCGCGTGCTTGA back to topprotein sequence of Gcaud8618.t1 >Gcaud8618.t1 ID=Gcaud8618.t1|Name=Gcaud8618.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=307bp
MSFQNAQCQPRFKPLTIGIVGFGNFGQFLGKRFASQGHRVIGQSRGNYFE
AAATIGCEYVQRANELMDQEPDVVIFCTSIMSLSTVLSHFPLKRLANTLV
VDVLSVKLYPHDLLLKCLPFSSDIICTHPMFGPESGKDSWKGLPFVYDVV
RVNPKHQAVCDAFVDIWRTEGCTMVPMDCATHDKHAASTQFITHTTGRML
AQLHVESTPINTKGYESLLGVVDTTCKDSFALYYGLYKYNPNARQELDNL
EAALKDIRKMLDLAEDNEAQRKKNARSIRLPSPIGRTMALSDEVLLSLMK
RAAPRA* back to topmRNA from alignment at NODE_329_length_29763_cov_4.543981:15543..17026- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8618.t1 ID=Gcaud8618.t1|Name=Gcaud8618.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1484bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:15543..17026- (Gracilaria caudata M_176_S67 male)
ATGTCTTTTCAAAACGCCCAGTGTCAGCCGCGCTTCAAGCCTCTAACCAT
TGGAATTGTTGGCTTCGGAAACTTTGGTCAGTTTCTGGGCAAGAGGTTTG
CGTCGCAAGGTCATCGGTATGTTGTCGTTCTCACTTGTTCCGTCGTAACG
ATCATACTGTCAATTCGCTAACTATTCACATGCACATCCACAGCGTGATT
GGCCAGAGTCGCGGCAATTACTTTGAAGCTGCTGCTACTATAGGTTGCGA
ATATGTTCAACGAGCGAACGAGCTCATGGACCAAGAGCCAGATGTGGTTA
TTTTCTGCACAAGTATAATGTCTCTGTCCACAGTTCTCTCCCATTTTCCG
CTCAAAAGGTAAGTCATTCCTTAGCCCAAATCGTGTTACGGCCAAAAACA
GCGACCTAACATCCGCATGTGATGTTATTATGAACGGAAAAGACTGGCGA
ATACGCTAGTGGTTGATGTGCTTTCCGTCAAGCTGTACCCACATGATCTG
CTGCTCAAGTGTCTACCTTTTTCATCTGATATCATTTGCACGCACCCAAT
GTTTGGTCCGGAAAGTGGCAAGGACTCATGGAAGGGTCTGCCATTTGTGT
ACGACGTTGTTCGTGTAAATCCCAAACACCAAGCCGTTTGCGACGCTTTC
GTTGACATTTGGAGAACCGAAGGATGTACCATGGTTCCTATGGACTGTGC
CACACATGACAAACACGCAGCGTCAACGCAATTCATCACGCACACAACAG
GTTCGTTTAGGCTTCCATGACACACATGCAGGTAACCTCATATACGTACG
TCTCTAACACGCTTACGTGACCCGTTTTCTACACTTCGATCTACAGGCCG
CATGCTTGCCCAACTGCATGTTGAATCCACTCCGATCAACACGAAGGGTT
ACGAATCGCTGCTTGGTGTGGTGGACACAACCTGCAAGGACAGCTTTGCC
TTGTACTACGGCTTGTACAAGTACAACCCGAACGCGAGACAGGAGTTGGA
TAATTTGGAAGCGGCGCTCAAGGACATAAGGAAAATGCTTGACCTGGCTG
AGGACAACGAAGCTCAACGAAAAAAGTAATGATATTTCATTTTCAATCCC
CCGTTCATCTACCAAACAGCCGTGTGGCGCTGCTGAAAAGGCTGCGGCGG
TAGCGTTTACAGGTAGCGCGAAACAGCACAGCTTTGACAAGGGTAGCGTT
GACAACGCTAGCAGCGAACGAAGCCCTGCCGTTGTGATGGACAGTCCCTT
TCCCACACTTGGGAGACCTCCTGCCATCATCGTGGTTGAGTCACACAGCT
GTAACATCTTTCACCTTCACCTTCATGTCGTACTAACCTCTTGATTCTTG
TGTGTATCAATTCTTTCATTCATGTTCATAGAAATGCCAGAAGCATTCGC
CTTCCGAGCCCAATAGGGCGCACCATGGCCCTTTCTGATGAGGTTTTGCT
AAGTCTAATGAAGCGTGCTGCTCCGCGTGCTTGA back to topCoding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:15543..17026- >Gcaud8618.t1 ID=Gcaud8618.t1|Name=Gcaud8618.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=921bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:15543..17026- (Gracilaria caudata M_176_S67 male)
ATGTCTTTTCAAAACGCCCAGTGTCAGCCGCGCTTCAAGCCTCTAACCAT
TGGAATTGTTGGCTTCGGAAACTTTGGTCAGTTTCTGGGCAAGAGGTTTG
CGTCGCAAGGTCATCGCGTGATTGGCCAGAGTCGCGGCAATTACTTTGAA
GCTGCTGCTACTATAGGTTGCGAATATGTTCAACGAGCGAACGAGCTCAT
GGACCAAGAGCCAGATGTGGTTATTTTCTGCACAAGTATAATGTCTCTGT
CCACAGTTCTCTCCCATTTTCCGCTCAAAAGACTGGCGAATACGCTAGTG
GTTGATGTGCTTTCCGTCAAGCTGTACCCACATGATCTGCTGCTCAAGTG
TCTACCTTTTTCATCTGATATCATTTGCACGCACCCAATGTTTGGTCCGG
AAAGTGGCAAGGACTCATGGAAGGGTCTGCCATTTGTGTACGACGTTGTT
CGTGTAAATCCCAAACACCAAGCCGTTTGCGACGCTTTCGTTGACATTTG
GAGAACCGAAGGATGTACCATGGTTCCTATGGACTGTGCCACACATGACA
AACACGCAGCGTCAACGCAATTCATCACGCACACAACAGGCCGCATGCTT
GCCCAACTGCATGTTGAATCCACTCCGATCAACACGAAGGGTTACGAATC
GCTGCTTGGTGTGGTGGACACAACCTGCAAGGACAGCTTTGCCTTGTACT
ACGGCTTGTACAAGTACAACCCGAACGCGAGACAGGAGTTGGATAATTTG
GAAGCGGCGCTCAAGGACATAAGGAAAATGCTTGACCTGGCTGAGGACAA
CGAAGCTCAACGAAAAAAAAATGCCAGAAGCATTCGCCTTCCGAGCCCAA
TAGGGCGCACCATGGCCCTTTCTGATGAGGTTTTGCTAAGTCTAATGAAG
CGTGCTGCTCCGCGTGCTTGA back to top
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