Gcaud8624.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8624.t1
Unique NameGcaud8624.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_329_length_29763_cov_4.543981contigNODE_329_length_29763_cov_4.543981:26818..27503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709378.1
Preferred nameMPC2
PFAMsMPC
Max annot lvl2759|Eukaryota
KEGG koko:K14566,ko:K22139
KEGG TC2.A.105.1
KEGG Pathwayko03008,map03008
GOsGO:0002791,GO:0002793,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006848,GO:0006850,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0010646,GO:0010647,GO:0010817,GO:0015075,GO:0015318,GO:0015711,GO:0015718,GO:0015849,GO:0016020,GO:0016021,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022857,GO:0023051,GO:0023056,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032024,GO:0032592,GO:0032787,GO:0032879,GO:0032880,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0035774,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046390,GO:0046483,GO:0046496,GO:0046883,GO:0046887,GO:0046942,GO:0046943,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050833,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051186,GO:0051188,GO:0051222,GO:0051223,GO:0051234,GO:0055085,GO:0055086,GO:0060341,GO:0061178,GO:0061732,GO:0065007,GO:0065008,GO:0070201,GO:0071616,GO:0071702,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090087,GO:0090276,GO:0090277,GO:0090407,GO:0098573,GO:0098656,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901475,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1903825,GO:1904951,GO:1905039,GO:1990542
Evalue9.08e-40
EggNOG OGsKOG1589@1|root,KOG1589@2759|Eukaryota
Descriptionmitochondrial pyruvate transmembrane transport
COG categoryU
BRITEko00000,ko00001,ko02000,ko03009,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8624Gcaud8624Gracilaria caudata M_176_S67 malegeneNODE_329_length_29763_cov_4.543981 26818..27503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8624.t1Gcaud8624.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_329_length_29763_cov_4.543981 26818..27503 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8624.t1.start1Gcaud8624.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_329_length_29763_cov_4.543981 26818..26820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8624.t1.CDS1Gcaud8624.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_329_length_29763_cov_4.543981 26818..26869 +
Gcaud8624.t1.CDS2Gcaud8624.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_329_length_29763_cov_4.543981 27013..27111 +
Gcaud8624.t1.CDS3Gcaud8624.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_329_length_29763_cov_4.543981 27221..27247 +
Gcaud8624.t1.CDS4Gcaud8624.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_329_length_29763_cov_4.543981 27349..27503 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8624.t1.exon1Gcaud8624.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_329_length_29763_cov_4.543981 26818..26869 +
Gcaud8624.t1.exon2Gcaud8624.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_329_length_29763_cov_4.543981 27013..27111 +
Gcaud8624.t1.exon3Gcaud8624.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_329_length_29763_cov_4.543981 27221..27247 +
Gcaud8624.t1.exon4Gcaud8624.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_329_length_29763_cov_4.543981 27349..27503 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8624.t1.intron1Gcaud8624.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_329_length_29763_cov_4.543981 26870..27012 +
Gcaud8624.t1.intron2Gcaud8624.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_329_length_29763_cov_4.543981 27112..27220 +
Gcaud8624.t1.intron3Gcaud8624.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_329_length_29763_cov_4.543981 27248..27348 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8624.t1.stop1Gcaud8624.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_329_length_29763_cov_4.543981 27501..27503 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8624.t1 ID=Gcaud8624.t1|Name=Gcaud8624.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=111bp
MAARLRALWDHPAGMKTVFFWAPTMKWGLVVAGLSDMKRPVENVSVPQCS
ALALTGIVWTRWSFQIIPVNYNLAGANVFVALTNMYQLFRVGKHSFAKSD
KDDSESSPTA*
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spliced messenger RNA

>Gcaud8624.t1 ID=Gcaud8624.t1|Name=Gcaud8624.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=333bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:26818..27503+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCACGACTTAGAGCCTTATGGGACCATCCGGCTGGAATGAAAAC
CGTTTTCTTCTGGGCTCCTACTATGAAGTGGGGCCTTGTGGTTGCCGGTC
TTTCAGATATGAAACGCCCTGTCGAAAATGTTTCAGTTCCACAATGCTCA
GCGCTTGCTCTCACTGGTATAGTTTGGACGCGATGGAGTTTCCAAATCAT
CCCTGTTAACTACAATCTAGCTGGGGCAAATGTCTTCGTAGCTCTTACAA
ATATGTATCAACTTTTCAGAGTTGGAAAGCATTCCTTCGCAAAAAGCGAC
AAGGACGATTCTGAGTCTTCGCCAACAGCTTGA
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protein sequence of Gcaud8624.t1

>Gcaud8624.t1 ID=Gcaud8624.t1|Name=Gcaud8624.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=111bp
MAARLRALWDHPAGMKTVFFWAPTMKWGLVVAGLSDMKRPVENVSVPQCS
ALALTGIVWTRWSFQIIPVNYNLAGANVFVALTNMYQLFRVGKHSFAKSD
KDDSESSPTA*
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mRNA from alignment at NODE_329_length_29763_cov_4.543981:26818..27503+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8624.t1 ID=Gcaud8624.t1|Name=Gcaud8624.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=686bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:26818..27503+ (Gracilaria caudata M_176_S67 male)
ATGGCAGCACGACTTAGAGCCTTATGGGACCATCCGGCTGGAATGAAAAC
CGGTATGTAATGGCACTTCATCAATGGATCGTGAAACGAGAGGTGGGAAC
CACTGAAATCCAATGCGGGCTCCCAGACTTTTGAATTCTTTCAAATAGAT
GGTGTTACGGTCAACTGACAACTTCTTCTTGAACACTTTCTCTAGTTTTC
TTCTGGGCTCCTACTATGAAGTGGGGCCTTGTGGTTGCCGGTCTTTCAGA
TATGAAACGCCCTGTCGAAAATGTTTCAGTTCCACAATGCTCAGGTAAGG
ACAAACATTTAGCATCCCACTCACGACGAAATTTTGTTTCATTGTTTATT
GATGTTAACTAAGTCTGTTTTCTTGTATCATCGCCTTGGTGGATTGTATT
CAGCGCTTGCTCTCACTGGTATAGTTTGGAGTAAGTGCAACGCTGGAATC
TTGTGTTCAAGACACTTTTCGAGAGCAAACGTACTGACCAATTGATCTTC
GACCAATCTTCATGGCTTATTTGATATTCAGCGCGATGGAGTTTCCAAAT
CATCCCTGTTAACTACAATCTAGCTGGGGCAAATGTCTTCGTAGCTCTTA
CAAATATGTATCAACTTTTCAGAGTTGGAAAGCATTCCTTCGCAAAAAGC
GACAAGGACGATTCTGAGTCTTCGCCAACAGCTTGA
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Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:26818..27503+

>Gcaud8624.t1 ID=Gcaud8624.t1|Name=Gcaud8624.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=333bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:26818..27503+ (Gracilaria caudata M_176_S67 male)
ATGGCAGCACGACTTAGAGCCTTATGGGACCATCCGGCTGGAATGAAAAC
CGTTTTCTTCTGGGCTCCTACTATGAAGTGGGGCCTTGTGGTTGCCGGTC
TTTCAGATATGAAACGCCCTGTCGAAAATGTTTCAGTTCCACAATGCTCA
GCGCTTGCTCTCACTGGTATAGTTTGGACGCGATGGAGTTTCCAAATCAT
CCCTGTTAACTACAATCTAGCTGGGGCAAATGTCTTCGTAGCTCTTACAA
ATATGTATCAACTTTTCAGAGTTGGAAAGCATTCCTTCGCAAAAAGCGAC
AAGGACGATTCTGAGTCTTCGCCAACAGCTTGA
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