Gcaud8623.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8623.t1
Unique NameGcaud8623.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_329_length_29763_cov_4.543981contigNODE_329_length_29763_cov_4.543981:25360..26454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8623Gcaud8623Gracilaria caudata M_176_S67 malegeneNODE_329_length_29763_cov_4.543981 25360..26454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8623.t1Gcaud8623.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_329_length_29763_cov_4.543981 25360..26454 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8623.t1.stop1Gcaud8623.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_329_length_29763_cov_4.543981 25360..25362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8623.t1.CDS1Gcaud8623.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_329_length_29763_cov_4.543981 25360..26199 -
Gcaud8623.t1.CDS2Gcaud8623.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_329_length_29763_cov_4.543981 26280..26367 -
Gcaud8623.t1.CDS3Gcaud8623.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_329_length_29763_cov_4.543981 26438..26454 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8623.t1.exon1Gcaud8623.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_329_length_29763_cov_4.543981 25360..26199 -
Gcaud8623.t1.exon2Gcaud8623.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_329_length_29763_cov_4.543981 26280..26367 -
Gcaud8623.t1.exon3Gcaud8623.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_329_length_29763_cov_4.543981 26438..26454 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8623.t1.intron1Gcaud8623.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_329_length_29763_cov_4.543981 26200..26279 -
Gcaud8623.t1.intron2Gcaud8623.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_329_length_29763_cov_4.543981 26368..26437 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8623.t1.start1Gcaud8623.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_329_length_29763_cov_4.543981 26452..26454 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8623.t1 ID=Gcaud8623.t1|Name=Gcaud8623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=315bp
MPHEMQRGCLTGEIKRVIASLFPRSDCNYLRSYPEQSPQTNVVITEVYAF
YIMSFSNATTQTGSERGHLDSQLKQGSLRFRACFLLHPIPGRTRSSLSNT
SLQSIDTCPRRRNFVRPTDPRTSIVRCKQADGTANPSELEGEIREVYERS
IRENPIVKTELQDSDRRVMDDITATGAAKMNEIVSNMKEDLKGIQEEAAE
RAAAMIQEESDLLLEKYEQKRLDILDRVKSDRQVIKDELTKLESLAGDMK
KGGTGGKKPMTEKLLLASTTAFSVAALFYAWNGFVNSDASALSNAAIDAI
VAAAAGYFASRRRT*
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spliced messenger RNA

>Gcaud8623.t1 ID=Gcaud8623.t1|Name=Gcaud8623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=945bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:25360..26454- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCATGAAATGCAACGCGGCTGCCTTACGGGGGAGATCAAGCGAGT
AATCGCATCGCTCTTTCCACGTTCGGACTGCAATTACCTACGTTCGTACC
CAGAACAATCACCACAAACAAACGTCGTCATCACGGAAGTGTACGCTTTT
TATATAATGAGCTTCTCAAACGCCACAACTCAAACTGGCTCTGAAAGAGG
GCACCTCGATTCCCAATTGAAACAAGGCTCGTTGAGATTCAGAGCTTGCT
TTTTGCTCCATCCGATACCTGGTCGCACGCGGTCCTCTCTTAGCAATACA
AGTCTGCAGTCCATTGACACATGCCCGAGAAGAAGAAATTTCGTGAGACC
GACAGACCCTAGAACTTCTATTGTGCGATGTAAGCAGGCGGATGGCACAG
CGAACCCTTCGGAATTGGAAGGCGAGATACGAGAAGTGTACGAACGTTCC
ATACGAGAGAATCCCATCGTTAAAACAGAACTTCAAGATTCGGACCGACG
AGTGATGGACGACATCACCGCGACTGGAGCCGCCAAAATGAATGAAATAG
TGAGCAACATGAAGGAGGATTTAAAAGGGATACAAGAAGAAGCGGCAGAA
CGCGCAGCAGCAATGATACAAGAAGAAAGTGATTTATTGCTGGAGAAGTA
TGAGCAAAAGCGGCTCGATATTCTTGATAGGGTGAAGAGCGACCGTCAAG
TTATTAAAGATGAACTCACAAAACTCGAAAGTTTGGCAGGAGATATGAAG
AAAGGGGGAACCGGAGGCAAAAAGCCAATGACAGAGAAGCTCCTATTGGC
TTCCACAACGGCTTTCAGTGTGGCTGCACTGTTTTACGCTTGGAACGGGT
TTGTGAACTCCGACGCTTCCGCATTATCCAACGCAGCTATAGACGCTATT
GTCGCGGCTGCTGCAGGGTACTTCGCGTCTCGCAGAAGGACTTGA
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protein sequence of Gcaud8623.t1

>Gcaud8623.t1 ID=Gcaud8623.t1|Name=Gcaud8623.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=315bp
MPHEMQRGCLTGEIKRVIASLFPRSDCNYLRSYPEQSPQTNVVITEVYAF
YIMSFSNATTQTGSERGHLDSQLKQGSLRFRACFLLHPIPGRTRSSLSNT
SLQSIDTCPRRRNFVRPTDPRTSIVRCKQADGTANPSELEGEIREVYERS
IRENPIVKTELQDSDRRVMDDITATGAAKMNEIVSNMKEDLKGIQEEAAE
RAAAMIQEESDLLLEKYEQKRLDILDRVKSDRQVIKDELTKLESLAGDMK
KGGTGGKKPMTEKLLLASTTAFSVAALFYAWNGFVNSDASALSNAAIDAI
VAAAAGYFASRRRT*
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mRNA from alignment at NODE_329_length_29763_cov_4.543981:25360..26454-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8623.t1 ID=Gcaud8623.t1|Name=Gcaud8623.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:25360..26454- (Gracilaria caudata M_176_S67 male)
ATGCCTCATGAAATGCAGTTTGCAATTTGCAAATCCGAAACAAAAAAATC
CCGAGTGCGGCGATGCTGTGTAACGCCAACCTCGTAGACGCGGCTGCCTT
ACGGGGGAGATCAAGCGAGTAATCGCATCGCTCTTTCCACGTTCGGACTG
CAATTACCTACGTTCGTACCCAGAAGTGCGTTTCAAACACCCAAGACACC
TCTTTATGAACTGCGGGCTGATGTGTTGAGATTCTTTTCTTTTGGTTGAG
GCAAGCAATCACCACAAACAAACGTCGTCATCACGGAAGTGTACGCTTTT
TATATAATGAGCTTCTCAAACGCCACAACTCAAACTGGCTCTGAAAGAGG
GCACCTCGATTCCCAATTGAAACAAGGCTCGTTGAGATTCAGAGCTTGCT
TTTTGCTCCATCCGATACCTGGTCGCACGCGGTCCTCTCTTAGCAATACA
AGTCTGCAGTCCATTGACACATGCCCGAGAAGAAGAAATTTCGTGAGACC
GACAGACCCTAGAACTTCTATTGTGCGATGTAAGCAGGCGGATGGCACAG
CGAACCCTTCGGAATTGGAAGGCGAGATACGAGAAGTGTACGAACGTTCC
ATACGAGAGAATCCCATCGTTAAAACAGAACTTCAAGATTCGGACCGACG
AGTGATGGACGACATCACCGCGACTGGAGCCGCCAAAATGAATGAAATAG
TGAGCAACATGAAGGAGGATTTAAAAGGGATACAAGAAGAAGCGGCAGAA
CGCGCAGCAGCAATGATACAAGAAGAAAGTGATTTATTGCTGGAGAAGTA
TGAGCAAAAGCGGCTCGATATTCTTGATAGGGTGAAGAGCGACCGTCAAG
TTATTAAAGATGAACTCACAAAACTCGAAAGTTTGGCAGGAGATATGAAG
AAAGGGGGAACCGGAGGCAAAAAGCCAATGACAGAGAAGCTCCTATTGGC
TTCCACAACGGCTTTCAGTGTGGCTGCACTGTTTTACGCTTGGAACGGGT
TTGTGAACTCCGACGCTTCCGCATTATCCAACGCAGCTATAGACGCTATT
GTCGCGGCTGCTGCAGGGTACTTCGCGTCTCGCAGAAGGACTTGA
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Coding sequence (CDS) from alignment at NODE_329_length_29763_cov_4.543981:25360..26454-

>Gcaud8623.t1 ID=Gcaud8623.t1|Name=Gcaud8623.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=945bp|location=Sequence derived from alignment at NODE_329_length_29763_cov_4.543981:25360..26454- (Gracilaria caudata M_176_S67 male)
ATGCCTCATGAAATGCAACGCGGCTGCCTTACGGGGGAGATCAAGCGAGT
AATCGCATCGCTCTTTCCACGTTCGGACTGCAATTACCTACGTTCGTACC
CAGAACAATCACCACAAACAAACGTCGTCATCACGGAAGTGTACGCTTTT
TATATAATGAGCTTCTCAAACGCCACAACTCAAACTGGCTCTGAAAGAGG
GCACCTCGATTCCCAATTGAAACAAGGCTCGTTGAGATTCAGAGCTTGCT
TTTTGCTCCATCCGATACCTGGTCGCACGCGGTCCTCTCTTAGCAATACA
AGTCTGCAGTCCATTGACACATGCCCGAGAAGAAGAAATTTCGTGAGACC
GACAGACCCTAGAACTTCTATTGTGCGATGTAAGCAGGCGGATGGCACAG
CGAACCCTTCGGAATTGGAAGGCGAGATACGAGAAGTGTACGAACGTTCC
ATACGAGAGAATCCCATCGTTAAAACAGAACTTCAAGATTCGGACCGACG
AGTGATGGACGACATCACCGCGACTGGAGCCGCCAAAATGAATGAAATAG
TGAGCAACATGAAGGAGGATTTAAAAGGGATACAAGAAGAAGCGGCAGAA
CGCGCAGCAGCAATGATACAAGAAGAAAGTGATTTATTGCTGGAGAAGTA
TGAGCAAAAGCGGCTCGATATTCTTGATAGGGTGAAGAGCGACCGTCAAG
TTATTAAAGATGAACTCACAAAACTCGAAAGTTTGGCAGGAGATATGAAG
AAAGGGGGAACCGGAGGCAAAAAGCCAATGACAGAGAAGCTCCTATTGGC
TTCCACAACGGCTTTCAGTGTGGCTGCACTGTTTTACGCTTGGAACGGGT
TTGTGAACTCCGACGCTTCCGCATTATCCAACGCAGCTATAGACGCTATT
GTCGCGGCTGCTGCAGGGTACTTCGCGTCTCGCAGAAGGACTTGA
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