Gcaud3038.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3038.t1
Unique NameGcaud3038.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length258
Homology
BLAST of Gcaud3038.t1 vs. uniprot
Match: A0A2V3IDE1_9FLOR (50S ribosomal protein L15 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDE1_9FLOR)

HSP 1 Score: 424 bits (1089), Expect = 1.620e-148
Identity = 204/232 (87.93%), Postives = 216/232 (93.10%), Query Frame = 0
Query:    1 MQPAFVAPLGGAPKFTTYVGLRSSTCRLPARPPVAARPVHRVTPTAKIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTTGKDIVFD 232
            MQP FVAPLG APK  TY+GLR STCRLP RPP  ARP  RV+PTAKIFDWKKRQDPDY KLPEEDDGI+KFTNL+PAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRR+PKFVGRP GPGHKKT+YAL+KIEHLNGCEEGEIVTFEG+KEKGI+TKQK KI+KVVGG ELTV+NLTV+AHAFTTSAVEAIEGAGG CVLISPTTGKDIV D
Sbjct:    1 MQPTFVAPLGRAPKHPTYIGLRPSTCRLPTRPPATARPASRVSPTAKIFDWKKRQDPDYNKLPEEDDGIFKFTNLRPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRIPKFVGRPTGPGHKKTEYALLKIEHLNGCEEGEIVTFEGMKEKGIVTKQKRKIYKVVGGAELTVQNLTVKAHAFTTSAVEAIEGAGGTCVLISPTTGKDIVLD 232          
BLAST of Gcaud3038.t1 vs. uniprot
Match: R7QRC1_CHOCR (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRC1_CHOCR)

HSP 1 Score: 364 bits (934), Expect = 5.230e-125
Identity = 185/248 (74.60%), Postives = 207/248 (83.47%), Query Frame = 0
Query:    1 MQPAFVAPLGGAP--KFTTYVGLRSSTCRLPARPPVAARPVHRVTPTAKIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTTGKDIVFDDEEEQDIVDESSSE 246
            MQPAF AP  GAP  K  +YVGLR   C L ARP  A     RVTPTAK+FDWKKRQD  Y  LP ED+GI+  TNL+PAPGSR RKKRKGRG +AGQG  CGFGMRGQKSRSGR VRPGFEGGQTPLYRR+PKFVGRPMGPGHKKT+YALMKIE LNGCEEG +VTFEGLK  GIMTKQK KI+KVVGG +LTV+NLTV+AHAFTTSAV+AIEGAGG CVL+SPTTGKDIVF++EE++++  ES +E
Sbjct:    1 MQPAF-APSLGAPRAKHVSYVGLRPRACPLRARPSTAVSA--RVTPTAKLFDWKKRQDATYADLPPEDEGIFTLTNLRPAPGSRKRKKRKGRGHSAGQGGSCGFGMRGQKSRSGRGVRPGFEGGQTPLYRRIPKFVGRPMGPGHKKTEYALMKIEFLNGCEEGSVVTFEGLKAMGIMTKQKRKIYKVVGGEDLTVKNLTVKAHAFTTSAVDAIEGAGGTCVLVSPTTGKDIVFEEEEDEEVATESETE 245          
BLAST of Gcaud3038.t1 vs. uniprot
Match: A0A7S0G633_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G633_9RHOD)

HSP 1 Score: 265 bits (676), Expect = 6.940e-86
Identity = 145/231 (62.77%), Postives = 165/231 (71.43%), Query Frame = 0
Query:   18 YVGLRSSTCRLPARP-PVAARPVHRVTPTAKIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGT-ELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTTGKDIVFDDEEEQDIVDESSSE 246
            Y GLR +   L   P P+        T   KIFDWKKR     G+  E + G   FT LKPAPGS  RKKRKGRG +AGQG  CGFGMRGQKSRSGR  RPGFEGGQ PLYRR+PK+VGRPMGPGH  TKY L+KIE LN  EEG +VT E L+  GI+TK KLK+ KVVGG  ELTV+NLTV+AHAFTTSAV AIE AGGKC L++PTT +D+  DD+EE + V ESS E
Sbjct:   20 YCGLRRNADGLSVAPRPIGESTGGAATVHMKIFDWKKR-----GQSGEMEIGEMSFTTLKPAPGSNQRKKRKGRGHSAGQGGSCGFGMRGQKSRSGRPSRPGFEGGQNPLYRRVPKYVGRPMGPGHSYTKYGLLKIEDLNKAEEGTVVTQESLQAAGIVTKNKLKLTKVVGGNVELTVKNLTVKAHAFTTSAVAAIEAAGGKCQLLNPTTNEDLDMDDDEEIEEVSESSEE 245          
BLAST of Gcaud3038.t1 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP)

HSP 1 Score: 255 bits (652), Expect = 1.620e-82
Identity = 129/188 (68.62%), Postives = 146/188 (77.66%), Query Frame = 0
Query:   42 VTPTAKIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTTGKDI 229
            V P+ K+FDWKKR    Y    E   G    T + PAPGSR RK RKGRG AAGQG  CGFGMRGQKSRSG   RPGFEGGQTPLYRRLPK+VGRPMGPGH KT Y L+K++ LN C EGE+VTF+ L E G MTK K K+ K++GG ELTV+NLTV+AHAFT+SAVEAIE AGGKCVL+SPTTG+DI
Sbjct:   35 VAPSMKVFDWKKRGAEAYSGRAEM--GEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDI 220          
BLAST of Gcaud3038.t1 vs. uniprot
Match: A0A1X6NTT1_PORUM (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTT1_PORUM)

HSP 1 Score: 234 bits (598), Expect = 4.460e-74
Identity = 132/236 (55.93%), Postives = 156/236 (66.10%), Query Frame = 0
Query:    2 QPAFVAPLGGAPKF-TTYVGLRSSTCRLPARPPVA----------ARPVHR--VTPTAKIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPT 224
            +PAF A    AP+    Y GL  S   + +  P A          A P      TPTAK+FDWKKR D +Y  +   +  I+  +NL+PAPGS HRKKRKGRGDAAGQGA CGFGMRGQKSRSGR  R GFEGGQTPLYRRLPK+VGRPMGPGH K +YAL+K+  LN  E+ +    E L+E G +TK   K  KVVGG +LT + LTV+AHAFT SA EAIEG GG CV++  T
Sbjct:    5 KPAFAA---AAPRVGAAYTGLARSAAGVCSTRPAAXXXXXXXXRVATPPRTGTATPTAKLFDWKKRADENYAVV---EGDIWTLSNLRPAPGSAHRKKRKGRGDAAGQGASCGFGMRGQKSRSGRPTRAGFEGGQTPLYRRLPKYVGRPMGPGHTKKEYALIKLSTLNCVEDNKEADAEKLREAGALTKSCHKYSKVVGGEDLTAKGLTVKAHAFTKSAREAIEGNGGNCVVLPKT 234          
BLAST of Gcaud3038.t1 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA)

HSP 1 Score: 234 bits (596), Expect = 5.170e-74
Identity = 119/183 (65.03%), Postives = 138/183 (75.41%), Query Frame = 0
Query:   45 TAKIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGT-ELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTTG 226
            T K+FDWK+R+  D   + + ++ ++   NLKPAPGSRHRKKRKGRG AAGQGA CGFGMRGQKSRSGR  R GFEGGQ PLYRRLPKFVG+PMGPGH KT Y L+K++ LNG  EG  V F  L E G +TK K+ I KVV G  E T + L V+AHAFT+SA  AIEGAGGKC L+SPTTG
Sbjct:   38 TMKVFDWKRRE-ADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTG 219          
BLAST of Gcaud3038.t1 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA)

HSP 1 Score: 232 bits (591), Expect = 2.960e-73
Identity = 121/192 (63.02%), Postives = 141/192 (73.44%), Query Frame = 0
Query:   40 HRVT----PTAKIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGT-ELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTTG 226
            HRV+    PT K+FDWK+R+  D   + + +  ++   NLKPAPGSRHRKKRKGRG AAGQGA CGFGMRGQKSRSGR  R GFEGGQ PLYRRLPKFVG+PMGPGH KT Y L+K + +NG  EG  V+F  L E G +TK K  I KVV G  E + + +TV+AHAFT SA  AIEGAGGKC L+SPTTG
Sbjct:   29 HRVSTATGPTMKVFDWKRRE-ADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTG 219          
BLAST of Gcaud3038.t1 vs. uniprot
Match: A0A7S2W8A4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8A4_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.220e-70
Identity = 120/210 (57.14%), Postives = 145/210 (69.05%), Query Frame = 0
Query:   21 LRSSTCRLPARPPVAARPVHRVTP-----TAKIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTT 225
            L  S+ RL A P       HR +P     T K+FDWK+R+  D       D  ++   NL+PAPGS+  K RKGRG AAGQGA CGFGMRGQKSRSGR  RPGFEGGQTPLYRRLPK+VG+P+GPGHK+T+Y  +K+E LN   EG  V FE L+E   + K +  + KVVGG ELT ++LTV+AHAFT +A EAIE  GGKCV +SPTT
Sbjct:   23 LVQSSSRLVAAP-------HRSSPRSNTLTMKVFDWKRRE-ADESAFANVDSVVFTMDNLRPAPGSKKSKTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKYVGKPLGPGHKRTQYNPIKLELLNSLPEGSTVNFEALREAKALPKCRFDLHKVVGGGELTTKSLTVQAHAFTGTAREAIESNGGKCVTLSPTT 224          
BLAST of Gcaud3038.t1 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 1.910e-70
Identity = 120/198 (60.61%), Postives = 139/198 (70.20%), Query Frame = 0
Query:   45 TAKIFDWKKRQDPDYGKLPEEDDGIY----KFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTTGKDIVFDDEEEQD 238
            T KIFDWK+R         E +DG+         LKPAPGSR R KRKGRG AAGQGA CGFGMRGQKSRSG  VR GFEGGQ PLYRRLPK VGRPMGPGH K ++ L+K++ LNG +EG  V FE L+  G +TK K +  KVVGG EL    LTV+AH FT SAVEAIE  GGKC L+SPTT + +  D+EEE++
Sbjct:   45 TMKIFDWKRR---------ESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEEE 233          
BLAST of Gcaud3038.t1 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA)

HSP 1 Score: 223 bits (568), Expect = 8.980e-70
Identity = 116/181 (64.09%), Postives = 132/181 (72.93%), Query Frame = 0
Query:   47 KIFDWKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARCGFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALMKIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRAHAFTTSAVEAIEGAGGKCVLISPTTGK 227
            KIFDWK+R D       +E         L P+PGSRHRK RKGRG +AGQGA CGFGMRGQ+SRSG  VR GFEGGQ PLYRRLPKFVGRPMGPGH K ++ L+ +E LN   EG  V+FE L E+G +TK  LK  KVVG  EL V+NLTV+AHAFT SA EAIEGAGGKC L+SPTT +
Sbjct:   45 KIFDWKRRDDDSANTAVKE----LSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNE 221          
The following BLAST results are available for this feature:
BLAST of Gcaud3038.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IDE1_9FLOR1.620e-14887.9350S ribosomal protein L15 n=1 Tax=Gracilariopsis c... [more]
R7QRC1_CHOCR5.230e-12574.60Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A7S0G633_9RHOD6.940e-8662.77Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z048_PORPP1.620e-8268.6250S ribosomal protein L15 n=1 Tax=Porphyridium pur... [more]
A0A1X6NTT1_PORUM4.460e-7455.93Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A7S1BKP2_9STRA5.170e-7465.03Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1BF06_9STRA2.960e-7363.02Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2W8A4_9STRA1.220e-7057.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FKW4_ECTSI1.910e-7060.61Chloroplast 50S ribosomal protein L15 n=1 Tax=Ecto... [more]
A0A836CHQ3_9STRA8.980e-7064.09Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.100.10.10coord: 141..222
e-value: 3.4E-15
score: 57.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..257
NoneNo IPR availablePANTHERPTHR12934:SF1139S RIBOSOMAL PROTEIN L15, MITOCHONDRIALcoord: 70..218
IPR021131Ribosomal protein L18e/L15PPFAMPF00828Ribosomal_L27Acoord: 96..219
e-value: 8.5E-28
score: 97.4
IPR005749Ribosomal protein L15, bacterial-typeTIGRFAMTIGR01071TIGR01071coord: 71..218
e-value: 1.7E-36
score: 123.2
IPR005749Ribosomal protein L15, bacterial-typePANTHERPTHR1293450S RIBOSOMAL PROTEIN L15coord: 70..218
IPR001196Ribosomal protein L15, conserved sitePROSITEPS00475RIBOSOMAL_L15coord: 184..215
IPR030878Ribosomal protein L15HAMAPMF_01341Ribosomal_L15coord: 72..221
score: 17.19989
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 74..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_328_length_29789_cov_4.262846contigNODE_328_length_29789_cov_4.262846:17626..18399 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3038.t1Gcaud3038.t1Gracilaria caudata M_176_S67 malemRNANODE_328_length_29789_cov_4.262846 17626..18399 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3038.t1 ID=Gcaud3038.t1|Name=Gcaud3038.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MQPAFVAPLGGAPKFTTYVGLRSSTCRLPARPPVAARPVHRVTPTAKIFD
WKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARC
GFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALM
KIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRA
HAFTTSAVEAIEGAGGKCVLISPTTGKDIVFDDEEEQDIVDESSSEGDGD
SETETEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021131Ribosomal_L18e/L15P
IPR005749Ribosomal_L15_bac-type
IPR001196Ribosomal_L15_CS
IPR030878Ribosomal_L15
IPR036227L18e/L15P_sf