Gcaud3038.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3038.t1
Unique NameGcaud3038.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_328_length_29789_cov_4.262846contigNODE_328_length_29789_cov_4.262846:17626..18399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FKW4
Preferred namePRPL15
PFAMsRibosomal_L27A
Max annot lvl2759|Eukaryota
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000311,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0019538,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue2.68e-70
EggNOG OGsCOG0200@1|root,KOG0846@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3038Gcaud3038Gracilaria caudata M_176_S67 malegeneNODE_328_length_29789_cov_4.262846 17626..18399 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3038.t1.stop1Gcaud3038.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_328_length_29789_cov_4.262846 17626..17628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3038.t1.CDS1Gcaud3038.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_328_length_29789_cov_4.262846 17626..18399 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3038.t1.exon1Gcaud3038.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_328_length_29789_cov_4.262846 17626..18399 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3038.t1.start1Gcaud3038.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_328_length_29789_cov_4.262846 18397..18399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3038.t1Gcaud3038.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_328_length_29789_cov_4.262846 17626..18399 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3038.t1 ID=Gcaud3038.t1|Name=Gcaud3038.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MQPAFVAPLGGAPKFTTYVGLRSSTCRLPARPPVAARPVHRVTPTAKIFD
WKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARC
GFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALM
KIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRA
HAFTTSAVEAIEGAGGKCVLISPTTGKDIVFDDEEEQDIVDESSSEGDGD
SETETEA*
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spliced messenger RNA

>Gcaud3038.t1 ID=Gcaud3038.t1|Name=Gcaud3038.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:17626..18399- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCAGCGTTCGTGGCGCCCCTTGGCGGCGCACCGAAGTTCACCAC
CTACGTTGGCCTTCGTTCTTCCACCTGTCGTCTCCCAGCGCGCCCACCAG
TGGCGGCGCGTCCCGTGCACCGCGTCACGCCCACCGCGAAGATCTTCGAC
TGGAAGAAGCGACAGGACCCCGATTACGGTAAGCTTCCTGAGGAAGATGA
CGGCATTTACAAGTTCACCAATCTGAAGCCAGCGCCGGGCTCTCGTCATC
GCAAGAAGCGCAAAGGGCGTGGTGACGCCGCTGGGCAGGGTGCGCGATGC
GGTTTTGGCATGCGCGGACAGAAGAGTCGTTCTGGTCGCTCCGTACGTCC
AGGTTTTGAAGGTGGTCAAACACCGTTGTACAGACGATTGCCTAAGTTCG
TGGGCAGGCCAATGGGGCCTGGTCATAAGAAAACCAAGTACGCTCTCATG
AAGATCGAGCACTTGAACGGCTGCGAGGAAGGGGAGATTGTGACTTTTGA
GGGCTTGAAGGAAAAGGGAATTATGACTAAACAGAAGCTTAAGATCTGGA
AGGTGGTCGGTGGAACTGAGTTGACAGTGCGAAATCTAACTGTTAGGGCG
CATGCGTTCACTACGTCGGCTGTGGAGGCTATCGAGGGTGCCGGCGGTAA
ATGCGTTTTAATTTCTCCAACCACAGGAAAGGACATTGTTTTTGACGACG
AAGAAGAGCAGGATATTGTTGACGAAAGCAGCTCAGAGGGAGACGGGGAC
TCCGAAACAGAAACAGAGGCGTAA
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protein sequence of Gcaud3038.t1

>Gcaud3038.t1 ID=Gcaud3038.t1|Name=Gcaud3038.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MQPAFVAPLGGAPKFTTYVGLRSSTCRLPARPPVAARPVHRVTPTAKIFD
WKKRQDPDYGKLPEEDDGIYKFTNLKPAPGSRHRKKRKGRGDAAGQGARC
GFGMRGQKSRSGRSVRPGFEGGQTPLYRRLPKFVGRPMGPGHKKTKYALM
KIEHLNGCEEGEIVTFEGLKEKGIMTKQKLKIWKVVGGTELTVRNLTVRA
HAFTTSAVEAIEGAGGKCVLISPTTGKDIVFDDEEEQDIVDESSSEGDGD
SETETEA*
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mRNA from alignment at NODE_328_length_29789_cov_4.262846:17626..18399-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3038.t1 ID=Gcaud3038.t1|Name=Gcaud3038.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:17626..18399- (Gracilaria caudata M_176_S67 male)
ATGCAGCCAGCGTTCGTGGCGCCCCTTGGCGGCGCACCGAAGTTCACCAC
CTACGTTGGCCTTCGTTCTTCCACCTGTCGTCTCCCAGCGCGCCCACCAG
TGGCGGCGCGTCCCGTGCACCGCGTCACGCCCACCGCGAAGATCTTCGAC
TGGAAGAAGCGACAGGACCCCGATTACGGTAAGCTTCCTGAGGAAGATGA
CGGCATTTACAAGTTCACCAATCTGAAGCCAGCGCCGGGCTCTCGTCATC
GCAAGAAGCGCAAAGGGCGTGGTGACGCCGCTGGGCAGGGTGCGCGATGC
GGTTTTGGCATGCGCGGACAGAAGAGTCGTTCTGGTCGCTCCGTACGTCC
AGGTTTTGAAGGTGGTCAAACACCGTTGTACAGACGATTGCCTAAGTTCG
TGGGCAGGCCAATGGGGCCTGGTCATAAGAAAACCAAGTACGCTCTCATG
AAGATCGAGCACTTGAACGGCTGCGAGGAAGGGGAGATTGTGACTTTTGA
GGGCTTGAAGGAAAAGGGAATTATGACTAAACAGAAGCTTAAGATCTGGA
AGGTGGTCGGTGGAACTGAGTTGACAGTGCGAAATCTAACTGTTAGGGCG
CATGCGTTCACTACGTCGGCTGTGGAGGCTATCGAGGGTGCCGGCGGTAA
ATGCGTTTTAATTTCTCCAACCACAGGAAAGGACATTGTTTTTGACGACG
AAGAAGAGCAGGATATTGTTGACGAAAGCAGCTCAGAGGGAGACGGGGAC
TCCGAAACAGAAACAGAGGCGTAA
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Coding sequence (CDS) from alignment at NODE_328_length_29789_cov_4.262846:17626..18399-

>Gcaud3038.t1 ID=Gcaud3038.t1|Name=Gcaud3038.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_328_length_29789_cov_4.262846:17626..18399- (Gracilaria caudata M_176_S67 male)
ATGCAGCCAGCGTTCGTGGCGCCCCTTGGCGGCGCACCGAAGTTCACCAC
CTACGTTGGCCTTCGTTCTTCCACCTGTCGTCTCCCAGCGCGCCCACCAG
TGGCGGCGCGTCCCGTGCACCGCGTCACGCCCACCGCGAAGATCTTCGAC
TGGAAGAAGCGACAGGACCCCGATTACGGTAAGCTTCCTGAGGAAGATGA
CGGCATTTACAAGTTCACCAATCTGAAGCCAGCGCCGGGCTCTCGTCATC
GCAAGAAGCGCAAAGGGCGTGGTGACGCCGCTGGGCAGGGTGCGCGATGC
GGTTTTGGCATGCGCGGACAGAAGAGTCGTTCTGGTCGCTCCGTACGTCC
AGGTTTTGAAGGTGGTCAAACACCGTTGTACAGACGATTGCCTAAGTTCG
TGGGCAGGCCAATGGGGCCTGGTCATAAGAAAACCAAGTACGCTCTCATG
AAGATCGAGCACTTGAACGGCTGCGAGGAAGGGGAGATTGTGACTTTTGA
GGGCTTGAAGGAAAAGGGAATTATGACTAAACAGAAGCTTAAGATCTGGA
AGGTGGTCGGTGGAACTGAGTTGACAGTGCGAAATCTAACTGTTAGGGCG
CATGCGTTCACTACGTCGGCTGTGGAGGCTATCGAGGGTGCCGGCGGTAA
ATGCGTTTTAATTTCTCCAACCACAGGAAAGGACATTGTTTTTGACGACG
AAGAAGAGCAGGATATTGTTGACGAAAGCAGCTCAGAGGGAGACGGGGAC
TCCGAAACAGAAACAGAGGCGTAA
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