Gcaud3274.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3274.t1
Unique Name	Gcaud3274.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	370

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_327_length_29891_cov_4.655638	contig	NODE_327_length_29891_cov_4.655638:19468..20577 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_5989
Preferred name	amgP
PFAMs	APH
Max annot lvl	2\|Bacteria
Evalue	4.28e-17
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria
Description	very-long-chain-acyl-CoA dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3274	Gcaud3274	Gracilaria caudata M_176_S67 male	gene	NODE_327_length_29891_cov_4.655638 19468..20577 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3274.t1.start1	Gcaud3274.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_327_length_29891_cov_4.655638 19468..19470 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3274.t1.CDS1	Gcaud3274.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_327_length_29891_cov_4.655638 19468..20577 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3274.t1.exon1	Gcaud3274.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_327_length_29891_cov_4.655638 19468..20577 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3274.t1.stop1	Gcaud3274.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_327_length_29891_cov_4.655638 20575..20577 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3274.t1	Gcaud3274.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_327_length_29891_cov_4.655638 19468..20577 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_327_length_29891_cov_4.655638:19468..20577+
coding sequence from alignment at NODE_327_length_29891_cov_4.655638:19468..20577+

mRNA sequence

>Gcaud3274.t1 ID=Gcaud3274.t1|Name=Gcaud3274.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=370bp
MPKNCKWIQRSSVDEIAVDPPSQTITAYLEKYKLRGLNLEGEKLHSFSRT
GWLKRASRWINEKLNDSGYDVESIEKLQHGHGSCVVRVRVSSSMVFYMKC
SNRIGWWNEVRVTQALGEVMPEEFETPFAVDVDLGWMLTRDYGKTLPYRV
FETDVDLAKRVMWRWAEIQKKSISKVEELQERGVAKMDGEALKSAIDRAM
GNPLWFKAQREGMNEEQLERYNDECEYKNEYRAYLQRLFDNVGEYNVPLG
IVHGDLNSVNVIVQGDKSFTFLDMFYTQISFPFLDVILLPLICGSSFEDF
DLDFYLEHWTEYESMERLRELLMLVGEVRSVESVASRIFAFENGEDHERE
EHYMELRFPVCRTFDYHKD*

spliced messenger RNA

>Gcaud3274.t1 ID=Gcaud3274.t1|Name=Gcaud3274.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:19468..20577+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAAAACTGCAAATGGATACAGCGGTCTTCTGTTGACGAAATCGC
GGTTGATCCTCCTTCGCAAACGATTACGGCCTATCTGGAAAAGTACAAGT
TACGGGGACTGAATTTAGAGGGTGAAAAGCTACATTCATTCTCACGCACA
GGTTGGCTTAAGCGTGCAAGTAGATGGATCAATGAGAAGTTGAATGATAG
TGGATATGACGTGGAGAGTATCGAAAAGCTCCAACATGGTCATGGAAGCT
GCGTTGTAAGAGTGAGGGTTAGCTCGAGCATGGTCTTCTACATGAAGTGT
TCAAATCGCATAGGGTGGTGGAATGAGGTGAGAGTGACACAGGCACTGGG
TGAGGTGATGCCAGAAGAGTTTGAAACGCCGTTTGCGGTTGACGTAGATC
TTGGGTGGATGCTGACACGAGACTATGGAAAGACTCTTCCGTACAGAGTA
TTCGAGACGGACGTGGATCTGGCAAAGAGGGTGATGTGGCGTTGGGCCGA
AATCCAGAAGAAATCTATATCAAAAGTTGAAGAATTGCAGGAGCGGGGAG
TGGCAAAAATGGATGGGGAGGCGCTTAAATCGGCGATTGATCGAGCTATG
GGGAATCCGCTTTGGTTCAAAGCTCAGCGAGAGGGAATGAACGAGGAGCA
GTTAGAGCGGTACAATGATGAATGTGAATATAAGAATGAGTATCGGGCGT
ACTTGCAACGGTTGTTTGACAACGTTGGGGAGTACAATGTGCCGTTAGGA
ATTGTCCATGGGGACTTGAATTCCGTGAACGTTATTGTACAGGGAGACAA
AAGCTTCACCTTTCTCGATATGTTCTACACCCAAATTTCGTTTCCATTTC
TAGATGTAATACTGCTTCCTCTTATATGCGGATCGAGTTTTGAAGATTTC
GATCTTGACTTTTATCTGGAGCATTGGACAGAGTATGAGAGTATGGAAAG
GCTGCGAGAACTGCTGATGCTCGTTGGAGAGGTAAGAAGTGTTGAAAGTG
TGGCATCTAGAATTTTTGCTTTTGAGAATGGGGAAGATCATGAAAGGGAA
GAGCACTACATGGAATTGAGATTTCCGGTTTGTCGTACGTTTGATTATCA
CAAAGACTGA

protein sequence of Gcaud3274.t1

>Gcaud3274.t1 ID=Gcaud3274.t1|Name=Gcaud3274.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=370bp
MPKNCKWIQRSSVDEIAVDPPSQTITAYLEKYKLRGLNLEGEKLHSFSRT
GWLKRASRWINEKLNDSGYDVESIEKLQHGHGSCVVRVRVSSSMVFYMKC
SNRIGWWNEVRVTQALGEVMPEEFETPFAVDVDLGWMLTRDYGKTLPYRV
FETDVDLAKRVMWRWAEIQKKSISKVEELQERGVAKMDGEALKSAIDRAM
GNPLWFKAQREGMNEEQLERYNDECEYKNEYRAYLQRLFDNVGEYNVPLG
IVHGDLNSVNVIVQGDKSFTFLDMFYTQISFPFLDVILLPLICGSSFEDF
DLDFYLEHWTEYESMERLRELLMLVGEVRSVESVASRIFAFENGEDHERE
EHYMELRFPVCRTFDYHKD*

mRNA from alignment at NODE_327_length_29891_cov_4.655638:19468..20577+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3274.t1 ID=Gcaud3274.t1|Name=Gcaud3274.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:19468..20577+ (Gracilaria caudata M_176_S67 male)
ATGCCGAAAAACTGCAAATGGATACAGCGGTCTTCTGTTGACGAAATCGC
GGTTGATCCTCCTTCGCAAACGATTACGGCCTATCTGGAAAAGTACAAGT
TACGGGGACTGAATTTAGAGGGTGAAAAGCTACATTCATTCTCACGCACA
GGTTGGCTTAAGCGTGCAAGTAGATGGATCAATGAGAAGTTGAATGATAG
TGGATATGACGTGGAGAGTATCGAAAAGCTCCAACATGGTCATGGAAGCT
GCGTTGTAAGAGTGAGGGTTAGCTCGAGCATGGTCTTCTACATGAAGTGT
TCAAATCGCATAGGGTGGTGGAATGAGGTGAGAGTGACACAGGCACTGGG
TGAGGTGATGCCAGAAGAGTTTGAAACGCCGTTTGCGGTTGACGTAGATC
TTGGGTGGATGCTGACACGAGACTATGGAAAGACTCTTCCGTACAGAGTA
TTCGAGACGGACGTGGATCTGGCAAAGAGGGTGATGTGGCGTTGGGCCGA
AATCCAGAAGAAATCTATATCAAAAGTTGAAGAATTGCAGGAGCGGGGAG
TGGCAAAAATGGATGGGGAGGCGCTTAAATCGGCGATTGATCGAGCTATG
GGGAATCCGCTTTGGTTCAAAGCTCAGCGAGAGGGAATGAACGAGGAGCA
GTTAGAGCGGTACAATGATGAATGTGAATATAAGAATGAGTATCGGGCGT
ACTTGCAACGGTTGTTTGACAACGTTGGGGAGTACAATGTGCCGTTAGGA
ATTGTCCATGGGGACTTGAATTCCGTGAACGTTATTGTACAGGGAGACAA
AAGCTTCACCTTTCTCGATATGTTCTACACCCAAATTTCGTTTCCATTTC
TAGATGTAATACTGCTTCCTCTTATATGCGGATCGAGTTTTGAAGATTTC
GATCTTGACTTTTATCTGGAGCATTGGACAGAGTATGAGAGTATGGAAAG
GCTGCGAGAACTGCTGATGCTCGTTGGAGAGGTAAGAAGTGTTGAAAGTG
TGGCATCTAGAATTTTTGCTTTTGAGAATGGGGAAGATCATGAAAGGGAA
GAGCACTACATGGAATTGAGATTTCCGGTTTGTCGTACGTTTGATTATCA
CAAAGACTGA

Coding sequence (CDS) from alignment at NODE_327_length_29891_cov_4.655638:19468..20577+

>Gcaud3274.t1 ID=Gcaud3274.t1|Name=Gcaud3274.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1110bp|location=Sequence derived from alignment at NODE_327_length_29891_cov_4.655638:19468..20577+ (Gracilaria caudata M_176_S67 male)
ATGCCGAAAAACTGCAAATGGATACAGCGGTCTTCTGTTGACGAAATCGC
GGTTGATCCTCCTTCGCAAACGATTACGGCCTATCTGGAAAAGTACAAGT
TACGGGGACTGAATTTAGAGGGTGAAAAGCTACATTCATTCTCACGCACA
GGTTGGCTTAAGCGTGCAAGTAGATGGATCAATGAGAAGTTGAATGATAG
TGGATATGACGTGGAGAGTATCGAAAAGCTCCAACATGGTCATGGAAGCT
GCGTTGTAAGAGTGAGGGTTAGCTCGAGCATGGTCTTCTACATGAAGTGT
TCAAATCGCATAGGGTGGTGGAATGAGGTGAGAGTGACACAGGCACTGGG
TGAGGTGATGCCAGAAGAGTTTGAAACGCCGTTTGCGGTTGACGTAGATC
TTGGGTGGATGCTGACACGAGACTATGGAAAGACTCTTCCGTACAGAGTA
TTCGAGACGGACGTGGATCTGGCAAAGAGGGTGATGTGGCGTTGGGCCGA
AATCCAGAAGAAATCTATATCAAAAGTTGAAGAATTGCAGGAGCGGGGAG
TGGCAAAAATGGATGGGGAGGCGCTTAAATCGGCGATTGATCGAGCTATG
GGGAATCCGCTTTGGTTCAAAGCTCAGCGAGAGGGAATGAACGAGGAGCA
GTTAGAGCGGTACAATGATGAATGTGAATATAAGAATGAGTATCGGGCGT
ACTTGCAACGGTTGTTTGACAACGTTGGGGAGTACAATGTGCCGTTAGGA
ATTGTCCATGGGGACTTGAATTCCGTGAACGTTATTGTACAGGGAGACAA
AAGCTTCACCTTTCTCGATATGTTCTACACCCAAATTTCGTTTCCATTTC
TAGATGTAATACTGCTTCCTCTTATATGCGGATCGAGTTTTGAAGATTTC
GATCTTGACTTTTATCTGGAGCATTGGACAGAGTATGAGAGTATGGAAAG
GCTGCGAGAACTGCTGATGCTCGTTGGAGAGGTAAGAAGTGTTGAAAGTG
TGGCATCTAGAATTTTTGCTTTTGAGAATGGGGAAGATCATGAAAGGGAA
GAGCACTACATGGAATTGAGATTTCCGGTTTGTCGTACGTTTGATTATCA
CAAAGACTGA