Gcaud3340.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3340.t1
Unique NameGcaud3340.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_320_length_30264_cov_4.539025contigNODE_320_length_30264_cov_4.539025:14322..14651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog335543.Sfum_0578
PFAMsCupin_2
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K11312
Evalue5.68e-29
EggNOG OGsCOG1917@1|root,COG1917@2|Bacteria,1MZNT@1224|Proteobacteria,42VFI@68525|delta/epsilon subdivisions,2WR7C@28221|Deltaproteobacteria,2MSKR@213462|Syntrophobacterales
DescriptionCupin domain
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3340Gcaud3340Gracilaria caudata M_176_S67 malegeneNODE_320_length_30264_cov_4.539025 14322..14651 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3340.t1.start1Gcaud3340.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_320_length_30264_cov_4.539025 14322..14324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3340.t1.CDS1Gcaud3340.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_320_length_30264_cov_4.539025 14322..14651 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3340.t1.exon1Gcaud3340.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_320_length_30264_cov_4.539025 14322..14651 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3340.t1.stop1Gcaud3340.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_320_length_30264_cov_4.539025 14649..14651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3340.t1Gcaud3340.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_320_length_30264_cov_4.539025 14322..14651 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3340.t1 ID=Gcaud3340.t1|Name=Gcaud3340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=110bp
MELSFGDLFENVPNHLPEELFQVLVKNDIFIIERIISTGQVSLDWYDQDE
TEFCCVLKGAADLLFEGSDQTIRMSPGKFVVIPAHAKHKVTWTDTSQPTV
WLAMKWKVN*
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spliced messenger RNA

>Gcaud3340.t1 ID=Gcaud3340.t1|Name=Gcaud3340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=330bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:14322..14651+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTATCCTTTGGAGATTTGTTTGAAAACGTTCCAAACCATCTTCC
TGAAGAACTTTTTCAAGTGCTTGTGAAGAATGACATATTCATAATCGAAA
GAATTATTTCCACCGGCCAAGTGTCTCTCGACTGGTACGATCAGGATGAA
ACTGAGTTCTGTTGCGTGTTGAAAGGTGCCGCTGACTTGCTCTTTGAGGG
AAGTGACCAAACAATTCGCATGAGCCCAGGAAAGTTTGTCGTCATTCCAG
CCCATGCCAAGCACAAAGTTACTTGGACAGACACATCGCAACCAACGGTT
TGGCTTGCAATGAAGTGGAAAGTGAACTAG
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protein sequence of Gcaud3340.t1

>Gcaud3340.t1 ID=Gcaud3340.t1|Name=Gcaud3340.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=110bp
MELSFGDLFENVPNHLPEELFQVLVKNDIFIIERIISTGQVSLDWYDQDE
TEFCCVLKGAADLLFEGSDQTIRMSPGKFVVIPAHAKHKVTWTDTSQPTV
WLAMKWKVN*
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mRNA from alignment at NODE_320_length_30264_cov_4.539025:14322..14651+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3340.t1 ID=Gcaud3340.t1|Name=Gcaud3340.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=330bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:14322..14651+ (Gracilaria caudata M_176_S67 male)
ATGGAACTATCCTTTGGAGATTTGTTTGAAAACGTTCCAAACCATCTTCC
TGAAGAACTTTTTCAAGTGCTTGTGAAGAATGACATATTCATAATCGAAA
GAATTATTTCCACCGGCCAAGTGTCTCTCGACTGGTACGATCAGGATGAA
ACTGAGTTCTGTTGCGTGTTGAAAGGTGCCGCTGACTTGCTCTTTGAGGG
AAGTGACCAAACAATTCGCATGAGCCCAGGAAAGTTTGTCGTCATTCCAG
CCCATGCCAAGCACAAAGTTACTTGGACAGACACATCGCAACCAACGGTT
TGGCTTGCAATGAAGTGGAAAGTGAACTAG
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Coding sequence (CDS) from alignment at NODE_320_length_30264_cov_4.539025:14322..14651+

>Gcaud3340.t1 ID=Gcaud3340.t1|Name=Gcaud3340.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=330bp|location=Sequence derived from alignment at NODE_320_length_30264_cov_4.539025:14322..14651+ (Gracilaria caudata M_176_S67 male)
ATGGAACTATCCTTTGGAGATTTGTTTGAAAACGTTCCAAACCATCTTCC
TGAAGAACTTTTTCAAGTGCTTGTGAAGAATGACATATTCATAATCGAAA
GAATTATTTCCACCGGCCAAGTGTCTCTCGACTGGTACGATCAGGATGAA
ACTGAGTTCTGTTGCGTGTTGAAAGGTGCCGCTGACTTGCTCTTTGAGGG
AAGTGACCAAACAATTCGCATGAGCCCAGGAAAGTTTGTCGTCATTCCAG
CCCATGCCAAGCACAAAGTTACTTGGACAGACACATCGCAACCAACGGTT
TGGCTTGCAATGAAGTGGAAAGTGAACTAG
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