Gcaud8603.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8603.t1
Unique NameGcaud8603.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length113
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3102_length_4039_cov_4.735562contigNODE_3102_length_4039_cov_4.735562:1779..2117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002601656.1
Preferred namePIN1
PFAMsRotamase,WW
Max annot lvl33208|Metazoa
KEGG koko:K09578
KEGG Pathwayko04622,map04622
GOsGO:0000413,GO:0001558,GO:0001817,GO:0001818,GO:0001932,GO:0001933,GO:0001934,GO:0003674,GO:0003755,GO:0003774,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006807,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007275,GO:0007346,GO:0007399,GO:0008013,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010611,GO:0010613,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010941,GO:0010942,GO:0014742,GO:0014743,GO:0016043,GO:0016202,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016859,GO:0017015,GO:0017111,GO:0018193,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030177,GO:0030182,GO:0030307,GO:0030496,GO:0030512,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031434,GO:0031647,GO:0031974,GO:0031981,GO:0032091,GO:0032092,GO:0032268,GO:0032269,GO:0032270,GO:0032465,GO:0032479,GO:0032480,GO:0032501,GO:0032502,GO:0032794,GO:0032879,GO:0032880,GO:0033043,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0036211,GO:0038127,GO:0040008,GO:0040012,GO:0040013,GO:0042127,GO:0042176,GO:0042177,GO:0042325,GO:0042326,GO:0042327,GO:0042752,GO:0042981,GO:0042995,GO:0043005,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043408,GO:0043409,GO:0043412,GO:0043502,GO:0043523,GO:0043524,GO:0043525,GO:0043547,GO:0044057,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045309,GO:0045595,GO:0045597,GO:0045844,GO:0045893,GO:0045927,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046620,GO:0046622,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048634,GO:0048636,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050808,GO:0050815,GO:0050816,GO:0050821,GO:0050896,GO:0051094,GO:0051098,GO:0051099,GO:0051100,GO:0051128,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051270,GO:0051271,GO:0051302,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051438,GO:0051443,GO:0051716,GO:0051726,GO:0051783,GO:0055021,GO:0055023,GO:0055024,GO:0055025,GO:0060255,GO:0060284,GO:0060341,GO:0060393,GO:0060420,GO:0060421,GO:0060548,GO:0060828,GO:0061050,GO:0061051,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070372,GO:0070373,GO:0071704,GO:0071840,GO:0080090,GO:0090092,GO:0090101,GO:0090257,GO:0090263,GO:0090287,GO:0090288,GO:0097458,GO:0120025,GO:0140096,GO:1900180,GO:1901214,GO:1901215,GO:1901216,GO:1901564,GO:1901796,GO:1901861,GO:1901863,GO:1902531,GO:1902532,GO:1902680,GO:1903320,GO:1903322,GO:1903506,GO:1903508,GO:1903827,GO:1903844,GO:1903845,GO:1904059,GO:1905207,GO:1905209,GO:2000026,GO:2000112,GO:2000145,GO:2000146,GO:2000725,GO:2000727,GO:2001141
Evalue1.73e-44
EggNOG OGsCOG0760@1|root,KOG3259@2759|Eukaryota,3A05V@33154|Opisthokonta,3BGXQ@33208|Metazoa,3CUS1@33213|Bilateria,48744@7711|Chordata
EC5.2.1.8
Descriptionphosphothreonine residue binding
COG categoryO
BRITEko00000,ko00001,ko01000,ko03021,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8603Gcaud8603Gracilaria caudata M_176_S67 malegeneNODE_3102_length_4039_cov_4.735562 1779..2117 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8603.t1.stop1Gcaud8603.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3102_length_4039_cov_4.735562 1779..1781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8603.t1.CDS1Gcaud8603.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3102_length_4039_cov_4.735562 1779..2117 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8603.t1.exon1Gcaud8603.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3102_length_4039_cov_4.735562 1779..2117 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8603.t1.start1Gcaud8603.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3102_length_4039_cov_4.735562 2115..2117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8603.t1Gcaud8603.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3102_length_4039_cov_4.735562 1779..2117 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8603.t1 ID=Gcaud8603.t1|Name=Gcaud8603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=113bp
MSQVRCRHLLVKHAGSRRPSSWKSEKITRSKEEALEMLAEFRERIVLGQV
SFEELATRESDCSSARNGGDLGFFAHGQMQKPFEDIAFALDINELSGMVE
TNSGVHIIKRIA*
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spliced messenger RNA

>Gcaud8603.t1 ID=Gcaud8603.t1|Name=Gcaud8603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp|location=Sequence derived from alignment at NODE_3102_length_4039_cov_4.735562:1779..2117- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAAGTTCGGTGCCGTCACTTACTTGTCAAACATGCGGGATCTCG
TCGTCCGTCATCTTGGAAGAGCGAGAAAATCACTCGTTCTAAAGAAGAAG
CCCTCGAAATGCTAGCTGAGTTTCGTGAACGTATCGTGCTTGGACAGGTA
AGCTTCGAGGAACTGGCTACGAGGGAAAGCGATTGCTCCTCCGCTCGAAA
CGGAGGAGATCTAGGCTTCTTTGCACATGGCCAGATGCAAAAGCCTTTCG
AAGACATTGCGTTTGCGTTGGACATTAACGAACTTAGTGGAATGGTGGAG
ACAAACAGCGGAGTGCACATCATAAAGCGAATTGCCTAG
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protein sequence of Gcaud8603.t1

>Gcaud8603.t1 ID=Gcaud8603.t1|Name=Gcaud8603.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=113bp
MSQVRCRHLLVKHAGSRRPSSWKSEKITRSKEEALEMLAEFRERIVLGQV
SFEELATRESDCSSARNGGDLGFFAHGQMQKPFEDIAFALDINELSGMVE
TNSGVHIIKRIA*
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mRNA from alignment at NODE_3102_length_4039_cov_4.735562:1779..2117-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8603.t1 ID=Gcaud8603.t1|Name=Gcaud8603.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp|location=Sequence derived from alignment at NODE_3102_length_4039_cov_4.735562:1779..2117- (Gracilaria caudata M_176_S67 male)
ATGTCTCAAGTTCGGTGCCGTCACTTACTTGTCAAACATGCGGGATCTCG
TCGTCCGTCATCTTGGAAGAGCGAGAAAATCACTCGTTCTAAAGAAGAAG
CCCTCGAAATGCTAGCTGAGTTTCGTGAACGTATCGTGCTTGGACAGGTA
AGCTTCGAGGAACTGGCTACGAGGGAAAGCGATTGCTCCTCCGCTCGAAA
CGGAGGAGATCTAGGCTTCTTTGCACATGGCCAGATGCAAAAGCCTTTCG
AAGACATTGCGTTTGCGTTGGACATTAACGAACTTAGTGGAATGGTGGAG
ACAAACAGCGGAGTGCACATCATAAAGCGAATTGCCTAG
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Coding sequence (CDS) from alignment at NODE_3102_length_4039_cov_4.735562:1779..2117-

>Gcaud8603.t1 ID=Gcaud8603.t1|Name=Gcaud8603.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=339bp|location=Sequence derived from alignment at NODE_3102_length_4039_cov_4.735562:1779..2117- (Gracilaria caudata M_176_S67 male)
ATGTCTCAAGTTCGGTGCCGTCACTTACTTGTCAAACATGCGGGATCTCG
TCGTCCGTCATCTTGGAAGAGCGAGAAAATCACTCGTTCTAAAGAAGAAG
CCCTCGAAATGCTAGCTGAGTTTCGTGAACGTATCGTGCTTGGACAGGTA
AGCTTCGAGGAACTGGCTACGAGGGAAAGCGATTGCTCCTCCGCTCGAAA
CGGAGGAGATCTAGGCTTCTTTGCACATGGCCAGATGCAAAAGCCTTTCG
AAGACATTGCGTTTGCGTTGGACATTAACGAACTTAGTGGAATGGTGGAG
ACAAACAGCGGAGTGCACATCATAAAGCGAATTGCCTAG
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