Gcaud8602.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8602.t1
Unique NameGcaud8602.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length11
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3102_length_4039_cov_4.735562contigNODE_3102_length_4039_cov_4.735562:1230..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8602Gcaud8602Gracilaria caudata M_176_S67 malegeneNODE_3102_length_4039_cov_4.735562 1230..1344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8602.t1Gcaud8602.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3102_length_4039_cov_4.735562 1230..1344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8602.t1.CDS1Gcaud8602.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3102_length_4039_cov_4.735562 1230..1232 +
Gcaud8602.t1.CDS2Gcaud8602.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_3102_length_4039_cov_4.735562 1317..1344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8602.t1.exon1Gcaud8602.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3102_length_4039_cov_4.735562 1230..1232 +
Gcaud8602.t1.exon2Gcaud8602.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_3102_length_4039_cov_4.735562 1317..1344 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8602.t1.intron1Gcaud8602.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_3102_length_4039_cov_4.735562 1233..1316 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8602.t1.stop1Gcaud8602.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3102_length_4039_cov_4.735562 1342..1344 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8602.t1 ID=Gcaud8602.t1|Name=Gcaud8602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=11bp
XDALPLFRVC*
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spliced messenger RNA

>Gcaud8602.t1 ID=Gcaud8602.t1|Name=Gcaud8602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=31bp|location=Sequence derived from alignment at NODE_3102_length_4039_cov_4.735562:1230..1344+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CGACGCTCTACCTCTATTTCGTGTCTGCTAA
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protein sequence of Gcaud8602.t1

>Gcaud8602.t1 ID=Gcaud8602.t1|Name=Gcaud8602.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=11bp
XDALPLFRVC*
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mRNA from alignment at NODE_3102_length_4039_cov_4.735562:1230..1344+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8602.t1 ID=Gcaud8602.t1|Name=Gcaud8602.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=115bp|location=Sequence derived from alignment at NODE_3102_length_4039_cov_4.735562:1230..1344+ (Gracilaria caudata M_176_S67 male)
CGAGTATGTTCAAGAGATCTAAAGAAGAAGACAGCGCAACCACTCGCGTC
TAACCTATTGCTCATGCGGATACAATACTGTATATAGCGCTCTACCTCTA
TTTCGTGTCTGCTAA
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Coding sequence (CDS) from alignment at NODE_3102_length_4039_cov_4.735562:1230..1344+

>Gcaud8602.t1 ID=Gcaud8602.t1|Name=Gcaud8602.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=31bp|location=Sequence derived from alignment at NODE_3102_length_4039_cov_4.735562:1230..1344+ (Gracilaria caudata M_176_S67 male)
CGACGCTCTACCTCTATTTCGTGTCTGCTAA
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