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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 43229.XP_007721680.1 |
| Preferred name | ARP5 |
| PFAMs | Actin |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K11672 |
| GOs | GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006338,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031011,GO:0031974,GO:0031981,GO:0032991,GO:0033202,GO:0034728,GO:0042766,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051276,GO:0060303,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0071824,GO:0071840,GO:0097346,GO:1902494,GO:1904949 |
| Evalue | 1.24e-68 |
| EggNOG OGs | KOG0681@1|root,KOG0681@2759|Eukaryota,38HNM@33154|Opisthokonta,3NVG1@4751|Fungi,3QMKH@4890|Ascomycota,20CYW@147545|Eurotiomycetes,3MQ40@451870|Chaetothyriomycetidae |
| Description | Belongs to the actin family |
| COG category | Z |
| BRITE | ko00000,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8243.t1.stop1 | Gcaud8243.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_308_length_31041_cov_4.463651 11048..11050 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8243.t1.exon1 | Gcaud8243.t1.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_308_length_31041_cov_4.463651 11048..13513 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8243.t1.start1 | Gcaud8243.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_308_length_31041_cov_4.463651 13511..13513 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8243.t1 ID=Gcaud8243.t1|Name=Gcaud8243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp MAGQKARKRPEPDFFLDDPSPLYNKPVTPAQYHTNDVYSSSKAIVFDLGS STLRAGFSRCPEPLMQLPPYVARLKDPETGIRTFLVGTDALTSSARSTAK PAYKSGLPNNPALMERLLDGTLAGLGLADEPRVNHSFVLTEAPMQPNSAR ALMMELIFEAYEAPSICFGVDALFSYFWNCQARGGLSFANRSGCVISCGY YTTHVLPVVQGALRANGVKRINVGGSDMTDQFTKRLQLLNQEHAGVLSTN RCELLKEKVCYVSEDYDNELLDIQTDVDYYNKITKTVKVPTGEGAEKPPL SAEEKEKLKQARSENGRRLSELMKEKRRARKERGSGTDEAVESTSYTEEE VKPFYACMDEFYQLKRIEAMRELDEDGYYLALSNLNMDATSALLAEIDKR QEKLDDERQTLGEGKARAAEEAWWKRIYEDELLSMSDSELNPAELKRKRQ IRAWRGAAEARERAKRAKEAEKAEKERQAEEKRRMKEERPEEYLAGLRKE RETLAGRIKKKKAARAAGSDRRSQAARERMRLLAQHAGNKPGFEDGAGKG RGRGRGRGRKTRGRGRGRGRGRGGRKAKTDVDDDNFGWNDEDWDVYRSMR VGGNESDSDDNSAEERARLQAVREEIMELAPEEVDPTISRPEGVALLYEE NKYADEFAVTVDRIRTPELMFQPTLSGVEQCGLIEALRLSVGNRSEIVKE VFVTGGVARTYGLRERISAELRRCFPSEWGDDIVAGLTFAEDPVLDAWKG AALFAEQGGDEFGKACITKAEFEEMGNGYLKEHAMSNVFVPTPVLSAADL ELKKKMQKQASKRGRSRSMLG* back to topspliced messenger RNA >Gcaud8243.t1 ID=Gcaud8243.t1|Name=Gcaud8243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2466bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:11048..13513- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTGGCCAGAAAGCTCGCAAACGACCAGAACCCGACTTTTTTTTGGA TGATCCTTCTCCACTTTATAACAAACCTGTAACACCAGCCCAGTATCACA CAAATGATGTATACTCTTCTTCGAAAGCGATCGTTTTCGACCTGGGTTCA TCCACCCTTCGAGCTGGATTCTCACGGTGCCCCGAACCTCTTATGCAGCT TCCCCCTTACGTGGCTCGTTTGAAGGATCCTGAAACCGGCATACGAACGT TTCTCGTCGGTACTGATGCGTTAACTTCCTCCGCGCGCTCAACTGCCAAA CCGGCTTACAAGTCGGGTTTGCCGAATAATCCTGCGCTCATGGAGAGATT ATTGGATGGAACCCTGGCTGGATTAGGATTGGCGGATGAGCCACGAGTTA ACCATAGCTTCGTACTGACTGAAGCCCCAATGCAGCCCAATTCAGCTCGA GCTCTGATGATGGAGTTAATTTTTGAAGCATACGAAGCACCTTCAATATG TTTTGGTGTGGACGCCTTATTCAGTTACTTTTGGAATTGCCAAGCGCGCG GTGGTCTTTCTTTTGCGAATCGAAGCGGTTGCGTTATATCGTGCGGATAT TATACAACTCATGTCTTACCAGTTGTGCAAGGAGCGCTGCGTGCAAACGG AGTGAAGCGAATAAATGTTGGAGGCTCAGACATGACAGACCAGTTCACGA AAAGGTTGCAGTTGCTCAATCAAGAACACGCTGGTGTGTTATCCACAAAT CGTTGCGAACTTTTGAAAGAAAAAGTGTGCTATGTCTCAGAAGATTATGA TAACGAACTTTTAGACATACAGACTGATGTCGATTACTACAACAAGATCA CTAAAACTGTCAAGGTTCCCACAGGGGAGGGTGCCGAGAAACCTCCCCTT TCAGCGGAGGAAAAGGAAAAACTGAAACAAGCACGAAGCGAGAACGGGCG TCGTTTGAGCGAATTAATGAAGGAAAAGCGACGTGCTCGGAAGGAAAGAG GTTCTGGTACCGATGAAGCGGTAGAAAGCACATCATACACAGAAGAAGAG GTAAAACCCTTTTATGCTTGCATGGACGAGTTTTACCAACTTAAGCGAAT CGAGGCAATGCGTGAACTGGACGAGGACGGCTACTACCTTGCTCTGTCAA ACTTGAATATGGATGCGACTTCCGCGCTGTTGGCTGAGATTGATAAGAGA CAAGAAAAACTTGACGATGAGCGACAGACGCTTGGTGAAGGGAAAGCCCG AGCGGCAGAGGAAGCGTGGTGGAAACGTATTTATGAAGATGAGCTACTGT CTATGTCTGATTCAGAACTCAACCCGGCAGAACTCAAGCGGAAACGGCAG ATACGTGCATGGCGCGGCGCGGCTGAAGCAAGAGAACGAGCAAAACGAGC AAAAGAAGCCGAAAAAGCCGAAAAGGAGAGACAAGCAGAGGAAAAACGAC GAATGAAAGAGGAACGGCCGGAGGAGTATCTTGCAGGGCTTCGAAAAGAA CGAGAGACATTAGCAGGGCGCATCAAGAAAAAGAAGGCAGCGCGTGCAGC GGGTTCTGACAGAAGATCTCAGGCAGCTCGCGAACGAATGCGTTTACTTG CTCAGCACGCTGGGAACAAGCCTGGCTTTGAAGACGGTGCCGGAAAAGGA AGGGGGCGTGGAAGGGGACGTGGACGCAAGACGAGAGGTCGAGGAAGAGG AAGAGGGCGGGGAAGAGGCGGAAGAAAAGCGAAAACTGACGTAGATGACG ATAACTTCGGGTGGAATGATGAGGATTGGGATGTGTACCGGTCCATGAGA GTAGGGGGCAACGAGTCTGATTCCGATGATAATTCCGCAGAAGAGAGAGC ACGATTGCAGGCTGTGCGAGAGGAAATCATGGAGTTGGCTCCGGAAGAAG TGGATCCCACGATCTCACGACCTGAAGGCGTTGCTCTGTTGTACGAAGAG AACAAGTATGCGGACGAATTCGCAGTGACGGTGGACAGGATTAGAACACC AGAGCTAATGTTTCAACCGACATTGTCTGGGGTAGAACAATGTGGACTGA TCGAAGCACTGCGTCTCAGCGTGGGGAACCGGAGTGAGATTGTCAAGGAA GTGTTTGTGACAGGAGGAGTGGCGCGGACTTATGGACTGCGCGAACGAAT TAGCGCAGAGTTGAGACGTTGTTTCCCGAGTGAATGGGGAGACGACATCG TTGCGGGGCTGACGTTTGCAGAAGACCCGGTTTTGGATGCGTGGAAGGGC GCGGCGCTATTTGCCGAACAAGGGGGAGATGAGTTCGGCAAGGCTTGCAT CACCAAAGCGGAGTTCGAGGAGATGGGGAACGGGTACCTCAAAGAGCATG CCATGAGTAATGTGTTCGTGCCGACACCGGTGCTCTCTGCGGCGGACCTC GAGCTCAAGAAGAAGATGCAGAAGCAGGCTAGCAAGCGGGGGAGATCGCG TTCGATGCTGGGGTAG back to topprotein sequence of Gcaud8243.t1 >Gcaud8243.t1 ID=Gcaud8243.t1|Name=Gcaud8243.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=822bp
MAGQKARKRPEPDFFLDDPSPLYNKPVTPAQYHTNDVYSSSKAIVFDLGS STLRAGFSRCPEPLMQLPPYVARLKDPETGIRTFLVGTDALTSSARSTAK PAYKSGLPNNPALMERLLDGTLAGLGLADEPRVNHSFVLTEAPMQPNSAR ALMMELIFEAYEAPSICFGVDALFSYFWNCQARGGLSFANRSGCVISCGY YTTHVLPVVQGALRANGVKRINVGGSDMTDQFTKRLQLLNQEHAGVLSTN RCELLKEKVCYVSEDYDNELLDIQTDVDYYNKITKTVKVPTGEGAEKPPL SAEEKEKLKQARSENGRRLSELMKEKRRARKERGSGTDEAVESTSYTEEE VKPFYACMDEFYQLKRIEAMRELDEDGYYLALSNLNMDATSALLAEIDKR QEKLDDERQTLGEGKARAAEEAWWKRIYEDELLSMSDSELNPAELKRKRQ IRAWRGAAEARERAKRAKEAEKAEKERQAEEKRRMKEERPEEYLAGLRKE RETLAGRIKKKKAARAAGSDRRSQAARERMRLLAQHAGNKPGFEDGAGKG RGRGRGRGRKTRGRGRGRGRGRGGRKAKTDVDDDNFGWNDEDWDVYRSMR VGGNESDSDDNSAEERARLQAVREEIMELAPEEVDPTISRPEGVALLYEE NKYADEFAVTVDRIRTPELMFQPTLSGVEQCGLIEALRLSVGNRSEIVKE VFVTGGVARTYGLRERISAELRRCFPSEWGDDIVAGLTFAEDPVLDAWKG AALFAEQGGDEFGKACITKAEFEEMGNGYLKEHAMSNVFVPTPVLSAADL ELKKKMQKQASKRGRSRSMLG* back to topmRNA from alignment at NODE_308_length_31041_cov_4.463651:11048..13513- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8243.t1 ID=Gcaud8243.t1|Name=Gcaud8243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2466bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:11048..13513- (Gracilaria caudata M_176_S67 male) ATGGCTGGCCAGAAAGCTCGCAAACGACCAGAACCCGACTTTTTTTTGGA
TGATCCTTCTCCACTTTATAACAAACCTGTAACACCAGCCCAGTATCACA
CAAATGATGTATACTCTTCTTCGAAAGCGATCGTTTTCGACCTGGGTTCA
TCCACCCTTCGAGCTGGATTCTCACGGTGCCCCGAACCTCTTATGCAGCT
TCCCCCTTACGTGGCTCGTTTGAAGGATCCTGAAACCGGCATACGAACGT
TTCTCGTCGGTACTGATGCGTTAACTTCCTCCGCGCGCTCAACTGCCAAA
CCGGCTTACAAGTCGGGTTTGCCGAATAATCCTGCGCTCATGGAGAGATT
ATTGGATGGAACCCTGGCTGGATTAGGATTGGCGGATGAGCCACGAGTTA
ACCATAGCTTCGTACTGACTGAAGCCCCAATGCAGCCCAATTCAGCTCGA
GCTCTGATGATGGAGTTAATTTTTGAAGCATACGAAGCACCTTCAATATG
TTTTGGTGTGGACGCCTTATTCAGTTACTTTTGGAATTGCCAAGCGCGCG
GTGGTCTTTCTTTTGCGAATCGAAGCGGTTGCGTTATATCGTGCGGATAT
TATACAACTCATGTCTTACCAGTTGTGCAAGGAGCGCTGCGTGCAAACGG
AGTGAAGCGAATAAATGTTGGAGGCTCAGACATGACAGACCAGTTCACGA
AAAGGTTGCAGTTGCTCAATCAAGAACACGCTGGTGTGTTATCCACAAAT
CGTTGCGAACTTTTGAAAGAAAAAGTGTGCTATGTCTCAGAAGATTATGA
TAACGAACTTTTAGACATACAGACTGATGTCGATTACTACAACAAGATCA
CTAAAACTGTCAAGGTTCCCACAGGGGAGGGTGCCGAGAAACCTCCCCTT
TCAGCGGAGGAAAAGGAAAAACTGAAACAAGCACGAAGCGAGAACGGGCG
TCGTTTGAGCGAATTAATGAAGGAAAAGCGACGTGCTCGGAAGGAAAGAG
GTTCTGGTACCGATGAAGCGGTAGAAAGCACATCATACACAGAAGAAGAG
GTAAAACCCTTTTATGCTTGCATGGACGAGTTTTACCAACTTAAGCGAAT
CGAGGCAATGCGTGAACTGGACGAGGACGGCTACTACCTTGCTCTGTCAA
ACTTGAATATGGATGCGACTTCCGCGCTGTTGGCTGAGATTGATAAGAGA
CAAGAAAAACTTGACGATGAGCGACAGACGCTTGGTGAAGGGAAAGCCCG
AGCGGCAGAGGAAGCGTGGTGGAAACGTATTTATGAAGATGAGCTACTGT
CTATGTCTGATTCAGAACTCAACCCGGCAGAACTCAAGCGGAAACGGCAG
ATACGTGCATGGCGCGGCGCGGCTGAAGCAAGAGAACGAGCAAAACGAGC
AAAAGAAGCCGAAAAAGCCGAAAAGGAGAGACAAGCAGAGGAAAAACGAC
GAATGAAAGAGGAACGGCCGGAGGAGTATCTTGCAGGGCTTCGAAAAGAA
CGAGAGACATTAGCAGGGCGCATCAAGAAAAAGAAGGCAGCGCGTGCAGC
GGGTTCTGACAGAAGATCTCAGGCAGCTCGCGAACGAATGCGTTTACTTG
CTCAGCACGCTGGGAACAAGCCTGGCTTTGAAGACGGTGCCGGAAAAGGA
AGGGGGCGTGGAAGGGGACGTGGACGCAAGACGAGAGGTCGAGGAAGAGG
AAGAGGGCGGGGAAGAGGCGGAAGAAAAGCGAAAACTGACGTAGATGACG
ATAACTTCGGGTGGAATGATGAGGATTGGGATGTGTACCGGTCCATGAGA
GTAGGGGGCAACGAGTCTGATTCCGATGATAATTCCGCAGAAGAGAGAGC
ACGATTGCAGGCTGTGCGAGAGGAAATCATGGAGTTGGCTCCGGAAGAAG
TGGATCCCACGATCTCACGACCTGAAGGCGTTGCTCTGTTGTACGAAGAG
AACAAGTATGCGGACGAATTCGCAGTGACGGTGGACAGGATTAGAACACC
AGAGCTAATGTTTCAACCGACATTGTCTGGGGTAGAACAATGTGGACTGA
TCGAAGCACTGCGTCTCAGCGTGGGGAACCGGAGTGAGATTGTCAAGGAA
GTGTTTGTGACAGGAGGAGTGGCGCGGACTTATGGACTGCGCGAACGAAT
TAGCGCAGAGTTGAGACGTTGTTTCCCGAGTGAATGGGGAGACGACATCG
TTGCGGGGCTGACGTTTGCAGAAGACCCGGTTTTGGATGCGTGGAAGGGC
GCGGCGCTATTTGCCGAACAAGGGGGAGATGAGTTCGGCAAGGCTTGCAT
CACCAAAGCGGAGTTCGAGGAGATGGGGAACGGGTACCTCAAAGAGCATG
CCATGAGTAATGTGTTCGTGCCGACACCGGTGCTCTCTGCGGCGGACCTC
GAGCTCAAGAAGAAGATGCAGAAGCAGGCTAGCAAGCGGGGGAGATCGCG
TTCGATGCTGGGGTAG back to topCoding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:11048..13513- >Gcaud8243.t1 ID=Gcaud8243.t1|Name=Gcaud8243.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2466bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:11048..13513- (Gracilaria caudata M_176_S67 male) ATGGCTGGCCAGAAAGCTCGCAAACGACCAGAACCCGACTTTTTTTTGGA TGATCCTTCTCCACTTTATAACAAACCTGTAACACCAGCCCAGTATCACA CAAATGATGTATACTCTTCTTCGAAAGCGATCGTTTTCGACCTGGGTTCA TCCACCCTTCGAGCTGGATTCTCACGGTGCCCCGAACCTCTTATGCAGCT TCCCCCTTACGTGGCTCGTTTGAAGGATCCTGAAACCGGCATACGAACGT TTCTCGTCGGTACTGATGCGTTAACTTCCTCCGCGCGCTCAACTGCCAAA CCGGCTTACAAGTCGGGTTTGCCGAATAATCCTGCGCTCATGGAGAGATT ATTGGATGGAACCCTGGCTGGATTAGGATTGGCGGATGAGCCACGAGTTA ACCATAGCTTCGTACTGACTGAAGCCCCAATGCAGCCCAATTCAGCTCGA GCTCTGATGATGGAGTTAATTTTTGAAGCATACGAAGCACCTTCAATATG TTTTGGTGTGGACGCCTTATTCAGTTACTTTTGGAATTGCCAAGCGCGCG GTGGTCTTTCTTTTGCGAATCGAAGCGGTTGCGTTATATCGTGCGGATAT TATACAACTCATGTCTTACCAGTTGTGCAAGGAGCGCTGCGTGCAAACGG AGTGAAGCGAATAAATGTTGGAGGCTCAGACATGACAGACCAGTTCACGA AAAGGTTGCAGTTGCTCAATCAAGAACACGCTGGTGTGTTATCCACAAAT CGTTGCGAACTTTTGAAAGAAAAAGTGTGCTATGTCTCAGAAGATTATGA TAACGAACTTTTAGACATACAGACTGATGTCGATTACTACAACAAGATCA CTAAAACTGTCAAGGTTCCCACAGGGGAGGGTGCCGAGAAACCTCCCCTT TCAGCGGAGGAAAAGGAAAAACTGAAACAAGCACGAAGCGAGAACGGGCG TCGTTTGAGCGAATTAATGAAGGAAAAGCGACGTGCTCGGAAGGAAAGAG GTTCTGGTACCGATGAAGCGGTAGAAAGCACATCATACACAGAAGAAGAG GTAAAACCCTTTTATGCTTGCATGGACGAGTTTTACCAACTTAAGCGAAT CGAGGCAATGCGTGAACTGGACGAGGACGGCTACTACCTTGCTCTGTCAA ACTTGAATATGGATGCGACTTCCGCGCTGTTGGCTGAGATTGATAAGAGA CAAGAAAAACTTGACGATGAGCGACAGACGCTTGGTGAAGGGAAAGCCCG AGCGGCAGAGGAAGCGTGGTGGAAACGTATTTATGAAGATGAGCTACTGT CTATGTCTGATTCAGAACTCAACCCGGCAGAACTCAAGCGGAAACGGCAG ATACGTGCATGGCGCGGCGCGGCTGAAGCAAGAGAACGAGCAAAACGAGC AAAAGAAGCCGAAAAAGCCGAAAAGGAGAGACAAGCAGAGGAAAAACGAC GAATGAAAGAGGAACGGCCGGAGGAGTATCTTGCAGGGCTTCGAAAAGAA CGAGAGACATTAGCAGGGCGCATCAAGAAAAAGAAGGCAGCGCGTGCAGC GGGTTCTGACAGAAGATCTCAGGCAGCTCGCGAACGAATGCGTTTACTTG CTCAGCACGCTGGGAACAAGCCTGGCTTTGAAGACGGTGCCGGAAAAGGA AGGGGGCGTGGAAGGGGACGTGGACGCAAGACGAGAGGTCGAGGAAGAGG AAGAGGGCGGGGAAGAGGCGGAAGAAAAGCGAAAACTGACGTAGATGACG ATAACTTCGGGTGGAATGATGAGGATTGGGATGTGTACCGGTCCATGAGA GTAGGGGGCAACGAGTCTGATTCCGATGATAATTCCGCAGAAGAGAGAGC ACGATTGCAGGCTGTGCGAGAGGAAATCATGGAGTTGGCTCCGGAAGAAG TGGATCCCACGATCTCACGACCTGAAGGCGTTGCTCTGTTGTACGAAGAG AACAAGTATGCGGACGAATTCGCAGTGACGGTGGACAGGATTAGAACACC AGAGCTAATGTTTCAACCGACATTGTCTGGGGTAGAACAATGTGGACTGA TCGAAGCACTGCGTCTCAGCGTGGGGAACCGGAGTGAGATTGTCAAGGAA GTGTTTGTGACAGGAGGAGTGGCGCGGACTTATGGACTGCGCGAACGAAT TAGCGCAGAGTTGAGACGTTGTTTCCCGAGTGAATGGGGAGACGACATCG TTGCGGGGCTGACGTTTGCAGAAGACCCGGTTTTGGATGCGTGGAAGGGC GCGGCGCTATTTGCCGAACAAGGGGGAGATGAGTTCGGCAAGGCTTGCAT CACCAAAGCGGAGTTCGAGGAGATGGGGAACGGGTACCTCAAAGAGCATG CCATGAGTAATGTGTTCGTGCCGACACCGGTGCTCTCTGCGGCGGACCTC GAGCTCAAGAAGAAGATGCAGAAGCAGGCTAGCAAGCGGGGGAGATCGCG TTCGATGCTGGGGTAG back to top
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