Gcaud2427.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2427.t1
Unique NameGcaud2427.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length139
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:26070..26563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1423807.BACO01000024_gene797
Preferred namegatC
PFAMsGlu-tRNAGln
Max annot lvl91061|Bacilli
KEGG rclassRC00010
KEGG koko:K02435
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Evalue1.88e-18
EggNOG OGsCOG0721@1|root,COG0721@2|Bacteria,1VEK3@1239|Firmicutes,4HNNA@91061|Bacilli,3F7XB@33958|Lactobacillaceae
EC6.3.5.6,6.3.5.7
DescriptionAllows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2427Gcaud2427Gracilaria caudata M_176_S67 malegeneNODE_295_length_31939_cov_4.445679 26070..26563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2427.t1Gcaud2427.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_295_length_31939_cov_4.445679 26070..26563 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2427.t1.stop1Gcaud2427.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_295_length_31939_cov_4.445679 26070..26072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2427.t1.CDS1Gcaud2427.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 26070..26151 -
Gcaud2427.t1.CDS2Gcaud2427.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_295_length_31939_cov_4.445679 26229..26563 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2427.t1.exon1Gcaud2427.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 26070..26151 -
Gcaud2427.t1.exon2Gcaud2427.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_295_length_31939_cov_4.445679 26229..26563 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2427.t1.intron1Gcaud2427.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_295_length_31939_cov_4.445679 26152..26228 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2427.t1.start1Gcaud2427.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_295_length_31939_cov_4.445679 26561..26563 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2427.t1 ID=Gcaud2427.t1|Name=Gcaud2427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=139bp
MKAGEPAFISSFPCWSRIGQSTVYRSACRRSRSPPVRSCSDISRQEVENI
AKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNV
MREDVPHRFSNVDDIMAEAPSLEKDYIRVPKLSSNPSD*
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spliced messenger RNA

>Gcaud2427.t1 ID=Gcaud2427.t1|Name=Gcaud2427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:26070..26563- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCTGGGGAACCCGCATTTATCTCTTCTTTTCCATGCTGGTCAAG
AATTGGTCAATCGACAGTGTATCGTTCCGCATGTCGAAGATCGCGTTCAC
CCCCCGTGAGAAGTTGCAGCGATATTTCGAGACAGGAGGTGGAAAACATT
GCTAAGCTGGCCCAATTGCGACTATCTGATGAGGAGCTAGGCAAAATTGT
TCCCGAAATCCAAAAAGTCGTGGCCTTCTTCGACACCATCAGTGAGGTCG
ATGTGGAAGGGATTGAACCAATGACCTCTGCTCAAAATTTGCAAAACGTG
ATGAGAGAAGACGTCCCTCATCGTTTTTCTAATGTGGACGATATCATGGC
AGAAGCTCCGTCTTTGGAGAAAGATTATATCCGTGTCCCAAAGCTGTCGT
CGAATCCATCAGATTAA
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protein sequence of Gcaud2427.t1

>Gcaud2427.t1 ID=Gcaud2427.t1|Name=Gcaud2427.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=139bp
MKAGEPAFISSFPCWSRIGQSTVYRSACRRSRSPPVRSCSDISRQEVENI
AKLAQLRLSDEELGKIVPEIQKVVAFFDTISEVDVEGIEPMTSAQNLQNV
MREDVPHRFSNVDDIMAEAPSLEKDYIRVPKLSSNPSD*
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mRNA from alignment at NODE_295_length_31939_cov_4.445679:26070..26563-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2427.t1 ID=Gcaud2427.t1|Name=Gcaud2427.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=494bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:26070..26563- (Gracilaria caudata M_176_S67 male)
ATGAAGGCTGGGGAACCCGCATTTATCTCTTCTTTTCCATGCTGGTCAAG
AATTGGTCAATCGACAGTGTATCGTTCCGCATGTCGAAGATCGCGTTCAC
CCCCCGTGAGAAGTTGCAGCGATATTTCGAGACAGGAGGTGGAAAACATT
GCTAAGCTGGCCCAATTGCGACTATCTGATGAGGAGCTAGGCAAAATTGT
TCCCGAAATCCAAAAAGTCGTGGCCTTCTTCGACACCATCAGTGAGGTCG
ATGTGGAAGGGATTGAACCAATGACCTCTGCTCAAAATTTGCAAAACGTG
ATGAGAGAAGACGTCCCTCATCGTTTTTCTAATGTGTACGTGCACCTAAG
AAGTTGTTTCCTCTCCGTTTTAGTACTGAACTCTAACAATATGCATTCTA
CTCTCTTTACAGGGACGATATCATGGCAGAAGCTCCGTCTTTGGAGAAAG
ATTATATCCGTGTCCCAAAGCTGTCGTCGAATCCATCAGATTAA
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Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:26070..26563-

>Gcaud2427.t1 ID=Gcaud2427.t1|Name=Gcaud2427.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=417bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:26070..26563- (Gracilaria caudata M_176_S67 male)
ATGAAGGCTGGGGAACCCGCATTTATCTCTTCTTTTCCATGCTGGTCAAG
AATTGGTCAATCGACAGTGTATCGTTCCGCATGTCGAAGATCGCGTTCAC
CCCCCGTGAGAAGTTGCAGCGATATTTCGAGACAGGAGGTGGAAAACATT
GCTAAGCTGGCCCAATTGCGACTATCTGATGAGGAGCTAGGCAAAATTGT
TCCCGAAATCCAAAAAGTCGTGGCCTTCTTCGACACCATCAGTGAGGTCG
ATGTGGAAGGGATTGAACCAATGACCTCTGCTCAAAATTTGCAAAACGTG
ATGAGAGAAGACGTCCCTCATCGTTTTTCTAATGTGGACGATATCATGGC
AGAAGCTCCGTCTTTGGAGAAAGATTATATCCGTGTCCCAAAGCTGTCGT
CGAATCCATCAGATTAA
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