Gcaud2426.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2426.t1
Unique Name	Gcaud2426.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:24562..25560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2426	Gcaud2426	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 24562..25560 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2426.t1.start1	Gcaud2426.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 24562..24564 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2426.t1.CDS1	Gcaud2426.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 24562..25560 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2426.t1.exon1	Gcaud2426.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 24562..25560 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2426.t1.stop1	Gcaud2426.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 25558..25560 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2426.t1	Gcaud2426.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 24562..25560 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:24562..25560+
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:24562..25560+

mRNA sequence

>Gcaud2426.t1 ID=Gcaud2426.t1|Name=Gcaud2426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=333bp
MRRSSSKLITRARSLRNVSKVPFKFKFDLLIETVDKLAAQGDVVVIWERS
NNKLHATKAVKIDKNTRKASFNNEKIATDITLFKSQPSERRFQEKVVKLA
VKQNNADGKTLGKIHLNLADYAEVPSGSKRICAELTNGAVLIATVQCQFL
SMGKTIQTKPGKSETNESSQDEEEADDDVESESNSVAADESPTGFLKNKL
KIARAGSKKLIGRSVGRQKADEENNMEVANTVDQQSFDQLRKENQRLRKQ
LEEAECNVGLPADAKRGDVAKALRNEVRELRNALAREPIYADVVKELKEA
KMALALLHLEKEEVLFELMKYQRGEKSPRNSE*

spliced messenger RNA

>Gcaud2426.t1 ID=Gcaud2426.t1|Name=Gcaud2426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=999bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:24562..25560+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGTTCTTCGTCGAAGTTGATTACTCGCGCAAGGAGTTTGCGAAA
TGTGAGCAAGGTTCCTTTCAAGTTCAAGTTCGACTTGCTTATCGAGACAG
TGGACAAACTTGCTGCTCAAGGAGATGTGGTCGTTATCTGGGAAAGGTCC
AATAACAAGCTTCATGCTACGAAAGCGGTTAAAATTGATAAGAACACGAG
GAAAGCATCCTTTAACAACGAAAAGATTGCCACTGATATCACCCTGTTTA
AGAGTCAACCATCAGAACGTCGATTCCAAGAGAAGGTTGTCAAATTAGCG
GTGAAGCAGAACAACGCCGATGGAAAAACGCTTGGAAAGATTCATCTCAA
CCTTGCCGATTACGCCGAGGTTCCTTCAGGGTCGAAACGAATCTGTGCCG
AACTAACGAATGGCGCTGTACTTATTGCCACAGTGCAATGCCAGTTTCTG
TCAATGGGAAAGACAATTCAAACGAAACCTGGAAAGTCTGAAACAAATGA
AAGCTCGCAAGACGAGGAAGAAGCTGATGACGATGTGGAGAGTGAGTCCA
ACTCTGTTGCTGCGGATGAGAGCCCTACTGGGTTTTTGAAGAACAAGCTG
AAGATTGCTCGTGCTGGATCAAAGAAACTAATTGGACGCAGCGTTGGTAG
ACAGAAGGCCGATGAGGAGAATAACATGGAAGTAGCAAACACTGTTGACC
AGCAAAGCTTTGATCAGTTGCGGAAGGAGAATCAAAGACTCAGGAAGCAA
TTGGAGGAAGCTGAGTGCAATGTCGGATTGCCTGCAGATGCTAAACGGGG
GGACGTAGCTAAGGCACTAAGGAACGAGGTCCGAGAGCTTCGAAACGCAC
TAGCAAGGGAACCAATCTACGCTGACGTCGTGAAAGAACTAAAAGAGGCG
AAGATGGCGTTGGCACTGCTTCACCTCGAAAAGGAAGAAGTTTTGTTTGA
GCTTATGAAATATCAAAGAGGAGAAAAAAGTCCTAGGAACTCTGAGTGA

protein sequence of Gcaud2426.t1

>Gcaud2426.t1 ID=Gcaud2426.t1|Name=Gcaud2426.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=333bp
MRRSSSKLITRARSLRNVSKVPFKFKFDLLIETVDKLAAQGDVVVIWERS
NNKLHATKAVKIDKNTRKASFNNEKIATDITLFKSQPSERRFQEKVVKLA
VKQNNADGKTLGKIHLNLADYAEVPSGSKRICAELTNGAVLIATVQCQFL
SMGKTIQTKPGKSETNESSQDEEEADDDVESESNSVAADESPTGFLKNKL
KIARAGSKKLIGRSVGRQKADEENNMEVANTVDQQSFDQLRKENQRLRKQ
LEEAECNVGLPADAKRGDVAKALRNEVRELRNALAREPIYADVVKELKEA
KMALALLHLEKEEVLFELMKYQRGEKSPRNSE*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:24562..25560+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2426.t1 ID=Gcaud2426.t1|Name=Gcaud2426.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=999bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:24562..25560+ (Gracilaria caudata M_176_S67 male)
ATGAGGCGTTCTTCGTCGAAGTTGATTACTCGCGCAAGGAGTTTGCGAAA
TGTGAGCAAGGTTCCTTTCAAGTTCAAGTTCGACTTGCTTATCGAGACAG
TGGACAAACTTGCTGCTCAAGGAGATGTGGTCGTTATCTGGGAAAGGTCC
AATAACAAGCTTCATGCTACGAAAGCGGTTAAAATTGATAAGAACACGAG
GAAAGCATCCTTTAACAACGAAAAGATTGCCACTGATATCACCCTGTTTA
AGAGTCAACCATCAGAACGTCGATTCCAAGAGAAGGTTGTCAAATTAGCG
GTGAAGCAGAACAACGCCGATGGAAAAACGCTTGGAAAGATTCATCTCAA
CCTTGCCGATTACGCCGAGGTTCCTTCAGGGTCGAAACGAATCTGTGCCG
AACTAACGAATGGCGCTGTACTTATTGCCACAGTGCAATGCCAGTTTCTG
TCAATGGGAAAGACAATTCAAACGAAACCTGGAAAGTCTGAAACAAATGA
AAGCTCGCAAGACGAGGAAGAAGCTGATGACGATGTGGAGAGTGAGTCCA
ACTCTGTTGCTGCGGATGAGAGCCCTACTGGGTTTTTGAAGAACAAGCTG
AAGATTGCTCGTGCTGGATCAAAGAAACTAATTGGACGCAGCGTTGGTAG
ACAGAAGGCCGATGAGGAGAATAACATGGAAGTAGCAAACACTGTTGACC
AGCAAAGCTTTGATCAGTTGCGGAAGGAGAATCAAAGACTCAGGAAGCAA
TTGGAGGAAGCTGAGTGCAATGTCGGATTGCCTGCAGATGCTAAACGGGG
GGACGTAGCTAAGGCACTAAGGAACGAGGTCCGAGAGCTTCGAAACGCAC
TAGCAAGGGAACCAATCTACGCTGACGTCGTGAAAGAACTAAAAGAGGCG
AAGATGGCGTTGGCACTGCTTCACCTCGAAAAGGAAGAAGTTTTGTTTGA
GCTTATGAAATATCAAAGAGGAGAAAAAAGTCCTAGGAACTCTGAGTGA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:24562..25560+

>Gcaud2426.t1 ID=Gcaud2426.t1|Name=Gcaud2426.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=999bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:24562..25560+ (Gracilaria caudata M_176_S67 male)
ATGAGGCGTTCTTCGTCGAAGTTGATTACTCGCGCAAGGAGTTTGCGAAA
TGTGAGCAAGGTTCCTTTCAAGTTCAAGTTCGACTTGCTTATCGAGACAG
TGGACAAACTTGCTGCTCAAGGAGATGTGGTCGTTATCTGGGAAAGGTCC
AATAACAAGCTTCATGCTACGAAAGCGGTTAAAATTGATAAGAACACGAG
GAAAGCATCCTTTAACAACGAAAAGATTGCCACTGATATCACCCTGTTTA
AGAGTCAACCATCAGAACGTCGATTCCAAGAGAAGGTTGTCAAATTAGCG
GTGAAGCAGAACAACGCCGATGGAAAAACGCTTGGAAAGATTCATCTCAA
CCTTGCCGATTACGCCGAGGTTCCTTCAGGGTCGAAACGAATCTGTGCCG
AACTAACGAATGGCGCTGTACTTATTGCCACAGTGCAATGCCAGTTTCTG
TCAATGGGAAAGACAATTCAAACGAAACCTGGAAAGTCTGAAACAAATGA
AAGCTCGCAAGACGAGGAAGAAGCTGATGACGATGTGGAGAGTGAGTCCA
ACTCTGTTGCTGCGGATGAGAGCCCTACTGGGTTTTTGAAGAACAAGCTG
AAGATTGCTCGTGCTGGATCAAAGAAACTAATTGGACGCAGCGTTGGTAG
ACAGAAGGCCGATGAGGAGAATAACATGGAAGTAGCAAACACTGTTGACC
AGCAAAGCTTTGATCAGTTGCGGAAGGAGAATCAAAGACTCAGGAAGCAA
TTGGAGGAAGCTGAGTGCAATGTCGGATTGCCTGCAGATGCTAAACGGGG
GGACGTAGCTAAGGCACTAAGGAACGAGGTCCGAGAGCTTCGAAACGCAC
TAGCAAGGGAACCAATCTACGCTGACGTCGTGAAAGAACTAAAAGAGGCG
AAGATGGCGTTGGCACTGCTTCACCTCGAAAAGGAAGAAGTTTTGTTTGA
GCTTATGAAATATCAAAGAGGAGAAAAAAGTCCTAGGAACTCTGAGTGA