Gcaud1904.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1904.t1
Unique Name	Gcaud1904.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	255

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1086_length_13996_cov_4.532255	contig	NODE_1086_length_13996_cov_4.532255:6223..6987 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702949.1
PFAMs	Ferritin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00522
KEGG Pathway	ko04216,ko04217,ko04978,map04216,map04217,map04978
Evalue	6.94e-75
EggNOG OGs	COG1528@1\|root,KOG2332@2759\|Eukaryota
EC	1.16.3.2
Description	ferric iron binding
COG category	P
BRITE	ko00000,ko00001,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1904	Gcaud1904	Gracilaria caudata M_176_S67 male	gene	NODE_1086_length_13996_cov_4.532255 6223..6987 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1904.t1.start1	Gcaud1904.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1086_length_13996_cov_4.532255 6223..6225 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1904.t1.CDS1	Gcaud1904.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1086_length_13996_cov_4.532255 6223..6987 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1904.t1.exon1	Gcaud1904.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1086_length_13996_cov_4.532255 6223..6987 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1904.t1.stop1	Gcaud1904.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1086_length_13996_cov_4.532255 6985..6987 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1904.t1	Gcaud1904.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1086_length_13996_cov_4.532255 6223..6987 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1086_length_13996_cov_4.532255:6223..6987+
coding sequence from alignment at NODE_1086_length_13996_cov_4.532255:6223..6987+

mRNA sequence

>Gcaud1904.t1 ID=Gcaud1904.t1|Name=Gcaud1904.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp
MAAFVTPSVFSSGSSSFALRVSTARSTPFRASPTRFARVRSPVMGLDDVT
SIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRH
INVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQ
NRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLH
NVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDL
TLRE*

spliced messenger RNA

>Gcaud1904.t1 ID=Gcaud1904.t1|Name=Gcaud1904.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:6223..6987+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCTTTGTCACTCCATCCGTTTTTAGTTCGGGTTCATCCTCGTT
TGCCCTTCGTGTTTCTACAGCTCGATCGACCCCGTTCAGAGCTTCACCCA
CCCGTTTCGCTCGCGTACGCTCTCCAGTGATGGGCCTAGATGACGTCACT
TCAATCGACTTCAGCAAAGTGAACATCAACACCGCGGGAGAAAACCTTGC
CGGTCTCGTATTTACTCCAGAGTCTGAGACTGATGCCGTCGTGAAGACGC
GTGTGGATGTGGGTTACACAGCCAAGCAAGAGGATGCGGTCAACAGACAC
ATCAACGTCGAGTACACTGCTATGTACGCTTACCATGCCATCTGGTCCTA
TTTTGATCGCGACACAGTCGCACTACCGGGCTTCGCTCACTACTTCAATG
ATCAAAGCAAGGAGGAACGTGAGCATGCCCAAGAGTTTATGAAGTATCAG
AACCGTCGAGGTGGTACAGTGCAACTTCAACCAATTGCTGTGCCTGAAAT
GAAGTTCACCATGGAAGATGGCACCAGTGACGCCATTTACGCAATGGACT
TGCATCTACAGCTGGAGAAATTTGTGTACCATAAACTCATGGACCTCCAC
AATGTCGCCGGTGAAGCCAACGACCCCCAGATGCAAGACTTCGTTGAGCA
TTATCTCTCCCATCAGATTGGAGCCATTAAGACGGCAGCGGACTACGTCG
CCCAGCTTAAGAGAGTTGGCACACCCCATGGAGTGTACCACATTGACCTT
ACTCTTAGAGAGTAG

protein sequence of Gcaud1904.t1

>Gcaud1904.t1 ID=Gcaud1904.t1|Name=Gcaud1904.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MAAFVTPSVFSSGSSSFALRVSTARSTPFRASPTRFARVRSPVMGLDDVT
SIDFSKVNINTAGENLAGLVFTPESETDAVVKTRVDVGYTAKQEDAVNRH
INVEYTAMYAYHAIWSYFDRDTVALPGFAHYFNDQSKEEREHAQEFMKYQ
NRRGGTVQLQPIAVPEMKFTMEDGTSDAIYAMDLHLQLEKFVYHKLMDLH
NVAGEANDPQMQDFVEHYLSHQIGAIKTAADYVAQLKRVGTPHGVYHIDL
TLRE*

mRNA from alignment at NODE_1086_length_13996_cov_4.532255:6223..6987+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1904.t1 ID=Gcaud1904.t1|Name=Gcaud1904.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:6223..6987+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCCTTTGTCACTCCATCCGTTTTTAGTTCGGGTTCATCCTCGTT
TGCCCTTCGTGTTTCTACAGCTCGATCGACCCCGTTCAGAGCTTCACCCA
CCCGTTTCGCTCGCGTACGCTCTCCAGTGATGGGCCTAGATGACGTCACT
TCAATCGACTTCAGCAAAGTGAACATCAACACCGCGGGAGAAAACCTTGC
CGGTCTCGTATTTACTCCAGAGTCTGAGACTGATGCCGTCGTGAAGACGC
GTGTGGATGTGGGTTACACAGCCAAGCAAGAGGATGCGGTCAACAGACAC
ATCAACGTCGAGTACACTGCTATGTACGCTTACCATGCCATCTGGTCCTA
TTTTGATCGCGACACAGTCGCACTACCGGGCTTCGCTCACTACTTCAATG
ATCAAAGCAAGGAGGAACGTGAGCATGCCCAAGAGTTTATGAAGTATCAG
AACCGTCGAGGTGGTACAGTGCAACTTCAACCAATTGCTGTGCCTGAAAT
GAAGTTCACCATGGAAGATGGCACCAGTGACGCCATTTACGCAATGGACT
TGCATCTACAGCTGGAGAAATTTGTGTACCATAAACTCATGGACCTCCAC
AATGTCGCCGGTGAAGCCAACGACCCCCAGATGCAAGACTTCGTTGAGCA
TTATCTCTCCCATCAGATTGGAGCCATTAAGACGGCAGCGGACTACGTCG
CCCAGCTTAAGAGAGTTGGCACACCCCATGGAGTGTACCACATTGACCTT
ACTCTTAGAGAGTAG

Coding sequence (CDS) from alignment at NODE_1086_length_13996_cov_4.532255:6223..6987+

>Gcaud1904.t1 ID=Gcaud1904.t1|Name=Gcaud1904.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=765bp|location=Sequence derived from alignment at NODE_1086_length_13996_cov_4.532255:6223..6987+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCCTTTGTCACTCCATCCGTTTTTAGTTCGGGTTCATCCTCGTT
TGCCCTTCGTGTTTCTACAGCTCGATCGACCCCGTTCAGAGCTTCACCCA
CCCGTTTCGCTCGCGTACGCTCTCCAGTGATGGGCCTAGATGACGTCACT
TCAATCGACTTCAGCAAAGTGAACATCAACACCGCGGGAGAAAACCTTGC
CGGTCTCGTATTTACTCCAGAGTCTGAGACTGATGCCGTCGTGAAGACGC
GTGTGGATGTGGGTTACACAGCCAAGCAAGAGGATGCGGTCAACAGACAC
ATCAACGTCGAGTACACTGCTATGTACGCTTACCATGCCATCTGGTCCTA
TTTTGATCGCGACACAGTCGCACTACCGGGCTTCGCTCACTACTTCAATG
ATCAAAGCAAGGAGGAACGTGAGCATGCCCAAGAGTTTATGAAGTATCAG
AACCGTCGAGGTGGTACAGTGCAACTTCAACCAATTGCTGTGCCTGAAAT
GAAGTTCACCATGGAAGATGGCACCAGTGACGCCATTTACGCAATGGACT
TGCATCTACAGCTGGAGAAATTTGTGTACCATAAACTCATGGACCTCCAC
AATGTCGCCGGTGAAGCCAACGACCCCCAGATGCAAGACTTCGTTGAGCA
TTATCTCTCCCATCAGATTGGAGCCATTAAGACGGCAGCGGACTACGTCG
CCCAGCTTAAGAGAGTTGGCACACCCCATGGAGTGTACCACATTGACCTT
ACTCTTAGAGAGTAG