Gcaud8938.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8938.t1
Unique NameGcaud8938.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length83
Homology
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BLAST of Gcaud8938.t1 vs. uniprot
Match: A0A2V3J2X8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2X8_9FLOR)

HSP 1 Score: 131 bits (330), Expect = 2.050e-38
Identity = 64/82 (78.05%), Postives = 76/82 (92.68%), Query Frame = 0 
Query:    2 AKGVRLPKRSTIERLTQKGPECMLEMMAVLSCFKDSSFNEAKCAAQMRALNECVSRN-PAAKSKRKSTIFYHLKRLYYMQRR 82
            ++G RLPKR TIERLT++GPEC++EMMA+LSCFK+SSFNEAKCA QMRAL++CVSR  P AK+KRKST+FYHLKRLYYMQRR
Sbjct:    5 SRGPRLPKRRTIERLTKRGPECVMEMMALLSCFKESSFNEAKCAGQMRALHDCVSRKVPEAKNKRKSTVFYHLKRLYYMQRR 86
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BLAST of Gcaud8938.t1 vs. uniprot
Match: R7QJK4_CHOCR (CHCH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJK4_CHOCR)

HSP 1 Score: 130 bits (326), Expect = 7.900e-38
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 0 
Query:    2 AKGVRLPKRSTIERLTQKGPECMLEMMAVLSCFKDSSFNEAKCAAQMRALNECVSRNPAAKSKRKSTIFYHLKRLYYMQRR 82
            A+G +LPKRS IERLT+KGPEC+ EMMA+LSCFKDS+FNEA+CA QMR+L+ECVSR P AKSK KST+FYHLKRLYYMQRR
Sbjct:    5 ARGPKLPKRSAIERLTRKGPECLPEMMAMLSCFKDSNFNEARCAGQMRSLSECVSRQPEAKSK-KSTVFYHLKRLYYMQRR 84
The following BLAST results are available for this feature:
BLAST of Gcaud8938.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J2X8_9FLOR2.050e-3878.05Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QJK4_CHOCR7.900e-3879.01CHCH domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 17..75
e-value: 1.4E-6
score: 30.1
NoneNo IPR availablePANTHERPTHR28066:SF137S RIBOSOMAL PROTEIN MRP10, MITOCHONDRIALcoord: 18..79
NoneNo IPR availablePROSITEPS51808CHCHcoord: 20..62
score: 13.791174
IPR017264Ribosomal protein MRP10, mitochondrialPANTHERPTHR2806637S RIBOSOMAL PROTEIN MRP10, MITOCHONDRIALcoord: 18..79
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 21..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_280_length_32368_cov_4.320445contigNODE_280_length_32368_cov_4.320445:26400..26763 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8938.t1Gcaud8938.t1Gracilaria caudata M_176_S67 malemRNANODE_280_length_32368_cov_4.320445 26400..26763 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8938.t1 ID=Gcaud8938.t1|Name=Gcaud8938.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=83bp
MAKGVRLPKRSTIERLTQKGPECMLEMMAVLSCFKDSSFNEAKCAAQMRA
LNECVSRNPAAKSKRKSTIFYHLKRLYYMQRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017264Ribosomal_MRP10_mt
IPR009069Cys_alpha_HP_mot_SF