Gcaud7655.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7655.t2
Unique NameGcaud7655.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_273_length_32656_cov_4.516229contigNODE_273_length_32656_cov_4.516229:6623..7282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7655Gcaud7655Gracilaria caudata M_176_S67 malegeneNODE_273_length_32656_cov_4.516229 6623..8307 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7655.t2.stop1Gcaud7655.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_273_length_32656_cov_4.516229 6623..6625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7655.t2.CDS1Gcaud7655.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 6623..7282 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7655.t2.exon1Gcaud7655.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 6623..7282 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7655.t2.start1Gcaud7655.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_273_length_32656_cov_4.516229 7280..7282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7655.t2Gcaud7655.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_273_length_32656_cov_4.516229 6623..7282 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7655.t2 ID=Gcaud7655.t2|Name=Gcaud7655.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=220bp
LGGSRSWIQCKGHFRNLFAVGRITRGNDESKSWIVHPDVNGKEKEETTKP
SAEEKAKSQGKTSKHTSPRNSSNGTANGNLKDAIVSTSNPRESDDNISVG
KTQAKTTNGEVRRSASIDSIINPTSQDENELSASNMQNPHNQLNREHGPP
DYHVSHKNNAEATKKVYVVPQSTRVSEQQDFEVSRIRETAIFMSKQAAAK
EAYERSNCEPAGEKDLRRV*
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spliced messenger RNA

>Gcaud7655.t2 ID=Gcaud7655.t2|Name=Gcaud7655.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:6623..7282- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGGCGGGTCAAGAAGCTGGATTCAATGCAAGGGACACTTCCGAAATTT
ATTTGCTGTTGGGAGAATCACTCGTGGCAACGATGAGTCAAAATCATGGA
TAGTACATCCAGATGTGAATGGAAAAGAGAAAGAGGAGACAACAAAACCC
TCTGCAGAAGAGAAAGCAAAGAGTCAAGGAAAGACTTCAAAGCACACCTC
TCCTAGGAATTCGTCGAATGGCACTGCTAATGGTAATCTGAAAGATGCTA
TTGTGTCTACTTCGAACCCCCGTGAGTCTGACGACAACATTAGCGTGGGA
AAGACCCAAGCTAAGACTACTAATGGTGAAGTTCGAAGAAGTGCTAGTAT
TGATTCGATCATAAACCCTACGTCGCAGGATGAGAATGAACTAAGTGCAT
CCAACATGCAAAACCCACATAATCAACTGAACAGAGAACATGGGCCCCCC
GATTATCATGTGTCACATAAAAACAATGCTGAAGCAACGAAGAAGGTGTA
TGTGGTCCCGCAGAGCACCAGAGTCTCCGAGCAACAAGATTTCGAAGTTT
CTCGAATTAGGGAGACCGCTATTTTCATGAGCAAGCAGGCAGCTGCCAAA
GAAGCATATGAGCGATCAAACTGTGAGCCTGCAGGAGAGAAGGATCTCCG
GAGAGTTTGA
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protein sequence of Gcaud7655.t2

>Gcaud7655.t2 ID=Gcaud7655.t2|Name=Gcaud7655.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
LGGSRSWIQCKGHFRNLFAVGRITRGNDESKSWIVHPDVNGKEKEETTKP
SAEEKAKSQGKTSKHTSPRNSSNGTANGNLKDAIVSTSNPRESDDNISVG
KTQAKTTNGEVRRSASIDSIINPTSQDENELSASNMQNPHNQLNREHGPP
DYHVSHKNNAEATKKVYVVPQSTRVSEQQDFEVSRIRETAIFMSKQAAAK
EAYERSNCEPAGEKDLRRV*
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mRNA from alignment at NODE_273_length_32656_cov_4.516229:6623..7282-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7655.t2 ID=Gcaud7655.t2|Name=Gcaud7655.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:6623..7282- (Gracilaria caudata M_176_S67 male)
TTGGGCGGGTCAAGAAGCTGGATTCAATGCAAGGGACACTTCCGAAATTT
ATTTGCTGTTGGGAGAATCACTCGTGGCAACGATGAGTCAAAATCATGGA
TAGTACATCCAGATGTGAATGGAAAAGAGAAAGAGGAGACAACAAAACCC
TCTGCAGAAGAGAAAGCAAAGAGTCAAGGAAAGACTTCAAAGCACACCTC
TCCTAGGAATTCGTCGAATGGCACTGCTAATGGTAATCTGAAAGATGCTA
TTGTGTCTACTTCGAACCCCCGTGAGTCTGACGACAACATTAGCGTGGGA
AAGACCCAAGCTAAGACTACTAATGGTGAAGTTCGAAGAAGTGCTAGTAT
TGATTCGATCATAAACCCTACGTCGCAGGATGAGAATGAACTAAGTGCAT
CCAACATGCAAAACCCACATAATCAACTGAACAGAGAACATGGGCCCCCC
GATTATCATGTGTCACATAAAAACAATGCTGAAGCAACGAAGAAGGTGTA
TGTGGTCCCGCAGAGCACCAGAGTCTCCGAGCAACAAGATTTCGAAGTTT
CTCGAATTAGGGAGACCGCTATTTTCATGAGCAAGCAGGCAGCTGCCAAA
GAAGCATATGAGCGATCAAACTGTGAGCCTGCAGGAGAGAAGGATCTCCG
GAGAGTTTGA
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Coding sequence (CDS) from alignment at NODE_273_length_32656_cov_4.516229:6623..7282-

>Gcaud7655.t2 ID=Gcaud7655.t2|Name=Gcaud7655.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=660bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:6623..7282- (Gracilaria caudata M_176_S67 male)
TTGGGCGGGTCAAGAAGCTGGATTCAATGCAAGGGACACTTCCGAAATTT
ATTTGCTGTTGGGAGAATCACTCGTGGCAACGATGAGTCAAAATCATGGA
TAGTACATCCAGATGTGAATGGAAAAGAGAAAGAGGAGACAACAAAACCC
TCTGCAGAAGAGAAAGCAAAGAGTCAAGGAAAGACTTCAAAGCACACCTC
TCCTAGGAATTCGTCGAATGGCACTGCTAATGGTAATCTGAAAGATGCTA
TTGTGTCTACTTCGAACCCCCGTGAGTCTGACGACAACATTAGCGTGGGA
AAGACCCAAGCTAAGACTACTAATGGTGAAGTTCGAAGAAGTGCTAGTAT
TGATTCGATCATAAACCCTACGTCGCAGGATGAGAATGAACTAAGTGCAT
CCAACATGCAAAACCCACATAATCAACTGAACAGAGAACATGGGCCCCCC
GATTATCATGTGTCACATAAAAACAATGCTGAAGCAACGAAGAAGGTGTA
TGTGGTCCCGCAGAGCACCAGAGTCTCCGAGCAACAAGATTTCGAAGTTT
CTCGAATTAGGGAGACCGCTATTTTCATGAGCAAGCAGGCAGCTGCCAAA
GAAGCATATGAGCGATCAAACTGTGAGCCTGCAGGAGAGAAGGATCTCCG
GAGAGTTTGA
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