Gcaud7655.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7655.t1
Unique NameGcaud7655.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length495
Homology
BLAST of Gcaud7655.t1 vs. uniprot
Match: A0A2V3IES1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IES1_9FLOR)

HSP 1 Score: 234 bits (598), Expect = 2.340e-68
Identity = 174/455 (38.24%), Postives = 241/455 (52.97%), Query Frame = 0
Query:   56 MSHRAPHLNEKTETLWFVTMREVAFHFSKIGEAIDQYANETERLVQSHQGGDACNQSAK--SPSNVNRQLHGNGVNGHQQSIGQCPNGNRALHYQNDRNGYSVAINDSGHSNSKP-----RRVRQPPIYPNTYVDGQQVQMPIGSFGLKRSPPLSVSELDHRSRQPFQVVPLERPENVRAYLQPRFPRPHKRIRINWTEEEDSLFFDTIRKNSTKDEQTVLREIVSALGGSRSWIQCKGHFRNLFAVGRITRGNDESKSWIVHPDVNGKEKEETTKP------SAEEKAKSQXXXXXXXXXXXXXXXXXXGNLKD-----AIVSTSNPRESDDNISVGKTQAKTTNGEVRRSASIDSIINPTSQDENELSASNMQNPHNQLNREHGPPDYHVSHKNNAEATKKVYVVPQSTRVSEQQDFEVSRIRETAIFMSKQAAAKEAYERSNCEPAGEKDLR 492
            MS   P++ E+T++LWF T+REVAFHF KIGE I+  A ETER+++ ++   +  QS K   P+        N +     +  Q PNG    H Q+         +   H NS+P     R   Q P +PN   D  Q+  P   + LKR   +S+ EL+ R+R P Q+V   R +N+R  L PR PRP+KRIR NWT+ E++LFFD I+KN+ +DE TVLRE VSAL GSRSW+QCKGHFRNL +VG+IT+     + W VH + + K +E    P      S  E+ + +                   N ++       V+T    E  DNI         T  +  RSASID +IN  SQ+ +   A  M +  N ++ +    +     + N+  +   + V  S  VS +QD  V R RETAIFMSKQAAAKEA+ERSN +   E D+R
Sbjct:    1 MSSTHPNVCEETDSLWFDTLREVAFHFVKIGETIEHCAVETERIIRGNEERASLQQSRKCSGPARGMELPPSNTIYMKGNARPQAPNG---AHSQD-------VHHPQRHENSEPVLALNRFAHQTP-FPNRPYD--QIT-PTQGYTLKRYSSVSLPELEQRTRTPLQLVTAGRRDNIRTLLNPRGPRPNKRIRNNWTDAENALFFDIIKKNANEDETTVLREAVSALHGSRSWVQCKGHFRNLLSVGKITQNKKGRQLWEVHEEASIKSEEAPRIPTKALTSSKYEEPRGKSVKANGSHISSTAPQSSTHNQENNPSSATNVNTRKKTERQDNIQNNFRNG--TGAKTGRSASIDCLINNISQERDNRKAQ-MLHRTNAVDGDQSQREIIGRPRENSIRSNDAHFVAGSEGVSGEQDVIVGRDRETAIFMSKQAAAKEAFERSNPDATRESDIR 438          
BLAST of Gcaud7655.t1 vs. uniprot
Match: R7QLJ1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLJ1_CHOCR)

HSP 1 Score: 114 bits (284), Expect = 1.200e-23
Identity = 86/294 (29.25%), Postives = 137/294 (46.60%), Query Frame = 0
Query:   64 NEKTETLWFVTMREVAFHFSKIGEAIDQYANETERLVQSHQGGDACNQSAKSPSNVNRQLHGNGVNGHQQS----------------IGQCPNGNRALHYQNDRNGYSVAINDSGHSNSKPRRVRQPPIYPNT-------YVDGQQVQMPIGSFGLKRSPPLSVSELDHRSRQPFQVVPLERPENVRAYLQPRFPRPHKRIRINWTEEEDSLFFDTIRKNSTKDEQTVLREIVSALGGSRSWIQCKGHFRNLFAVGRITRGNDESKSWIVHPDVNGKEKEETTKPSAEEKAKSQ 334
            + + + LW  T+R +A+H SKIG+ I + A++TE+LV  HQ       +AKS  ++ R+         Q                  +G  P         + R+   V          +P      P YP         + D Q        F  KR       ++DH + +       E  EN+     PR     KR+RINWT +E+ +FFDT+R+++T DEQ+++R IV+ +GG R+W QCKGHFRNL  V +I+  ++++K W V+PD     +  +T     E++ S+
Sbjct:    5 DRQRDLLWLHTVRGIAYHVSKIGDLIGKCADDTEKLV--HQNLPLDPYAAKSAPHLEREQDDMSARQRQPHWAWRRAPAITPKAPNVVGPAPPDVMPPPTHSSRHNGLVP---------RPSPYYYQPEYPPASLQRRFVHPDHQMDDHDFDRFARKRPSSAPNGDMDHYASR-------EGDENM-----PRL----KRVRINWTNQENGIFFDTVRRSATLDEQSLIRAIVANMGGKRNWTQCKGHFRNLVFVNKISL-DEKTKKWSVNPDAKRPMRTSSTSGRGSEQSASE 270          
BLAST of Gcaud7655.t1 vs. uniprot
Match: A0A7S0ZF12_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZF12_9RHOD)

HSP 1 Score: 62.8 bits (151), Expect = 4.920e-7
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 0
Query:  239 KRIRINWTEEEDSLFFDTIRKNSTKDEQTVLREIVSALGGSRSWIQCKGHFRNLFAVGRIT------------RGNDESKSWIVHPDVNGKEKEETTKPSAEEKA 331
            KR+R+NWT EE+ +    I+ N  +  + VL EI   L G RS  QCKGH RNL    R+             + +DE + ++   D    E +E TK S E+ A
Sbjct:  230 KRMRMNWTHEEEDVVKQIIKDNEGQTYKVVLGEIQKQLDGKRSQTQCKGHLRNLLKSNRVKMDESTSLFWNHDKKDDEDEQFLATIDNTSMETDEKTKKSLEKSA 334          
The following BLAST results are available for this feature:
BLAST of Gcaud7655.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IES1_9FLOR2.340e-6838.24Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QLJ1_CHOCR1.200e-2329.25Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZF12_9RHOD4.920e-735.24Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..336
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..438
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 421..435
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 338..419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 244..293
e-value: 1.18447E-4
score: 37.555
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 240..295

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_273_length_32656_cov_4.516229contigNODE_273_length_32656_cov_4.516229:6623..8307 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7655.t1Gcaud7655.t1Gracilaria caudata M_176_S67 malemRNANODE_273_length_32656_cov_4.516229 6623..8307 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7655.t1 ID=Gcaud7655.t1|Name=Gcaud7655.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=495bp
MPKFTPNPPFPTSRSRGEADNTLRPMPPDSNPFLGDPLHQTTNAIAYLTG
PRPPNMSHRAPHLNEKTETLWFVTMREVAFHFSKIGEAIDQYANETERLV
QSHQGGDACNQSAKSPSNVNRQLHGNGVNGHQQSIGQCPNGNRALHYQND
RNGYSVAINDSGHSNSKPRRVRQPPIYPNTYVDGQQVQMPIGSFGLKRSP
PLSVSELDHRSRQPFQVVPLERPENVRAYLQPRFPRPHKRIRINWTEEED
SLFFDTIRKNSTKDEQTVLREIVSALGGSRSWIQCKGHFRNLFAVGRITR
GNDESKSWIVHPDVNGKEKEETTKPSAEEKAKSQGKTSKHTSPRNSSNGT
ANGNLKDAIVSTSNPRESDDNISVGKTQAKTTNGEVRRSASIDSIINPTS
QDENELSASNMQNPHNQLNREHGPPDYHVSHKNNAEATKKVYVVPQSTRV
SEQQDFEVSRIRETAIFMSKQAAAKEAYERSNCEPAGEKDLRRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf