Gcaud2330.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2330.t1
Unique NameGcaud2330.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1080_length_14143_cov_5.034515contigNODE_1080_length_14143_cov_5.034515:7063..7575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog436229.JOEH01000037_gene2670
PFAMsRibonuc_L-PSP
Max annot lvl201174|Actinobacteria
Evalue5.24e-11
EggNOG OGsCOG0251@1|root,COG0251@2|Bacteria,2IHP3@201174|Actinobacteria
Descriptionendoribonuclease L-PSP
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2330Gcaud2330Gracilaria caudata M_176_S67 malegeneNODE_1080_length_14143_cov_5.034515 7063..7575 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2330.t1.start1Gcaud2330.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1080_length_14143_cov_5.034515 7063..7065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2330.t1.CDS1Gcaud2330.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1080_length_14143_cov_5.034515 7063..7575 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2330.t1.exon1Gcaud2330.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1080_length_14143_cov_5.034515 7063..7575 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2330.t1.stop1Gcaud2330.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1080_length_14143_cov_5.034515 7573..7575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2330.t1Gcaud2330.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1080_length_14143_cov_5.034515 7063..7575 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2330.t1 ID=Gcaud2330.t1|Name=Gcaud2330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MHFHLLLRFFALAIALQTAQASFFCTGRGGPRLVTINPPTLFDPLPFGFS
QIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVES
SIADILRVNAFIVNLDPSTSAASFMETGMRLGSPVTTLVSTGSLALEGLL
AEIELDVAVSKSFVRRLVCT*
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spliced messenger RNA

>Gcaud2330.t1 ID=Gcaud2330.t1|Name=Gcaud2330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:7063..7575+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTTCCACCTCCTGCTTCGTTTTTTCGCCCTTGCGATAGCCCTTCA
GACTGCTCAAGCTTCTTTCTTTTGCACGGGACGTGGAGGTCCGCGCCTCG
TCACCATCAATCCACCCACTTTGTTTGACCCCTTGCCTTTTGGCTTTTCT
CAAATTATCGTCGACAGGAAGAACGCAGTAGCACATATTGCGGGGCAAAC
CGCTATCAATCAAACCGGTTCTATCGTCGGCGAGACTCTTCCCGAACAAC
TAATGGAAATCGAAAACAACATCATGTTTGCTCTGGAAACAGTTGAGTCC
AGCATTGCCGACATTTTGAGAGTTAATGCTTTCATAGTCAACCTTGATCC
GAGCACAAGTGCTGCTTCGTTCATGGAAACTGGTATGAGACTGGGAAGCC
CTGTCACTACCCTCGTTTCGACGGGCTCTCTTGCACTCGAAGGTTTACTT
GCTGAAATTGAGTTGGATGTAGCCGTTTCCAAATCTTTTGTCAGACGTCT
AGTATGTACTTGA
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protein sequence of Gcaud2330.t1

>Gcaud2330.t1 ID=Gcaud2330.t1|Name=Gcaud2330.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MHFHLLLRFFALAIALQTAQASFFCTGRGGPRLVTINPPTLFDPLPFGFS
QIIVDRKNAVAHIAGQTAINQTGSIVGETLPEQLMEIENNIMFALETVES
SIADILRVNAFIVNLDPSTSAASFMETGMRLGSPVTTLVSTGSLALEGLL
AEIELDVAVSKSFVRRLVCT*
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mRNA from alignment at NODE_1080_length_14143_cov_5.034515:7063..7575+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2330.t1 ID=Gcaud2330.t1|Name=Gcaud2330.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:7063..7575+ (Gracilaria caudata M_176_S67 male)
ATGCACTTCCACCTCCTGCTTCGTTTTTTCGCCCTTGCGATAGCCCTTCA
GACTGCTCAAGCTTCTTTCTTTTGCACGGGACGTGGAGGTCCGCGCCTCG
TCACCATCAATCCACCCACTTTGTTTGACCCCTTGCCTTTTGGCTTTTCT
CAAATTATCGTCGACAGGAAGAACGCAGTAGCACATATTGCGGGGCAAAC
CGCTATCAATCAAACCGGTTCTATCGTCGGCGAGACTCTTCCCGAACAAC
TAATGGAAATCGAAAACAACATCATGTTTGCTCTGGAAACAGTTGAGTCC
AGCATTGCCGACATTTTGAGAGTTAATGCTTTCATAGTCAACCTTGATCC
GAGCACAAGTGCTGCTTCGTTCATGGAAACTGGTATGAGACTGGGAAGCC
CTGTCACTACCCTCGTTTCGACGGGCTCTCTTGCACTCGAAGGTTTACTT
GCTGAAATTGAGTTGGATGTAGCCGTTTCCAAATCTTTTGTCAGACGTCT
AGTATGTACTTGA
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Coding sequence (CDS) from alignment at NODE_1080_length_14143_cov_5.034515:7063..7575+

>Gcaud2330.t1 ID=Gcaud2330.t1|Name=Gcaud2330.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:7063..7575+ (Gracilaria caudata M_176_S67 male)
ATGCACTTCCACCTCCTGCTTCGTTTTTTCGCCCTTGCGATAGCCCTTCA
GACTGCTCAAGCTTCTTTCTTTTGCACGGGACGTGGAGGTCCGCGCCTCG
TCACCATCAATCCACCCACTTTGTTTGACCCCTTGCCTTTTGGCTTTTCT
CAAATTATCGTCGACAGGAAGAACGCAGTAGCACATATTGCGGGGCAAAC
CGCTATCAATCAAACCGGTTCTATCGTCGGCGAGACTCTTCCCGAACAAC
TAATGGAAATCGAAAACAACATCATGTTTGCTCTGGAAACAGTTGAGTCC
AGCATTGCCGACATTTTGAGAGTTAATGCTTTCATAGTCAACCTTGATCC
GAGCACAAGTGCTGCTTCGTTCATGGAAACTGGTATGAGACTGGGAAGCC
CTGTCACTACCCTCGTTTCGACGGGCTCTCTTGCACTCGAAGGTTTACTT
GCTGAAATTGAGTTGGATGTAGCCGTTTCCAAATCTTTTGTCAGACGTCT
AGTATGTACTTGA
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