|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 44056.XP_009034442.1 |
| PFAMs | Mito_carr |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K13577,ko:K15103,ko:K15106 |
| KEGG TC | 2.A.29.2.2,2.A.29.2.3,2.A.29.2.7,2.A.29.24,2.A.29.3.3,2.A.29.3.4,2.A.29.3.5 |
| KEGG Pathway | ko04964,map04964 |
| GOs | GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085 |
| Evalue | 3.62e-30 |
| EggNOG OGs | KOG0759@1|root,KOG0753@2759|Eukaryota |
| Description | oxidative phosphorylation uncoupler activity |
| COG category | U |
| BRITE | ko00000,ko00001,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2770.t1.start1 | Gcaud2770.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_267_length_32960_cov_4.559859 3124..3126 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2770.t1.stop1 | Gcaud2770.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_267_length_32960_cov_4.559859 3985..3987 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2770.t1 ID=Gcaud2770.t1|Name=Gcaud2770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=220bp
LPEPPVSPRIAATLVTPPIDTLKLRTQLRGLSARAPPIAATHGLYAGLSP
ALLRAATYSATRLGLYHPLRASFAVVAGVDAREPPLHVKLAACVASGVAG
AVVGNPCELIKLLSYDHVKTMLKKRVHMSEGVRMHFAAAMVAGLVTTTVS
TPADVVKSLVMHSKPTRSSVECARLVLATDGMRGFMRGWVANYARLGPNS
LITFVVYERLRTTFGLTNI* back to topspliced messenger RNA >Gcaud2770.t1 ID=Gcaud2770.t1|Name=Gcaud2770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:3124..3987+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
TTGCCGGAGCCTCCAGTCTCACCGCGCATCGCAGCCACGCTCGTCACGCC
CCCCATCGACACGCTAAAGCTCCGCACCCAGCTCCGCGGTCTAAGCGCAC
GTGCACCGCCAATCGCCGCGACACACGGTCTGTACGCGGGGTTATCACCC
GCGCTGCTTCGCGCCGCCACGTACAGTGCCACCCGTCTGGGTCTCTACCA
CCCGCTCCGCGCATCGTTTGCCGTCGTCGCTGGCGTCGATGCTCGTGAAC
CGCCGCTGCACGTCAAGCTTGCGGCGTGCGTGGCGTCCGGCGTTGCCGGT
GCCGTTGTGGGAAACCCTTGCGAACTTATCAAGCTCTTGTCGTATGATCA
TGTCAAGACCATGCTGAAGAAGCGCGTGCATATGAGCGAGGGTGTGCGAA
TGCATTTCGCTGCTGCTATGGTGGCTGGGCTTGTCACTACCACCGTCAGC
ACGCCGGCTGACGTTGTCAAGTCGCTCGTTATGCACTCCAAGCCCACGCG
CTCGTCGGTCGAGTGTGCGCGCCTTGTTCTCGCTACTGACGGCATGCGCG
GCTTCATGCGCGGCTGGGTAGCCAACTACGCGCGTCTCGGCCCAAATTCG
CTCATCACGTTCGTCGTGTACGAGCGCCTGCGCACTACCTTCGGTCTCAC
TAACATCTAG back to topprotein sequence of Gcaud2770.t1 >Gcaud2770.t1 ID=Gcaud2770.t1|Name=Gcaud2770.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
LPEPPVSPRIAATLVTPPIDTLKLRTQLRGLSARAPPIAATHGLYAGLSP
ALLRAATYSATRLGLYHPLRASFAVVAGVDAREPPLHVKLAACVASGVAG
AVVGNPCELIKLLSYDHVKTMLKKRVHMSEGVRMHFAAAMVAGLVTTTVS
TPADVVKSLVMHSKPTRSSVECARLVLATDGMRGFMRGWVANYARLGPNS
LITFVVYERLRTTFGLTNI* back to topmRNA from alignment at NODE_267_length_32960_cov_4.559859:3124..3987+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2770.t1 ID=Gcaud2770.t1|Name=Gcaud2770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=864bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:3124..3987+ (Gracilaria caudata M_176_S67 male)
TTGCCGGAGCCTCCAGTCTCACCGGTACGTCCGCCACGCCCAACCCCACC
GCGCAAACCACGCGAACCCACACTGACAGATAGCGCATCGCAGCCACGCT
CGTCACGCCCCCCATCGACACGCTAAAGCTCCGCACCCAGCTCCGCGGTC
TAAGCGCACGTGCACCGCCAATCGCCGCGACACACGGTCTGTACGCGGGG
TTATCACCCGCGCTGCTTCGCGCCGCCACGTACAGTGCCACCCGTCTGGG
TCTCTACCACCCGCTCCGCGCATCGTTTGCCGTCGTCGCTGGCGTCGATG
CTCGTGAACCGCCGCTGCACGTCAAGCTTGCGGCGTGCGTGGCGTCCGGC
GTTGCCGGTGCCGTTGTGGGAAACCCTTGCGAACTTATCAAGGTGCGTAT
GCAGCACGCCGATAACCGCGCGTACGACGGCGTACGGCACGCGTTGGCCA
CCATTGTGACGTCGCGCAGGCCCGCTCGCGCTGTGGACCGGAACGTATGC
TAACGCGCTGCGCGCTGTGCTGCTAACTGCGTCGCAGCTCTTGTCGTATG
ATCATGTCAAGACCATGCTGAAGAAGCGCGTGCATATGAGCGAGGGTGTG
CGAATGCATTTCGCTGCTGCTATGGTGGCTGGGCTTGTCACTACCACCGT
CAGCACGCCGGCTGACGTTGTCAAGTCGCTCGTTATGCACTCCAAGCCCA
CGCGCTCGTCGGTCGAGTGTGCGCGCCTTGTTCTCGCTACTGACGGCATG
CGCGGCTTCATGCGCGGCTGGGTAGCCAACTACGCGCGTCTCGGCCCAAA
TTCGCTCATCACGTTCGTCGTGTACGAGCGCCTGCGCACTACCTTCGGTC
TCACTAACATCTAG back to topCoding sequence (CDS) from alignment at NODE_267_length_32960_cov_4.559859:3124..3987+ >Gcaud2770.t1 ID=Gcaud2770.t1|Name=Gcaud2770.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=660bp|location=Sequence derived from alignment at NODE_267_length_32960_cov_4.559859:3124..3987+ (Gracilaria caudata M_176_S67 male)
TTGCCGGAGCCTCCAGTCTCACCGCGCATCGCAGCCACGCTCGTCACGCC
CCCCATCGACACGCTAAAGCTCCGCACCCAGCTCCGCGGTCTAAGCGCAC
GTGCACCGCCAATCGCCGCGACACACGGTCTGTACGCGGGGTTATCACCC
GCGCTGCTTCGCGCCGCCACGTACAGTGCCACCCGTCTGGGTCTCTACCA
CCCGCTCCGCGCATCGTTTGCCGTCGTCGCTGGCGTCGATGCTCGTGAAC
CGCCGCTGCACGTCAAGCTTGCGGCGTGCGTGGCGTCCGGCGTTGCCGGT
GCCGTTGTGGGAAACCCTTGCGAACTTATCAAGCTCTTGTCGTATGATCA
TGTCAAGACCATGCTGAAGAAGCGCGTGCATATGAGCGAGGGTGTGCGAA
TGCATTTCGCTGCTGCTATGGTGGCTGGGCTTGTCACTACCACCGTCAGC
ACGCCGGCTGACGTTGTCAAGTCGCTCGTTATGCACTCCAAGCCCACGCG
CTCGTCGGTCGAGTGTGCGCGCCTTGTTCTCGCTACTGACGGCATGCGCG
GCTTCATGCGCGGCTGGGTAGCCAACTACGCGCGTCTCGGCCCAAATTCG
CTCATCACGTTCGTCGTGTACGAGCGCCTGCGCACTACCTTCGGTCTCAC
TAACATCTAG back to top
|