Gcaud8481.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8481.t1
Unique Name	Gcaud8481.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2653_length_5042_cov_6.430822	contig	NODE_2653_length_5042_cov_6.430822:4201..5028 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	135651.CBN08050
Preferred name	SPATA5
PFAMs	AAA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K13525,ko:K14575
KEGG TC	3.A.16.1
KEGG Pathway	ko03008,ko04141,ko05134,map03008,map04141,map05134
KEGG Module	M00400,M00403
GOs	GO:0001655,GO:0001657,GO:0001658,GO:0001763,GO:0001822,GO:0001823,GO:0001932,GO:0001933,GO:0002009,GO:0003674,GO:0003824,GO:0004857,GO:0004860,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006469,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009892,GO:0010563,GO:0010594,GO:0010595,GO:0010605,GO:0010632,GO:0010634,GO:0010941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022603,GO:0030234,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0033673,GO:0035239,GO:0035295,GO:0040012,GO:0040017,GO:0042325,GO:0042326,GO:0043086,GO:0043535,GO:0043536,GO:0043549,GO:0044092,GO:0044424,GO:0044464,GO:0044877,GO:0045765,GO:0045766,GO:0045859,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050839,GO:0051094,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051338,GO:0051348,GO:0060255,GO:0060322,GO:0060429,GO:0060548,GO:0060562,GO:0060675,GO:0060993,GO:0061138,GO:0061326,GO:0061333,GO:0065007,GO:0065009,GO:0072001,GO:0072006,GO:0072009,GO:0072028,GO:0072073,GO:0072078,GO:0072080,GO:0072088,GO:0072163,GO:0072164,GO:0072171,GO:0080090,GO:0090049,GO:0090050,GO:0098772,GO:1901342,GO:1903670,GO:1903672,GO:1904018,GO:2000026,GO:2000145,GO:2000147
Evalue	1.21e-53
EggNOG OGs	COG0464@1\|root,KOG0730@2759\|Eukaryota,38CYE@33154\|Opisthokonta,3BB5Y@33208\|Metazoa,3D48G@33213\|Bilateria,40BGK@6231\|Nematoda,1KTTK@119089\|Chromadorea,40TVW@6236\|Rhabditida
Description	ATPase family associated with various cellular activities (AAA)
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03009,ko03019,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8481	Gcaud8481	Gracilaria caudata M_176_S67 male	gene	NODE_2653_length_5042_cov_6.430822 4201..5028 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8481.t1.stop1	Gcaud8481.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2653_length_5042_cov_6.430822 4201..4203 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8481.t1.CDS1	Gcaud8481.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2653_length_5042_cov_6.430822 4201..5028 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8481.t1.exon1	Gcaud8481.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2653_length_5042_cov_6.430822 4201..5028 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8481.t1.start1	Gcaud8481.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2653_length_5042_cov_6.430822 5026..5028 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8481.t1	Gcaud8481.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2653_length_5042_cov_6.430822 4201..5028 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2653_length_5042_cov_6.430822:4201..5028-
coding sequence from alignment at NODE_2653_length_5042_cov_6.430822:4201..5028-

mRNA sequence

>Gcaud8481.t1 ID=Gcaud8481.t1|Name=Gcaud8481.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=276bp
MFISTNVTTQEYSATDWGRHAGYNLVKKQLMRLCEWPFVHRETFKRLGVP
PPRGVLLYGPHGVGKTLLAESLLRRLTSVNSIRISATEVFSKYLGESEAL
VRRLFARARMLSPCVVFIDDIDAVGQRGDEESSGVEGRVVASLLTELDGV
HGEDVFVLACAADLMSLDPAMVRPGRIDNTIKLELPDKENRKCILDMVLK
DISVSCGGDRPLIEWLVDETEGITGAELVSLCDEAGMIAIEEEETETECV
REKHFREAIAQYARMKASSKVTASG*

spliced messenger RNA

>Gcaud8481.t1 ID=Gcaud8481.t1|Name=Gcaud8481.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:4201..5028- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATCTCCACAAACGTAACAACGCAAGAATATTCTGCAACAGACTG
GGGCCGTCACGCCGGTTATAACTTGGTAAAGAAACAACTCATGCGCTTGT
GCGAATGGCCGTTCGTTCATCGCGAAACATTCAAACGTCTGGGAGTACCA
CCTCCAAGAGGCGTCTTGCTATACGGACCACATGGCGTTGGTAAAACACT
TCTTGCTGAGTCATTGCTGCGCAGATTGACAAGCGTAAACAGCATTCGTA
TCAGTGCGACTGAAGTGTTCTCGAAGTATCTAGGGGAATCTGAGGCTCTT
GTACGCCGTCTGTTTGCACGTGCCAGGATGCTCAGTCCTTGCGTCGTGTT
TATTGATGATATTGATGCGGTGGGACAACGGGGTGATGAGGAATCAAGCG
GGGTTGAGGGACGCGTGGTTGCTTCATTGCTCACGGAGCTTGATGGGGTT
CATGGGGAGGACGTTTTCGTTCTGGCCTGTGCGGCGGACCTGATGAGTCT
TGACCCCGCAATGGTGCGTCCCGGGCGAATCGACAACACTATCAAGCTTG
AGTTGCCAGACAAGGAAAACCGCAAGTGTATATTAGATATGGTTCTCAAG
GACATCTCCGTCAGCTGTGGAGGAGATAGACCTTTAATTGAGTGGTTAGT
TGACGAAACAGAGGGAATAACGGGCGCTGAACTGGTTTCGCTCTGTGATG
AAGCAGGGATGATCGCCATCGAGGAAGAGGAAACCGAAACGGAGTGCGTA
CGTGAGAAACACTTTCGAGAGGCGATTGCGCAATACGCTCGAATGAAGGC
GTCTTCAAAAGTTACCGCATCGGGATGA

protein sequence of Gcaud8481.t1

>Gcaud8481.t1 ID=Gcaud8481.t1|Name=Gcaud8481.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=276bp
MFISTNVTTQEYSATDWGRHAGYNLVKKQLMRLCEWPFVHRETFKRLGVP
PPRGVLLYGPHGVGKTLLAESLLRRLTSVNSIRISATEVFSKYLGESEAL
VRRLFARARMLSPCVVFIDDIDAVGQRGDEESSGVEGRVVASLLTELDGV
HGEDVFVLACAADLMSLDPAMVRPGRIDNTIKLELPDKENRKCILDMVLK
DISVSCGGDRPLIEWLVDETEGITGAELVSLCDEAGMIAIEEEETETECV
REKHFREAIAQYARMKASSKVTASG*

mRNA from alignment at NODE_2653_length_5042_cov_6.430822:4201..5028-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8481.t1 ID=Gcaud8481.t1|Name=Gcaud8481.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=828bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:4201..5028- (Gracilaria caudata M_176_S67 male)
ATGTTCATCTCCACAAACGTAACAACGCAAGAATATTCTGCAACAGACTG
GGGCCGTCACGCCGGTTATAACTTGGTAAAGAAACAACTCATGCGCTTGT
GCGAATGGCCGTTCGTTCATCGCGAAACATTCAAACGTCTGGGAGTACCA
CCTCCAAGAGGCGTCTTGCTATACGGACCACATGGCGTTGGTAAAACACT
TCTTGCTGAGTCATTGCTGCGCAGATTGACAAGCGTAAACAGCATTCGTA
TCAGTGCGACTGAAGTGTTCTCGAAGTATCTAGGGGAATCTGAGGCTCTT
GTACGCCGTCTGTTTGCACGTGCCAGGATGCTCAGTCCTTGCGTCGTGTT
TATTGATGATATTGATGCGGTGGGACAACGGGGTGATGAGGAATCAAGCG
GGGTTGAGGGACGCGTGGTTGCTTCATTGCTCACGGAGCTTGATGGGGTT
CATGGGGAGGACGTTTTCGTTCTGGCCTGTGCGGCGGACCTGATGAGTCT
TGACCCCGCAATGGTGCGTCCCGGGCGAATCGACAACACTATCAAGCTTG
AGTTGCCAGACAAGGAAAACCGCAAGTGTATATTAGATATGGTTCTCAAG
GACATCTCCGTCAGCTGTGGAGGAGATAGACCTTTAATTGAGTGGTTAGT
TGACGAAACAGAGGGAATAACGGGCGCTGAACTGGTTTCGCTCTGTGATG
AAGCAGGGATGATCGCCATCGAGGAAGAGGAAACCGAAACGGAGTGCGTA
CGTGAGAAACACTTTCGAGAGGCGATTGCGCAATACGCTCGAATGAAGGC
GTCTTCAAAAGTTACCGCATCGGGATGA

Coding sequence (CDS) from alignment at NODE_2653_length_5042_cov_6.430822:4201..5028-

>Gcaud8481.t1 ID=Gcaud8481.t1|Name=Gcaud8481.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=828bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:4201..5028- (Gracilaria caudata M_176_S67 male)
ATGTTCATCTCCACAAACGTAACAACGCAAGAATATTCTGCAACAGACTG
GGGCCGTCACGCCGGTTATAACTTGGTAAAGAAACAACTCATGCGCTTGT
GCGAATGGCCGTTCGTTCATCGCGAAACATTCAAACGTCTGGGAGTACCA
CCTCCAAGAGGCGTCTTGCTATACGGACCACATGGCGTTGGTAAAACACT
TCTTGCTGAGTCATTGCTGCGCAGATTGACAAGCGTAAACAGCATTCGTA
TCAGTGCGACTGAAGTGTTCTCGAAGTATCTAGGGGAATCTGAGGCTCTT
GTACGCCGTCTGTTTGCACGTGCCAGGATGCTCAGTCCTTGCGTCGTGTT
TATTGATGATATTGATGCGGTGGGACAACGGGGTGATGAGGAATCAAGCG
GGGTTGAGGGACGCGTGGTTGCTTCATTGCTCACGGAGCTTGATGGGGTT
CATGGGGAGGACGTTTTCGTTCTGGCCTGTGCGGCGGACCTGATGAGTCT
TGACCCCGCAATGGTGCGTCCCGGGCGAATCGACAACACTATCAAGCTTG
AGTTGCCAGACAAGGAAAACCGCAAGTGTATATTAGATATGGTTCTCAAG
GACATCTCCGTCAGCTGTGGAGGAGATAGACCTTTAATTGAGTGGTTAGT
TGACGAAACAGAGGGAATAACGGGCGCTGAACTGGTTTCGCTCTGTGATG
AAGCAGGGATGATCGCCATCGAGGAAGAGGAAACCGAAACGGAGTGCGTA
CGTGAGAAACACTTTCGAGAGGCGATTGCGCAATACGCTCGAATGAAGGC
GTCTTCAAAAGTTACCGCATCGGGATGA