Gcaud8479.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8479.t1
Unique NameGcaud8479.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2653_length_5042_cov_6.430822contigNODE_2653_length_5042_cov_6.430822:1422..2227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8479Gcaud8479Gracilaria caudata M_176_S67 malegeneNODE_2653_length_5042_cov_6.430822 1422..2227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8479.t1Gcaud8479.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2653_length_5042_cov_6.430822 1422..2227 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8479.t1.start1Gcaud8479.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2653_length_5042_cov_6.430822 1422..1424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8479.t1.CDS1Gcaud8479.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2653_length_5042_cov_6.430822 1422..1427 +
Gcaud8479.t1.CDS2Gcaud8479.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2653_length_5042_cov_6.430822 1497..1772 +
Gcaud8479.t1.CDS3Gcaud8479.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2653_length_5042_cov_6.430822 1851..1863 +
Gcaud8479.t1.CDS4Gcaud8479.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_2653_length_5042_cov_6.430822 2075..2128 +
Gcaud8479.t1.CDS5Gcaud8479.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_2653_length_5042_cov_6.430822 2199..2227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8479.t1.exon1Gcaud8479.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2653_length_5042_cov_6.430822 1422..1427 +
Gcaud8479.t1.exon2Gcaud8479.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2653_length_5042_cov_6.430822 1497..1772 +
Gcaud8479.t1.exon3Gcaud8479.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2653_length_5042_cov_6.430822 1851..1863 +
Gcaud8479.t1.exon4Gcaud8479.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_2653_length_5042_cov_6.430822 2075..2128 +
Gcaud8479.t1.exon5Gcaud8479.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_2653_length_5042_cov_6.430822 2199..2227 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8479.t1.intron1Gcaud8479.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2653_length_5042_cov_6.430822 1428..1496 +
Gcaud8479.t1.intron2Gcaud8479.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2653_length_5042_cov_6.430822 1773..1850 +
Gcaud8479.t1.intron3Gcaud8479.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_2653_length_5042_cov_6.430822 1864..2074 +
Gcaud8479.t1.intron4Gcaud8479.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_2653_length_5042_cov_6.430822 2129..2198 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8479.t1.stop1Gcaud8479.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2653_length_5042_cov_6.430822 2225..2227 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8479.t1 ID=Gcaud8479.t1|Name=Gcaud8479.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=126bp
LYEYVRYFCCREFIVPSKGELLFSMAYDDECKDDLLYSSVILQGAVALVG
QEHAKDFLGALVPITKKRETTMITVAAFAGRAQSRTHESIRKNMFTSFWR
EYIAVQFVFDVICVSENHTVIAKSM*
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spliced messenger RNA

>Gcaud8479.t1 ID=Gcaud8479.t1|Name=Gcaud8479.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=378bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:1422..2227+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ttgtatgaatatgtgcgttacttttgttgtcgcgagtttattgtaccgag
caaaggagagctgttaTTTAGTATGGCATATGATGACGAATGCAAAGATG
ACTTGTTATACAGCTCTGTCATTTTGCAAGGAGCCGTGGCATTGGTAGGA
CAGGAACACGCAAAGGATTTTCTGGGTGCGTTGGTGCCAATTACGAAGAA
ACGAGAAACTACAATGATCACTGTCGCAGCTTTTGCTGGAAGAGCTCAAA
GTCGAACTCATGAAAGTATACGAAAGAACATGTTTACTTCTTTTTGGCGT
GAATACATTGCAGTTCAGTTTGTTTTCGACGTCATTTGTGTCTCTGAAAA
TCACACAGTCATTGCGAAGTCTAtgtaa
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protein sequence of Gcaud8479.t1

>Gcaud8479.t1 ID=Gcaud8479.t1|Name=Gcaud8479.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=126bp
LYEYVRYFCCREFIVPSKGELLFSMAYDDECKDDLLYSSVILQGAVALVG
QEHAKDFLGALVPITKKRETTMITVAAFAGRAQSRTHESIRKNMFTSFWR
EYIAVQFVFDVICVSENHTVIAKSM*
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mRNA from alignment at NODE_2653_length_5042_cov_6.430822:1422..2227+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8479.t1 ID=Gcaud8479.t1|Name=Gcaud8479.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=806bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:1422..2227+ (Gracilaria caudata M_176_S67 male)
ttgtatgtatgttgtgcgaatcaaagtttgtagaaattctgaatgaacta
acatatctggtgccacgtcttgaaggaatatgtgcgttacttttgttgtc
gcgagtttattgtaccgagcaaaggagagctgttaTTTAGTATGGCATAT
GATGACGAATGCAAAGATGACTTGTTATACAGCTCTGTCATTTTGCAAGG
AGCCGTGGCATTGGTAGGACAGGAACACGCAAAGGATTTTCTGGGTGCGT
TGGTGCCAATTACGAAGAAACGAGAAACTACAATGATCACTGTCGCAGCT
TTTGCTGGAAGAGCTCAAAGTCGAACTCATGAAAGTATACGAAAGAACAT
GGTACGTATTCGCTCTCAATACTAAAGCTCGCATGCTTCACGATTAATTG
AACTAACTTTTAATCTTTCATGGAAACAGTTTACTTCTTTTTGTGCAGCG
ACAAGCACAGCTTGCCCTTTGAATCCGTGTTCGAACTCAACCACTGAAGT
GCGAAAAGAGTTTGCAAAGAATTTGGTACGAAATCAAACTCACAAAGTGG
ACATGGATTTTACGCAAAGCTGGGCAGCCTGTTGCTTTTCTGCTCACGAA
GAAGCGAAGGCAACTGCATTGTNNNNNNNNNNTTTGAAAATTTGCTGTCT
GAGGGCGTGAATACATTGCAGTTCAGTTTGTTTTCGACGTCATTTGTGTC
TCTGAAAGTACGTCACTGTCTTTTGTTTCATAGAATAGACTCAATGGACT
CACATTCTTACATTATTTTTGTGGTAGATCACACAGTCATTGCGAAGTCT
Atgtaa
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Coding sequence (CDS) from alignment at NODE_2653_length_5042_cov_6.430822:1422..2227+

>Gcaud8479.t1 ID=Gcaud8479.t1|Name=Gcaud8479.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=378bp|location=Sequence derived from alignment at NODE_2653_length_5042_cov_6.430822:1422..2227+ (Gracilaria caudata M_176_S67 male)
ttgtatgaatatgtgcgttacttttgttgtcgcgagtttattgtaccgag
caaaggagagctgttaTTTAGTATGGCATATGATGACGAATGCAAAGATG
ACTTGTTATACAGCTCTGTCATTTTGCAAGGAGCCGTGGCATTGGTAGGA
CAGGAACACGCAAAGGATTTTCTGGGTGCGTTGGTGCCAATTACGAAGAA
ACGAGAAACTACAATGATCACTGTCGCAGCTTTTGCTGGAAGAGCTCAAA
GTCGAACTCATGAAAGTATACGAAAGAACATGTTTACTTCTTTTTGGCGT
GAATACATTGCAGTTCAGTTTGTTTTCGACGTCATTTGTGTCTCTGAAAA
TCACACAGTCATTGCGAAGTCTAtgtaa
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