Gcaud3522.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3522.t1
Unique Name	Gcaud3522.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_25_length_75543_cov_4.432116	contig	NODE_25_length_75543_cov_4.432116:48571..50166 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3522	Gcaud3522	Gracilaria caudata M_176_S67 male	gene	NODE_25_length_75543_cov_4.432116 48571..50166 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3522.t1.stop1	Gcaud3522.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_25_length_75543_cov_4.432116 48571..48573 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3522.t1.CDS1	Gcaud3522.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_25_length_75543_cov_4.432116 48571..50166 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3522.t1.exon1	Gcaud3522.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_25_length_75543_cov_4.432116 48571..50166 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3522.t1.start1	Gcaud3522.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_25_length_75543_cov_4.432116 50164..50166 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3522.t1	Gcaud3522.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_25_length_75543_cov_4.432116 48571..50166 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_25_length_75543_cov_4.432116:48571..50166-
coding sequence from alignment at NODE_25_length_75543_cov_4.432116:48571..50166-

mRNA sequence

>Gcaud3522.t1 ID=Gcaud3522.t1|Name=Gcaud3522.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=532bp
MSADEGEDKNLDNLPQVLRLRSQGTFLAKSSDFTRDAAILHTTEIEVDIQ
GMHDGHVVGRDGSAGVGFVSAKTRLDRIFQKDLDTNGSSSKPPPPPPPPP
PPAVRLKTRPSSTLESVEDKTMVSIGTGMSSIIQKTNAVSRGDKPPTNIV
APPPIEGMYFRSPTRHIKLIKTRLSDLPAVIQDQEPQIRGGVAVYKVNDE
AHRERYGTMVEINAIDYINRLKGTVRDLERQLSVVQGILEKERDTRHANK
NTRASLRMGTFMGRRSKDPDYKSSDKFKRSQKGSKNGSTASGTASNASSA
KGSPGSSISEHKNPGVRPRPPVPPVNFPRGFGFHPERVRDSKPTREEQSI
TTSPTRPDDGLLVRKGSVDSNGELVLDTTKDDTRKEANISNSSLPEDTTQ
DSDLANDDQVRTSTHDASSTVVSSDDQKPADHTRTFHPRKPIQQDRNAAP
MPGVDARKARRGRAGRTKSFSGVPTDEVRKVSTYDYEQEKVSRAMSMHRE
SNAEPPRPTQPPPPPVTKKSRGVRKLFGLRS*

spliced messenger RNA

>Gcaud3522.t1 ID=Gcaud3522.t1|Name=Gcaud3522.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:48571..50166- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCTGATGAAGGCGAAGACAAAAACCTTGACAATCTCCCGCAGGT
TCTCAGACTGCGTAGCCAGGGCACGTTCCTCGCGAAGAGCTCAGATTTTA
CTAGAGACGCTGCGATTCTTCACACAACCGAGATTGAAGTCGATATTCAA
GGCATGCATGACGGTCATGTGGTGGGGAGAGATGGTTCAGCGGGTGTTGG
GTTCGTTTCAGCTAAGACTAGACTGGATCGGATATTTCAAAAAGACTTGG
ATACAAACGGGTCGTCCTCCAAACCTCCACCGCCTCCGCCACCGCCTCCG
CCGCCAGCGGTCCGCTTGAAAACAAGGCCTTCTTCTACTCTTGAGTCTGT
TGAGGACAAGACTATGGTTTCTATCGGAACGGGCATGTCTTCTATAATTC
AGAAAACGAATGCCGTTAGTAGAGGCGACAAACCTCCAACAAACATTGTT
GCCCCGCCCCCAATCGAGGGCATGTACTTTCGTTCTCCTACAAGGCATAT
AAAACTTATCAAGACCAGACTTTCAGACCTGCCTGCAGTTATCCAAGACC
AGGAACCTCAAATTCGCGGAGGAGTTGCGGTGTACAAGGTAAATGACGAA
GCTCATCGTGAGAGGTACGGTACGATGGTCGAGATAAACGCAATTGACTA
TATTAATCGGCTCAAGGGGACTGTTCGGGATCTGGAGCGCCAGCTGAGTG
TCGTGCAAGGAATTTTGGAAAAAGAACGAGACACTCGCCACGCCAACAAA
AACACGCGAGCTTCACTCCGCATGGGCACGTTTATGGGAAGAAGGTCAAA
AGACCCTGACTACAAATCTTCAGACAAATTCAAACGTTCTCAAAAGGGTA
GTAAGAACGGTTCAACTGCCAGCGGAACCGCAAGCAATGCATCTTCGGCA
AAAGGTTCTCCGGGTTCAAGCATCTCAGAACACAAGAATCCTGGAGTCCG
ACCGAGGCCTCCGGTACCCCCTGTTAACTTTCCACGTGGGTTTGGTTTTC
ATCCAGAGCGTGTGAGAGATTCTAAGCCAACGCGAGAAGAGCAAAGTATA
ACAACTTCTCCAACCAGACCAGATGACGGTTTACTGGTCAGGAAAGGTAG
CGTAGACTCCAATGGTGAGCTCGTGCTGGACACCACCAAAGACGATACAA
GGAAAGAAGCAAATATTTCCAACTCGAGCTTGCCAGAAGACACGACCCAG
GACTCAGATTTAGCTAATGATGACCAGGTGCGAACCTCAACCCATGACGC
GTCTAGTACCGTAGTATCGTCCGATGATCAAAAACCTGCAGATCATACAC
GAACCTTCCATCCAAGAAAACCGATCCAACAAGATCGAAATGCTGCGCCG
ATGCCTGGAGTCGATGCTCGGAAAGCTAGACGCGGAAGAGCTGGTCGAAC
GAAGAGTTTCTCAGGTGTGCCAACTGATGAAGTTCGAAAGGTCTCCACAT
ACGATTACGAACAAGAGAAGGTTTCCAGAGCCATGTCTATGCACCGAGAA
TCGAATGCTGAACCACCACGACCAACACAACCACCACCGCCACCAGTGAC
GAAGAAAAGTAGAGGGGTACGTAAGCTATTTGGCCTCAGATCCTGA

protein sequence of Gcaud3522.t1

>Gcaud3522.t1 ID=Gcaud3522.t1|Name=Gcaud3522.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=532bp
MSADEGEDKNLDNLPQVLRLRSQGTFLAKSSDFTRDAAILHTTEIEVDIQ
GMHDGHVVGRDGSAGVGFVSAKTRLDRIFQKDLDTNGSSSKPPPPPPPPP
PPAVRLKTRPSSTLESVEDKTMVSIGTGMSSIIQKTNAVSRGDKPPTNIV
APPPIEGMYFRSPTRHIKLIKTRLSDLPAVIQDQEPQIRGGVAVYKVNDE
AHRERYGTMVEINAIDYINRLKGTVRDLERQLSVVQGILEKERDTRHANK
NTRASLRMGTFMGRRSKDPDYKSSDKFKRSQKGSKNGSTASGTASNASSA
KGSPGSSISEHKNPGVRPRPPVPPVNFPRGFGFHPERVRDSKPTREEQSI
TTSPTRPDDGLLVRKGSVDSNGELVLDTTKDDTRKEANISNSSLPEDTTQ
DSDLANDDQVRTSTHDASSTVVSSDDQKPADHTRTFHPRKPIQQDRNAAP
MPGVDARKARRGRAGRTKSFSGVPTDEVRKVSTYDYEQEKVSRAMSMHRE
SNAEPPRPTQPPPPPVTKKSRGVRKLFGLRS*

mRNA from alignment at NODE_25_length_75543_cov_4.432116:48571..50166-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3522.t1 ID=Gcaud3522.t1|Name=Gcaud3522.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:48571..50166- (Gracilaria caudata M_176_S67 male)
ATGTCAGCTGATGAAGGCGAAGACAAAAACCTTGACAATCTCCCGCAGGT
TCTCAGACTGCGTAGCCAGGGCACGTTCCTCGCGAAGAGCTCAGATTTTA
CTAGAGACGCTGCGATTCTTCACACAACCGAGATTGAAGTCGATATTCAA
GGCATGCATGACGGTCATGTGGTGGGGAGAGATGGTTCAGCGGGTGTTGG
GTTCGTTTCAGCTAAGACTAGACTGGATCGGATATTTCAAAAAGACTTGG
ATACAAACGGGTCGTCCTCCAAACCTCCACCGCCTCCGCCACCGCCTCCG
CCGCCAGCGGTCCGCTTGAAAACAAGGCCTTCTTCTACTCTTGAGTCTGT
TGAGGACAAGACTATGGTTTCTATCGGAACGGGCATGTCTTCTATAATTC
AGAAAACGAATGCCGTTAGTAGAGGCGACAAACCTCCAACAAACATTGTT
GCCCCGCCCCCAATCGAGGGCATGTACTTTCGTTCTCCTACAAGGCATAT
AAAACTTATCAAGACCAGACTTTCAGACCTGCCTGCAGTTATCCAAGACC
AGGAACCTCAAATTCGCGGAGGAGTTGCGGTGTACAAGGTAAATGACGAA
GCTCATCGTGAGAGGTACGGTACGATGGTCGAGATAAACGCAATTGACTA
TATTAATCGGCTCAAGGGGACTGTTCGGGATCTGGAGCGCCAGCTGAGTG
TCGTGCAAGGAATTTTGGAAAAAGAACGAGACACTCGCCACGCCAACAAA
AACACGCGAGCTTCACTCCGCATGGGCACGTTTATGGGAAGAAGGTCAAA
AGACCCTGACTACAAATCTTCAGACAAATTCAAACGTTCTCAAAAGGGTA
GTAAGAACGGTTCAACTGCCAGCGGAACCGCAAGCAATGCATCTTCGGCA
AAAGGTTCTCCGGGTTCAAGCATCTCAGAACACAAGAATCCTGGAGTCCG
ACCGAGGCCTCCGGTACCCCCTGTTAACTTTCCACGTGGGTTTGGTTTTC
ATCCAGAGCGTGTGAGAGATTCTAAGCCAACGCGAGAAGAGCAAAGTATA
ACAACTTCTCCAACCAGACCAGATGACGGTTTACTGGTCAGGAAAGGTAG
CGTAGACTCCAATGGTGAGCTCGTGCTGGACACCACCAAAGACGATACAA
GGAAAGAAGCAAATATTTCCAACTCGAGCTTGCCAGAAGACACGACCCAG
GACTCAGATTTAGCTAATGATGACCAGGTGCGAACCTCAACCCATGACGC
GTCTAGTACCGTAGTATCGTCCGATGATCAAAAACCTGCAGATCATACAC
GAACCTTCCATCCAAGAAAACCGATCCAACAAGATCGAAATGCTGCGCCG
ATGCCTGGAGTCGATGCTCGGAAAGCTAGACGCGGAAGAGCTGGTCGAAC
GAAGAGTTTCTCAGGTGTGCCAACTGATGAAGTTCGAAAGGTCTCCACAT
ACGATTACGAACAAGAGAAGGTTTCCAGAGCCATGTCTATGCACCGAGAA
TCGAATGCTGAACCACCACGACCAACACAACCACCACCGCCACCAGTGAC
GAAGAAAAGTAGAGGGGTACGTAAGCTATTTGGCCTCAGATCCTGA

Coding sequence (CDS) from alignment at NODE_25_length_75543_cov_4.432116:48571..50166-

>Gcaud3522.t1 ID=Gcaud3522.t1|Name=Gcaud3522.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1596bp|location=Sequence derived from alignment at NODE_25_length_75543_cov_4.432116:48571..50166- (Gracilaria caudata M_176_S67 male)
ATGTCAGCTGATGAAGGCGAAGACAAAAACCTTGACAATCTCCCGCAGGT
TCTCAGACTGCGTAGCCAGGGCACGTTCCTCGCGAAGAGCTCAGATTTTA
CTAGAGACGCTGCGATTCTTCACACAACCGAGATTGAAGTCGATATTCAA
GGCATGCATGACGGTCATGTGGTGGGGAGAGATGGTTCAGCGGGTGTTGG
GTTCGTTTCAGCTAAGACTAGACTGGATCGGATATTTCAAAAAGACTTGG
ATACAAACGGGTCGTCCTCCAAACCTCCACCGCCTCCGCCACCGCCTCCG
CCGCCAGCGGTCCGCTTGAAAACAAGGCCTTCTTCTACTCTTGAGTCTGT
TGAGGACAAGACTATGGTTTCTATCGGAACGGGCATGTCTTCTATAATTC
AGAAAACGAATGCCGTTAGTAGAGGCGACAAACCTCCAACAAACATTGTT
GCCCCGCCCCCAATCGAGGGCATGTACTTTCGTTCTCCTACAAGGCATAT
AAAACTTATCAAGACCAGACTTTCAGACCTGCCTGCAGTTATCCAAGACC
AGGAACCTCAAATTCGCGGAGGAGTTGCGGTGTACAAGGTAAATGACGAA
GCTCATCGTGAGAGGTACGGTACGATGGTCGAGATAAACGCAATTGACTA
TATTAATCGGCTCAAGGGGACTGTTCGGGATCTGGAGCGCCAGCTGAGTG
TCGTGCAAGGAATTTTGGAAAAAGAACGAGACACTCGCCACGCCAACAAA
AACACGCGAGCTTCACTCCGCATGGGCACGTTTATGGGAAGAAGGTCAAA
AGACCCTGACTACAAATCTTCAGACAAATTCAAACGTTCTCAAAAGGGTA
GTAAGAACGGTTCAACTGCCAGCGGAACCGCAAGCAATGCATCTTCGGCA
AAAGGTTCTCCGGGTTCAAGCATCTCAGAACACAAGAATCCTGGAGTCCG
ACCGAGGCCTCCGGTACCCCCTGTTAACTTTCCACGTGGGTTTGGTTTTC
ATCCAGAGCGTGTGAGAGATTCTAAGCCAACGCGAGAAGAGCAAAGTATA
ACAACTTCTCCAACCAGACCAGATGACGGTTTACTGGTCAGGAAAGGTAG
CGTAGACTCCAATGGTGAGCTCGTGCTGGACACCACCAAAGACGATACAA
GGAAAGAAGCAAATATTTCCAACTCGAGCTTGCCAGAAGACACGACCCAG
GACTCAGATTTAGCTAATGATGACCAGGTGCGAACCTCAACCCATGACGC
GTCTAGTACCGTAGTATCGTCCGATGATCAAAAACCTGCAGATCATACAC
GAACCTTCCATCCAAGAAAACCGATCCAACAAGATCGAAATGCTGCGCCG
ATGCCTGGAGTCGATGCTCGGAAAGCTAGACGCGGAAGAGCTGGTCGAAC
GAAGAGTTTCTCAGGTGTGCCAACTGATGAAGTTCGAAAGGTCTCCACAT
ACGATTACGAACAAGAGAAGGTTTCCAGAGCCATGTCTATGCACCGAGAA
TCGAATGCTGAACCACCACGACCAACACAACCACCACCGCCACCAGTGAC
GAAGAAAAGTAGAGGGGTACGTAAGCTATTTGGCCTCAGATCCTGA