Gcaud2233.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2233.t1
Unique NameGcaud2233.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2591_length_5202_cov_3.993935contigNODE_2591_length_5202_cov_3.993935:1663..3347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog999611.KI421504_gene1366
PFAMsAmidohydro_3
Max annot lvl28211|Alphaproteobacteria
Evalue1.36e-121
EggNOG OGsCOG1574@1|root,COG1574@2|Bacteria,1MWP2@1224|Proteobacteria,2TXAW@28211|Alphaproteobacteria,282F6@191028|Leisingera
DescriptionAmidohydrolase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2233Gcaud2233Gracilaria caudata M_176_S67 malegeneNODE_2591_length_5202_cov_3.993935 1663..3347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2233.t1Gcaud2233.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2591_length_5202_cov_3.993935 1663..3347 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2233.t1.stop1Gcaud2233.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2591_length_5202_cov_3.993935 1663..1665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2233.t1.CDS1Gcaud2233.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2591_length_5202_cov_3.993935 1663..2262 -
Gcaud2233.t1.CDS2Gcaud2233.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2591_length_5202_cov_3.993935 2334..3347 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2233.t1.exon1Gcaud2233.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2591_length_5202_cov_3.993935 1663..2262 -
Gcaud2233.t1.exon2Gcaud2233.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2591_length_5202_cov_3.993935 2334..3347 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2233.t1.intron1Gcaud2233.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2591_length_5202_cov_3.993935 2263..2333 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2233.t1.start1Gcaud2233.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2591_length_5202_cov_3.993935 3345..3347 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=538bp
MSKPDTAVLVYNAVVYTADKSDSIVDSFAYNADGVILSVGSEGEARDALE
RAGESDYEEVNMSGAFIVPGFQDVHLHIPEAGINRLPDVFCAVDPGRRLS
QYINDLKRCARNGDSTDWLRAAGASLYDLNGVGDSPLVELDKAFPDRPVI
VLDDVGHGAWINSVAMDEAGIDGGGDPRGGIYGRDSSGNFNGLLFENAQQ
KARDASKISFSKMYDGLLEALDVVGRNGITSLSDAGGFWTRDSVDVWLEA
FDNGDISVRAKNTLYVYPDKSFSSQMAKLKGFYRDGKREGDLVSFNTAKI
YVDGILDLGTALLLKDYDYALNERYPRGFPYFDDSALRSYVQELINAGFR
INFHSIGDGATRKALDVLEATSGARESRSRITHSYMIDEADEARFRELNV
IADFQMAPEVISRRYQDEMSEVIGARAYQLIRTQRMLDAGAMVTISSDWD
ADPLSPLWSMSRALQSGRVPNVETAIRVWTINAAYALGHDDVTGSIEAGK
YADYAVLSRNLFDVSHGAIGSVSVEETVLGGRLVYAQ*
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spliced messenger RNA

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAACCCGATACAGCTGTGCTTGTGTACAACGCCGTGGTATACAC
CGCAGATAAGTCGGACTCCATAGTAGACTCTTTTGCGTACAACGCGGACG
GTGTGATTCTGTCAGTCGGTTCAGAAGGCGAAGCTCGCGACGCGCTGGAA
AGAGCCGGCGAATCAGATTATGAGGAAGTCAACATGAGCGGAGCTTTTAT
CGTTCCAGGATTCCAGGATGTTCATCTTCATATCCCGGAGGCTGGTATAA
ACAGACTGCCGGACGTGTTCTGCGCTGTTGACCCTGGTAGAAGACTCTCA
CAGTACATCAACGATTTGAAGCGATGCGCGAGGAATGGGGATTCCACAGA
CTGGCTTCGTGCTGCGGGTGCAAGTCTTTACGACCTGAATGGTGTCGGGG
ACTCGCCGCTTGTTGAACTGGACAAAGCTTTCCCAGATCGACCGGTAATC
GTGCTGGATGATGTGGGTCACGGAGCTTGGATCAATTCTGTGGCCATGGA
CGAAGCTGGCATTGACGGCGGTGGTGATCCAAGAGGGGGTATATATGGAA
GGGATAGCTCTGGAAACTTTAACGGTTTGCTGTTTGAAAACGCTCAACAG
AAGGCGAGGGACGCGTCCAAAATATCGTTCTCGAAAATGTATGATGGGTT
GCTTGAAGCGTTGGATGTTGTGGGCAGAAATGGAATCACCTCTTTGTCTG
ACGCTGGAGGATTTTGGACGAGAGACAGTGTTGATGTATGGCTTGAGGCT
TTTGACAACGGGGATATCTCCGTTCGTGCCAAGAATACTCTGTATGTGTA
TCCAGATAAGTCGTTCTCCAGTCAGATGGCGAAGCTGAAGGGCTTCTACA
GAGATGGAAAGAGGGAAGGCGATTTGGTGTCGTTTAACACAGCCAAAATT
TATGTTGATGGTATTTTGGATCTTGGAACGGCTCTTTTGTTGAAGGACTA
TGACTACGCACTAAACGAAAGATATCCGAGGGGCTTCCCCTACTTTGACG
ATTCCGCGCTGAGGAGCTATGTGCAAGAACTTATCAATGCTGGGTTTCGC
ATTAACTTTCATTCAATTGGTGACGGGGCAACCAGAAAGGCTCTGGATGT
TCTCGAAGCAACTTCGGGCGCAAGAGAGTCGCGTAGCAGAATCACTCATT
CGTACATGATCGATGAGGCCGATGAGGCGAGATTCAGAGAGCTCAACGTG
ATTGCGGACTTTCAAATGGCGCCAGAAGTGATCTCAAGGCGGTATCAAGA
CGAAATGAGCGAGGTGATTGGCGCCAGGGCGTACCAACTCATTCGCACGC
AGCGCATGCTTGACGCCGGCGCGATGGTCACAATTTCGAGCGACTGGGAC
GCCGACCCGCTCTCGCCGCTGTGGTCCATGTCGCGCGCGCTGCAATCCGG
GCGCGTTCCAAACGTGGAGACGGCCATCAGAGTGTGGACCATCAACGCGG
CGTATGCGCTGGGGCACGACGACGTGACGGGGTCGATTGAGGCCGGCAAG
TACGCGGACTACGCGGTGCTGAGCCGCAACCTGTTCGACGTCTCGCACGG
CGCGATTGGCAGCGTGAGCGTGGAGGAGACCGTGCTCGGCGGGCGGCTGG
TGTACGCGCAATAG
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protein sequence of Gcaud2233.t1

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=538bp
MSKPDTAVLVYNAVVYTADKSDSIVDSFAYNADGVILSVGSEGEARDALE
RAGESDYEEVNMSGAFIVPGFQDVHLHIPEAGINRLPDVFCAVDPGRRLS
QYINDLKRCARNGDSTDWLRAAGASLYDLNGVGDSPLVELDKAFPDRPVI
VLDDVGHGAWINSVAMDEAGIDGGGDPRGGIYGRDSSGNFNGLLFENAQQ
KARDASKISFSKMYDGLLEALDVVGRNGITSLSDAGGFWTRDSVDVWLEA
FDNGDISVRAKNTLYVYPDKSFSSQMAKLKGFYRDGKREGDLVSFNTAKI
YVDGILDLGTALLLKDYDYALNERYPRGFPYFDDSALRSYVQELINAGFR
INFHSIGDGATRKALDVLEATSGARESRSRITHSYMIDEADEARFRELNV
IADFQMAPEVISRRYQDEMSEVIGARAYQLIRTQRMLDAGAMVTISSDWD
ADPLSPLWSMSRALQSGRVPNVETAIRVWTINAAYALGHDDVTGSIEAGK
YADYAVLSRNLFDVSHGAIGSVSVEETVLGGRLVYAQ*
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mRNA from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1685bp|location=Sequence derived from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347- (Gracilaria caudata M_176_S67 male)
ATGAGCAAACCCGATACAGCTGTGCTTGTGTACAACGCCGTGGTATACAC
CGCAGATAAGTCGGACTCCATAGTAGACTCTTTTGCGTACAACGCGGACG
GTGTGATTCTGTCAGTCGGTTCAGAAGGCGAAGCTCGCGACGCGCTGGAA
AGAGCCGGCGAATCAGATTATGAGGAAGTCAACATGAGCGGAGCTTTTAT
CGTTCCAGGATTCCAGGATGTTCATCTTCATATCCCGGAGGCTGGTATAA
ACAGACTGCCGGACGTGTTCTGCGCTGTTGACCCTGGTAGAAGACTCTCA
CAGTACATCAACGATTTGAAGCGATGCGCGAGGAATGGGGATTCCACAGA
CTGGCTTCGTGCTGCGGGTGCAAGTCTTTACGACCTGAATGGTGTCGGGG
ACTCGCCGCTTGTTGAACTGGACAAAGCTTTCCCAGATCGACCGGTAATC
GTGCTGGATGATGTGGGTCACGGAGCTTGGATCAATTCTGTGGCCATGGA
CGAAGCTGGCATTGACGGCGGTGGTGATCCAAGAGGGGGTATATATGGAA
GGGATAGCTCTGGAAACTTTAACGGTTTGCTGTTTGAAAACGCTCAACAG
AAGGCGAGGGACGCGTCCAAAATATCGTTCTCGAAAATGTATGATGGGTT
GCTTGAAGCGTTGGATGTTGTGGGCAGAAATGGAATCACCTCTTTGTCTG
ACGCTGGAGGATTTTGGACGAGAGACAGTGTTGATGTATGGCTTGAGGCT
TTTGACAACGGGGATATCTCCGTTCGTGCCAAGAATACTCTGTATGTGTA
TCCAGATAAGTCGTTCTCCAGTCAGATGGCGAAGCTGAAGGGCTTCTACA
GAGATGGAAAGAGGGAAGGCGATTTGGTGTCGTTTAACACAGCCAAAATT
TATGTTGATGGTATTTTGGATCTTGGAACGGCTCTTTTGTTGAAGGACTA
TGACTACGCACTAAACGAAAGATATCCGAGGGGCTTCCCCTACTTTGACG
ATTCCGCGCTGAGGGTAAGCTTTTTTTTTATTTACAAAGCTTGCACCTTT
TCTTTTGTGGTTACTAACATTGTGAAACATGCAAGAGCTATGTGCAAGAA
CTTATCAATGCTGGGTTTCGCATTAACTTTCATTCAATTGGTGACGGGGC
AACCAGAAAGGCTCTGGATGTTCTCGAAGCAACTTCGGGCGCAAGAGAGT
CGCGTAGCAGAATCACTCATTCGTACATGATCGATGAGGCCGATGAGGCG
AGATTCAGAGAGCTCAACGTGATTGCGGACTTTCAAATGGCGCCAGAAGT
GATCTCAAGGCGGTATCAAGACGAAATGAGCGAGGTGATTGGCGCCAGGG
CGTACCAACTCATTCGCACGCAGCGCATGCTTGACGCCGGCGCGATGGTC
ACAATTTCGAGCGACTGGGACGCCGACCCGCTCTCGCCGCTGTGGTCCAT
GTCGCGCGCGCTGCAATCCGGGCGCGTTCCAAACGTGGAGACGGCCATCA
GAGTGTGGACCATCAACGCGGCGTATGCGCTGGGGCACGACGACGTGACG
GGGTCGATTGAGGCCGGCAAGTACGCGGACTACGCGGTGCTGAGCCGCAA
CCTGTTCGACGTCTCGCACGGCGCGATTGGCAGCGTGAGCGTGGAGGAGA
CCGTGCTCGGCGGGCGGCTGGTGTACGCGCAATAG
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Coding sequence (CDS) from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347-

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1614bp|location=Sequence derived from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347- (Gracilaria caudata M_176_S67 male)
ATGAGCAAACCCGATACAGCTGTGCTTGTGTACAACGCCGTGGTATACAC
CGCAGATAAGTCGGACTCCATAGTAGACTCTTTTGCGTACAACGCGGACG
GTGTGATTCTGTCAGTCGGTTCAGAAGGCGAAGCTCGCGACGCGCTGGAA
AGAGCCGGCGAATCAGATTATGAGGAAGTCAACATGAGCGGAGCTTTTAT
CGTTCCAGGATTCCAGGATGTTCATCTTCATATCCCGGAGGCTGGTATAA
ACAGACTGCCGGACGTGTTCTGCGCTGTTGACCCTGGTAGAAGACTCTCA
CAGTACATCAACGATTTGAAGCGATGCGCGAGGAATGGGGATTCCACAGA
CTGGCTTCGTGCTGCGGGTGCAAGTCTTTACGACCTGAATGGTGTCGGGG
ACTCGCCGCTTGTTGAACTGGACAAAGCTTTCCCAGATCGACCGGTAATC
GTGCTGGATGATGTGGGTCACGGAGCTTGGATCAATTCTGTGGCCATGGA
CGAAGCTGGCATTGACGGCGGTGGTGATCCAAGAGGGGGTATATATGGAA
GGGATAGCTCTGGAAACTTTAACGGTTTGCTGTTTGAAAACGCTCAACAG
AAGGCGAGGGACGCGTCCAAAATATCGTTCTCGAAAATGTATGATGGGTT
GCTTGAAGCGTTGGATGTTGTGGGCAGAAATGGAATCACCTCTTTGTCTG
ACGCTGGAGGATTTTGGACGAGAGACAGTGTTGATGTATGGCTTGAGGCT
TTTGACAACGGGGATATCTCCGTTCGTGCCAAGAATACTCTGTATGTGTA
TCCAGATAAGTCGTTCTCCAGTCAGATGGCGAAGCTGAAGGGCTTCTACA
GAGATGGAAAGAGGGAAGGCGATTTGGTGTCGTTTAACACAGCCAAAATT
TATGTTGATGGTATTTTGGATCTTGGAACGGCTCTTTTGTTGAAGGACTA
TGACTACGCACTAAACGAAAGATATCCGAGGGGCTTCCCCTACTTTGACG
ATTCCGCGCTGAGGAGCTATGTGCAAGAACTTATCAATGCTGGGTTTCGC
ATTAACTTTCATTCAATTGGTGACGGGGCAACCAGAAAGGCTCTGGATGT
TCTCGAAGCAACTTCGGGCGCAAGAGAGTCGCGTAGCAGAATCACTCATT
CGTACATGATCGATGAGGCCGATGAGGCGAGATTCAGAGAGCTCAACGTG
ATTGCGGACTTTCAAATGGCGCCAGAAGTGATCTCAAGGCGGTATCAAGA
CGAAATGAGCGAGGTGATTGGCGCCAGGGCGTACCAACTCATTCGCACGC
AGCGCATGCTTGACGCCGGCGCGATGGTCACAATTTCGAGCGACTGGGAC
GCCGACCCGCTCTCGCCGCTGTGGTCCATGTCGCGCGCGCTGCAATCCGG
GCGCGTTCCAAACGTGGAGACGGCCATCAGAGTGTGGACCATCAACGCGG
CGTATGCGCTGGGGCACGACGACGTGACGGGGTCGATTGAGGCCGGCAAG
TACGCGGACTACGCGGTGCTGAGCCGCAACCTGTTCGACGTCTCGCACGG
CGCGATTGGCAGCGTGAGCGTGGAGGAGACCGTGCTCGGCGGGCGGCTGG
TGTACGCGCAATAG
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